BLASTX 7.6.2
Query= UN23344 /QuerySize=1000
(999 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G54890.1 | Symbols: LHCA1 | LHCA1; chlorophyll... 487 5e-138
TAIR9_protein||AT3G54890.4 | Symbols: LHCA1 | LHCA1; chlorophyll... 396 2e-110
TAIR9_protein||AT3G54890.2 | Symbols: LHCA1 | LHCA1; chlorophyll... 306 2e-083
TAIR9_protein||AT3G54890.3 | Symbols: LHCA1 | LHCA1; chlorophyll... 300 8e-082
TAIR9_protein||AT4G10340.1 | Symbols: LHCB5 | LHCB5 (LIGHT HARVE... 151 1e-036
TAIR9_protein||AT3G61470.1 | Symbols: LHCA2 | LHCA2; chlorophyll... 149 3e-036
TAIR9_protein||AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | CAB... 144 1e-034
TAIR9_protein||AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | CAB... 144 1e-034
TAIR9_protein||AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1... 144 1e-034
TAIR9_protein||AT1G45474.1 | Symbols: LHCA5 | LHCA5; pigment bin... 141 9e-034
TAIR9_protein||AT1G45474.2 | Symbols: LHCA5 | LHCA5; pigment bin... 141 9e-034
TAIR9_protein||AT3G47470.1 | Symbols: LHCA4, CAB4 | LHCA4 (LIGHT... 133 2e-031
TAIR9_protein||AT2G40100.1 | Symbols: LHCB4.3 | LHCB4.3 (light h... 127 1e-029
TAIR9_protein||AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | LHB1B1; ... 97 1e-020
TAIR9_protein||AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | LHB1B2; ... 97 1e-020
TAIR9_protein||AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | LHCB2.1; ... 92 4e-019
TAIR9_protein||AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | LHCB2.2; ... 92 4e-019
TAIR9_protein||AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | ... 90 2e-018
TAIR9_protein||AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | LHCA6; ch... 90 2e-018
>TAIR9_protein||AT3G54890.1 | Symbols: LHCA1 | LHCA1; chlorophyll binding |
chr3:20339706-20340922 REVERSE
Length = 242
Score = 487 bits (1253), Expect = 5e-138
Identities = 233/242 (96%), Positives = 235/242 (97%)
Frame = -2
Query: 911 MASNSLMSCGIAAVYPSLLSSSKSKFVSSGFALPNAGNVGRIRMAAHWMPGEPRPAYLDG 732
MASNSLMSCGIAAVYPSLLSSSKSKFVS+G LPNAGNVGRIRMAAHWMPGEPRPAYLDG
Sbjct: 1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVPLPNAGNVGRIRMAAHWMPGEPRPAYLDG 60
Query: 731 SAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 552
SAPGDFGFDPLGLGEVP NLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA
Sbjct: 61 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 120
Query: 551 VPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKD 372
+PGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKD
Sbjct: 121 LPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKD 180
Query: 371 PKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHKNIGDIVIPL 192
PKK EELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH NIGDIVIP
Sbjct: 181 PKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIPF 240
Query: 191 N* 186
N*
Sbjct: 241 N* 242
>TAIR9_protein||AT3G54890.4 | Symbols: LHCA1 | LHCA1; chlorophyll binding |
chr3:20339881-20340922 REVERSE
Length = 214
Score = 396 bits (1015), Expect = 2e-110
Identities = 189/196 (96%), Positives = 192/196 (97%)
Frame = -2
Query: 911 MASNSLMSCGIAAVYPSLLSSSKSKFVSSGFALPNAGNVGRIRMAAHWMPGEPRPAYLDG 732
MASNSLMSCGIAAVYPSLLSSSKSKFVS+G LPNAGNVGRIRMAAHWMPGEPRPAYLDG
Sbjct: 1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVPLPNAGNVGRIRMAAHWMPGEPRPAYLDG 60
Query: 731 SAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 552
SAPGDFGFDPLGLGEVP NLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA
Sbjct: 61 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 120
Query: 551 VPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKD 372
+PGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKD
Sbjct: 121 LPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKD 180
Query: 371 PKKFEELKVKEIKNGR 324
PKK EELKVKEIKNG+
Sbjct: 181 PKKLEELKVKEIKNGK 196
>TAIR9_protein||AT3G54890.2 | Symbols: LHCA1 | LHCA1; chlorophyll binding |
