BLASTX 7.6.2
Query= UN23211 /QuerySize=1328
(1327 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9VU02|SMD1_DROME Probable small nuclear ribonucleoprotein Sm... 174 2e-042
sp|O42661|SMD1_SCHPO Probable small nuclear ribonucleoprotein Sm... 164 2e-039
sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1 OS=Bo... 163 5e-039
sp|P62314|SMD1_HUMAN Small nuclear ribonucleoprotein Sm D1 OS=Ho... 163 5e-039
sp|Q4R5F6|SMD1_MACFA Small nuclear ribonucleoprotein Sm D1 OS=Ma... 163 5e-039
sp|P62315|SMD1_MOUSE Small nuclear ribonucleoprotein Sm D1 OS=Mu... 163 5e-039
sp|Q10013|SMD1_CAEEL Probable small nuclear ribonucleoprotein Sm... 155 9e-037
sp|Q02260|SMD1_YEAST Small nuclear ribonucleoprotein Sm D1 OS=Sa... 56 6e-007
sp|Q17348|SMD3_CAEEL Small nuclear ribonucleoprotein Sm D3 OS=Ca... 52 9e-006
sp|O44437|SMD3_DROME Small nuclear ribonucleoprotein Sm D3 OS=Dr... 52 9e-006
>sp|Q9VU02|SMD1_DROME Probable small nuclear ribonucleoprotein Sm D1
OS=Drosophila melanogaster GN=snRNP69D PE=1 SV=1
Length = 124
Score = 174 bits (439), Expect = 2e-042
Identities = 85/119 (71%), Positives = 104/119 (87%), Gaps = 1/119 (0%)
Frame = +3
Query: 120 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMTLKGKNPVTMDHLSL 299
MKLVRFLMKL++ETV+IELKNGT +HGTITGVDV+MNTHLK+V+MT+K ++PV ++ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSI 60
Query: 300 RGNNIRYYILPDSLNLETLLVEDTPRLKPKKPVAGKPVGRGRGRGGRGRGG-AGRGRGR 473
RGNNIRY+ILPDSL LETLL++DTP+ K KK +G+ RGRGRG RGRGG GRGRGR
Sbjct: 61 RGNNIRYFILPDSLPLETLLIDDTPKSKTKKKDSGRVGNRGRGRGARGRGGPRGRGRGR 119
>sp|O42661|SMD1_SCHPO Probable small nuclear ribonucleoprotein Sm D1
OS=Schizosaccharomyces pombe GN=smd1 PE=2 SV=1
Length = 117
Score = 164 bits (414), Expect = 2e-039
Identities = 83/116 (71%), Positives = 96/116 (82%), Gaps = 1/116 (0%)
Frame = +3
Query: 120 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMTLKGKNPVTMDHLSL 299
MKLVRFLMKL NETVSIELKNGT+VHGTIT VD+ MNTHLK VKMT+KG+ PV ++ LS+
Sbjct: 1 MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSI 60
Query: 300 RGNNIRYYILPDSLNLETLLVEDTPRLKPKKPVAGKPVGRGRGRGGRGRG-GAGRG 464
RGNNIRYYILPDSL L+TLL++D+ + K KK + GRGRGRG RGRG GA RG
Sbjct: 61 RGNNIRYYILPDSLPLDTLLIDDSTKPKQKKKEVVRGRGRGRGRGTRGRGRGASRG 116
>sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus
GN=SNRPD1 PE=3 SV=1
Length = 119
Score = 163 bits (410), Expect = 5e-039
Identities = 86/119 (72%), Positives = 99/119 (83%), Gaps = 5/119 (4%)
Frame = +3
Query: 120 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMTLKGKNPVTMDHLSL 299
MKLVRFLMKL++ETV+IELKNGT VHGTITGVDVSMNTHLK VKMTLK + PV ++ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 300 RGNNIRYYILPDSLNLETLLVEDTPRLKPKK--PVAGKPVGRGRGRG---GRGRGGAGR 461
RGNNIRY+ILPDSL L+TLLV+ P++K KK VAG+ GRGRGRG GRGRGG R
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR 119
>sp|P62314|SMD1_HUMAN Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens
GN=SNRPD1 PE=1 SV=1
Length = 119
Score = 163 bits (410), Expect = 5e-039
Identities = 86/119 (72%), Positives = 99/119 (83%), Gaps = 5/119 (4%)
Frame = +3
Query: 120 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMTLKGKNPVTMDHLSL 299
MKLVRFLMKL++ETV+IELKNGT VHGTITGVDVSMNTHLK VKMTLK + PV ++ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 300 RGNNIRYYILPDSLNLETLLVEDTPRLKPKK--PVAGKPVGRGRGRG---GRGRGGAGR 461
RGNNIRY+ILPDSL L+TLLV+ P++K KK VAG+ GRGRGRG GRGRGG R
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR 119
>sp|Q4R5F6|SMD1_MACFA Small nuclear ribonucleoprotein Sm D1 OS=Macaca
fascicularis GN=SNRPD1 PE=3 SV=1
Length = 119
Score = 163 bits (410), Expect = 5e-039
Identities = 86/119 (72%), Positives = 99/119 (83%), Gaps = 5/119 (4%)
Frame = +3