chr3:20339706-20340922 REVERSE
Length = 208
Score = 306 bits (782), Expect = 2e-083
Identities = 146/151 (96%), Positives = 148/151 (98%)
Frame = -2
Query: 911 MASNSLMSCGIAAVYPSLLSSSKSKFVSSGFALPNAGNVGRIRMAAHWMPGEPRPAYLDG 732
MASNSLMSCGIAAVYPSLLSSSKSKFVS+G LPNAGNVGRIRMAAHWMPGEPRPAYLDG
Sbjct: 1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVPLPNAGNVGRIRMAAHWMPGEPRPAYLDG 60
Query: 731 SAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 552
SAPGDFGFDPLGLGEVP NLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA
Sbjct: 61 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 120
Query: 551 VPGGQATYLGNPVPWGTLPTILAIEFLAIAF 459
+PGGQATYLGNPVPWGTLPTILAIEFLAIAF
Sbjct: 121 LPGGQATYLGNPVPWGTLPTILAIEFLAIAF 151
Score = 116 bits (289), Expect = 3e-026
Identities = 54/57 (94%)
Frame = -2
Query: 356 ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHKNIGDIVIPLN* 186
ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH NIGDIVIP N*
Sbjct: 152 ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIPFN* 208
>TAIR9_protein||AT3G54890.3 | Symbols: LHCA1 | LHCA1; chlorophyll binding |
chr3:20339961-20340922 REVERSE
Length = 165
Score = 300 bits (768), Expect = 8e-082
Identities = 143/148 (96%), Positives = 145/148 (97%)
Frame = -2
Query: 911 MASNSLMSCGIAAVYPSLLSSSKSKFVSSGFALPNAGNVGRIRMAAHWMPGEPRPAYLDG 732
MASNSLMSCGIAAVYPSLLSSSKSKFVS+G LPNAGNVGRIRMAAHWMPGEPRPAYLDG
Sbjct: 1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVPLPNAGNVGRIRMAAHWMPGEPRPAYLDG 60
Query: 731 SAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 552
SAPGDFGFDPLGLGEVP NLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA
Sbjct: 61 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 120
Query: 551 VPGGQATYLGNPVPWGTLPTILAIEFLA 468
+PGGQATYLGNPVPWGTLPTILAIEFLA
Sbjct: 121 LPGGQATYLGNPVPWGTLPTILAIEFLA 148
>TAIR9_protein||AT4G10340.1 | Symbols: LHCB5 | LHCB5 (LIGHT HARVESTING COMPLEX
OF PHOTOSYSTEM II 5); chlorophyll binding | chr4:6408200-6409496
FORWARD
Length = 281
Score = 151 bits (379), Expect = 1e-036
Identities = 84/192 (43%), Positives = 115/192 (59%), Gaps = 12/192 (6%)
Frame = -2
Query: 749 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 579
P YL+G GD+G+DP GLG+ PEN +Y+ ELIH RWAML G ++PEAL YG
Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
Query: 578 -----WVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR-SMEKDPEKK 417
W K + G Y G +P + ++A E + + E+ R + D E K
Sbjct: 142 GPEAVWFKTGA-LLLDGNTLNYFGKNIPINLVLAVVA-EVVLLGGAEYYRITNGLDFEDK 199
Query: 416 KYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 237
+PGG FDPLG +KDP++ LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 200 LHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFI-QAYVTGEGPVENLAKHL 258
Query: 236 ADPWHKNIGDIV 201
+DP+ N+ ++
Sbjct: 259 SDPFGNNLLTVI 270
>TAIR9_protein||AT3G61470.1 | Symbols: LHCA2 | LHCA2; chlorophyll binding |
chr3:22745736-22747032 FORWARD
Length = 258
Score = 149 bits (375), Expect = 3e-036
Identities = 102/263 (38%), Positives = 132/263 (50%), Gaps = 43/263 (16%)
Frame = -2
Query: 911 MASNSLMSCGIAAV-YPSLLSSS----KSKFVSSGFALPNAGNVGRIRMAAH------WM 765
MAS+ S IAA+ PS L K K + P+A +R A W
Sbjct: 1 MASSLCASSAIAAISSPSFLGGKKLRLKKKLTVPAVSRPDAS----VRAVAADPDRPIWF 56
Query: 764 PGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGY 585
PG P +LDGS PGDFGFDPLGL P++L+ ++E++HCRWAML GI +PE L
Sbjct: 57 PGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTK 116
Query: 584 GNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR--------SMEKD 429
+ W G+ Y + T+ +E + I + E +R S+ D
Sbjct: 117 IGILNTPSW--YTAGEQEYFTDKT------TLFVVELILIGWAEGRRWADIIKPGSVNTD 168
Query: 428 P---------EKKKYPGGA-FDPLGY-SKDPKKFEELKVKEIKNGRLALLAFVGFCVQQS 282
P YPGG FDPLG+ S P K +EL+ KEIKNGRLA+LA +G Q
Sbjct: 169 PVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQH- 227
Query: 281 AYPGTGPLENLATHLADPWHKNI 213
Y GTGP++NL HLADP H I
Sbjct: 228 IYTGTGPIDNLFAHLADPGHATI 250
>TAIR9_protein||AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | CAB3 (CHLOROPHYLL
A/B BINDING PROTEIN 3); chlorophyll binding | chr1:10472443-10473246
REVERSE
Length = 268
Score = 144 bits (361), Expect = 1e-034
Identities = 87/191 (45%), Positives = 107/191 (56%), Gaps = 15/191 (7%)
Frame = -2
Query: 749 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 591
P+YL G PGD+G+D GL PE R +E E+IH RWAML G + PE L
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 590 GYGNWVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQRSMEKDP--- 426
G W KA GG YLGNP V ++ I A + + + VE R P
Sbjct: 127 GEAVWFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 185
Query: 425 -EKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 249
E YPGG+FDPLG + DP+ F ELKVKE+KNGRLA+ + GF V Q+ G GP+ENL
Sbjct: 186 AEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENL 244
Query: 248 ATHLADPWHKN 216
A HLADP + N
Sbjct: 245 ADHLADPVNNN 255
>TAIR9_protein||AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | CAB2 (CHLOROPHYLL
A/B-BINDING PROTEIN 2); chlorophyll binding | chr1:10475089-10475892
REVERSE
Length = 268
Score = 144 bits (361), Expect = 1e-034
Identities = 87/191 (45%), Positives = 107/191 (56%), Gaps = 15/191 (7%)
Frame = -2
Query: 749 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 591
P+YL G PGD+G+D GL PE R +E E+IH RWAML G + PE L
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 590 GYGNWVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQRSMEKDP--- 426
G W KA GG YLGNP V ++ I A + + + VE R P
Sbjct: 127 GEAVWFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 185
Query: 425 -EKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 249
E YPGG+FDPLG + DP+ F ELKVKE+KNGRLA+ + GF V Q+ G GP+ENL
Sbjct: 186 AEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENL 244
Query: 248 ATHLADPWHKN 216
A HLADP + N
Sbjct: 245 ADHLADPVNNN 255
>TAIR9_protein||AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | CAB1
(CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding |
chr1:10478071-10478874 FORWARD
Length = 268
Score = 144 bits (361), Expect = 1e-034
Identities = 87/191 (45%), Positives = 107/191 (56%), Gaps = 15/191 (7%)
Frame = -2
Query: 749 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 591
P+YL G PGD+G+D GL PE R +E E+IH RWAML G + PE L
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 590 GYGNWVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQRSMEKDP--- 426
G W KA GG YLGNP V ++ I A + + + VE R P
Sbjct: 127 GEAVWFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 185
Query: 425 -EKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 249
E YPGG+FDPLG + DP+ F ELKVKE+KNGRLA+ + GF V Q+ G GP+ENL
Sbjct: 186 AEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENL 244
Query: 248 ATHLADPWHKN 216
A HLADP + N
Sbjct: 245 ADHLADPVNNN 255
>TAIR9_protein||AT1G45474.1 | Symbols: LHCA5 | LHCA5; pigment binding |
chr1:17179353-17180439 FORWARD
Length = 257
Score = 141 bits (354), Expect = 9e-034
Identities = 85/212 (40%), Positives = 118/212 (55%), Gaps = 35/212 (16%)
Frame = -2
Query: 776 AHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPE 597
A W+PG P YLDG+ GD+GFDPLGLGE PE+L+ Y ++EL+H R+AML V GIL +
Sbjct: 47 ATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTD 106
Query: 596 AL---GYGNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME--- 435
L G N E AV + + T++ ++FL + F E +R M+
Sbjct: 107 LLRTTGIRNLPVWYEAGAV----------KFDFASTKTLIVVQFLLMGFAETKRYMDFVS 156
Query: 434 -----------------KDPEKKKYPGG-AFDPLGYSKDPKKFEELKVKEIKNGRLALLA 309
+ + YPGG +PLG +KD + + K+KEIKNGRLA++A
Sbjct: 157 PGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMA 216
Query: 308 FVGFCVQQSAYPGTGPLENLATHLADPWHKNI 213
+GF VQ S TGP++NL HL++PWHK I
Sbjct: 217 MLGFFVQASV-THTGPIDNLVEHLSNPWHKTI 247