Query: 120 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMTLKGKNPVTMDHLSL 299
MKLVRFLMKL++ETV+IELKNGT VHGTITGVDVSMNTHLK VKMTLK + PV ++ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 300 RGNNIRYYILPDSLNLETLLVEDTPRLKPKK--PVAGKPVGRGRGRG---GRGRGGAGR 461
RGNNIRY+ILPDSL L+TLLV+ P++K KK VAG+ GRGRGRG GRGRGG R
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR 119
>sp|P62315|SMD1_MOUSE Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus
GN=Snrpd1 PE=2 SV=1
Length = 119
Score = 163 bits (410), Expect = 5e-039
Identities = 86/119 (72%), Positives = 99/119 (83%), Gaps = 5/119 (4%)
Frame = +3
Query: 120 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMTLKGKNPVTMDHLSL 299
MKLVRFLMKL++ETV+IELKNGT VHGTITGVDVSMNTHLK VKMTLK + PV ++ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 300 RGNNIRYYILPDSLNLETLLVEDTPRLKPKK--PVAGKPVGRGRGRG---GRGRGGAGR 461
RGNNIRY+ILPDSL L+TLLV+ P++K KK VAG+ GRGRGRG GRGRGG R
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR 119
>sp|Q10013|SMD1_CAEEL Probable small nuclear ribonucleoprotein Sm D1
OS=Caenorhabditis elegans GN=snr-3 PE=2 SV=1
Length = 126
Score = 155 bits (390), Expect = 9e-037
Identities = 79/117 (67%), Positives = 91/117 (77%)
Frame = +3
Query: 120 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMTLKGKNPVTMDHLSL 299
MKLVRFLMKL++ETV+IELKNGT V GTI GVDV+MNTHL+ V MT+K K PV +D LS+
Sbjct: 1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSI 60
Query: 300 RGNNIRYYILPDSLNLETLLVEDTPRLKPKKPVAGKPVGRGRGRGGRGRGGAGRGRG 470
RGNNIRY ILPD L L+TLL++D PR K + AG GRGRG GRGG GRGRG
Sbjct: 61 RGNNIRYIILPDPLALDTLLIDDEPRKKARAARAGASRGRGRGGMRGGRGGRGRGRG 117
>sp|Q02260|SMD1_YEAST Small nuclear ribonucleoprotein Sm D1 OS=Saccharomyces
cerevisiae GN=SMD1 PE=1 SV=1
Length = 146
Score = 56 bits (133), Expect = 6e-007
Identities = 34/69 (49%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Frame = +3
Query: 120 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMTLK-------GKNPV 278
MKLV FL KL NE V+IELKNGT V GT+ V MN L VK+TL N +
Sbjct: 1 MKLVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLPQPRLNKLNSNGI 60
Query: 279 TMDHLSLRG 305
M L L G
Sbjct: 61 AMASLYLTG 69
>sp|Q17348|SMD3_CAEEL Small nuclear ribonucleoprotein Sm D3 OS=Caenorhabditis
elegans GN=snr-1 PE=2 SV=2
Length = 136
Score = 52 bits (123), Expect = 9e-006
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 15/123 (12%)
Frame = +3
Query: 129 VRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMTLKGKNPVTMDHLSLRGN 308
++ L + V++E G V G ++ + +MN L +T + +D++ +RGN
Sbjct: 8 IKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGN 67
Query: 309 NIRYYILPDSLNLETLLVEDTPRLK----PKKPVAGKPVG----RGRGRGGRGRGGAGRG 464
IR+ ILPD ++++ P K +K G +G RGRGRG R GRG
Sbjct: 68 KIRFMILPD-------MLKNAPMFKNIGRAQKGAIGMGLGGLDQRGRGRGTAFRRPMGRG 120
Query: 465 RGR 473
R
Sbjct: 121 GPR 123
>sp|O44437|SMD3_DROME Small nuclear ribonucleoprotein Sm D3 OS=Drosophila
melanogaster GN=SmD3 PE=1 SV=1
Length = 151
Score = 52 bits (123), Expect = 9e-006
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Frame = +3
Query: 129 VRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMTLKGKNPVTMDHLSLRGN 308
++ L + ++ E G V G + + +MN + + +T + ++++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGS 66
Query: 309 NIRYYILPDSLNLETLLVEDTPRLKPKKPVAGKPV-----GRGRGRGGRGRGGAGRG 464
IR+ ILPD L + + T + GK RGRGRGG GG G G
Sbjct: 67 KIRFLILPDMLKNAPMFKKQTGKGLGGTAGRGKAAILRAQARGRGRGGPPGGGRGTG 123
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,767,994,010
Number of Sequences: 518415
Number of Extensions: 98767994010
Number of Successful Extensions: 632508636
Number of sequences better than 0.0: 0
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