>TAIR9_protein||AT1G45474.2 | Symbols: LHCA5 | LHCA5; pigment binding |
chr1:17179353-17180439 FORWARD
Length = 257
Score = 141 bits (354), Expect = 9e-034
Identities = 85/212 (40%), Positives = 118/212 (55%), Gaps = 35/212 (16%)
Frame = -2
Query: 776 AHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPE 597
A W+PG P YLDG+ GD+GFDPLGLGE PE+L+ Y ++EL+H R+AML V GIL +
Sbjct: 47 ATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTD 106
Query: 596 AL---GYGNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME--- 435
L G N E AV + + T++ ++FL + F E +R M+
Sbjct: 107 LLRTTGIRNLPVWYEAGAV----------KFDFASTKTLIVVQFLLMGFAETKRYMDFVS 156
Query: 434 -----------------KDPEKKKYPGG-AFDPLGYSKDPKKFEELKVKEIKNGRLALLA 309
+ + YPGG +PLG +KD + + K+KEIKNGRLA++A
Sbjct: 157 PGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMA 216
Query: 308 FVGFCVQQSAYPGTGPLENLATHLADPWHKNI 213
+GF VQ S TGP++NL HL++PWHK I
Sbjct: 217 MLGFFVQASV-THTGPIDNLVEHLSNPWHKTI 247
>TAIR9_protein||AT3G47470.1 | Symbols: LHCA4, CAB4 | LHCA4 (LIGHT-HARVESTING
CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4); chlorophyll binding |
chr3:17493622-17494773 REVERSE
Length = 252
Score = 133 bits (333), Expect = 2e-031
Identities = 80/193 (41%), Positives = 107/193 (55%), Gaps = 10/193 (5%)
Frame = -2
Query: 770 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 591
W+PG P YL GS GD GFDPLGL E PENL+ + ++EL++ RWAML V G+L+PE
Sbjct: 57 WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVF 116
Query: 590 GYGNWVKAQEWAAVPGGQATYLGNPVPWGTLPTIL--AIEFLAIAFVEHQRSMEKDPEKK 417
+ EW G+ Y + + IL +E +++ S+ +DP K
Sbjct: 117 TKIGIINVPEW--YDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 174
Query: 416 KY--PGGAFDPLGYSKDPKKF---EELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 252
+Y P G G +P F +E K KE+ NGRLA+LAF+GF VQ + G GP EN
Sbjct: 175 QYSLPKGEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNV-TGKGPFEN 233
Query: 251 LATHLADPWHKNI 213
L HL+DPWH I
Sbjct: 234 LLQHLSDPWHNTI 246
>TAIR9_protein||AT2G40100.1 | Symbols: LHCB4.3 | LHCB4.3 (light harvesting
complex PSII); chlorophyll binding | chr2:16745884-16747190 FORWARD
Length = 277
Score = 127 bits (319), Expect = 1e-029
Identities = 68/144 (47%), Positives = 98/144 (68%), Gaps = 4/144 (2%)
Frame = -2
Query: 674 LERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAAVPGGQATYLGNPVPWGTLP 495
++R++E ELIH RWAML G + EAL W A + V G ++YLG P+P+ +L
Sbjct: 134 IQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEG--SSYLGQPLPF-SLT 190
Query: 494 TILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLAL 315
T++ IE L + ++E QR+ E DPEK+ YPGG FDPLG + DP+K + LK+ EIK+ RLA+
Sbjct: 191 TLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAM 250
Query: 314 LAFVGFCVQQSAYPGTGPLENLAT 243
+AF+ F + Q+A+ G GP+ LAT
Sbjct: 251 VAFLIFAL-QAAFTGKGPVSFLAT 273
>TAIR9_protein||AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | LHB1B1; chlorophyll
binding | chr2:14524818-14525618 FORWARD
Length = 267
Score = 97 bits (240), Expect = 1e-020
Identities = 65/144 (45%), Positives = 81/144 (56%), Gaps = 12/144 (8%)
Frame = -2
Query: 629 MLAVPGILVPEALGYGNWVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFV 456
+LA G+ EA+ W KA GG YLGNP V ++ I A + + + V
Sbjct: 117 LLARNGVKFGEAV----WFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAV 171
Query: 455 EHQRSMEKDP----EKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQ 288
E R P E YPGG+FDPLG + DP+ F ELKVKE+KNGRLA+ + GF V
Sbjct: 172 EGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV- 230
Query: 287 QSAYPGTGPLENLATHLADPWHKN 216
Q+ G GPLENLA HLADP + N
Sbjct: 231 QAIVTGKGPLENLADHLADPVNNN 254
>TAIR9_protein||AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | LHB1B2; chlorophyll
binding | chr2:14522716-14523513 REVERSE
Length = 266
Score = 97 bits (240), Expect = 1e-020
Identities = 65/144 (45%), Positives = 81/144 (56%), Gaps = 12/144 (8%)
Frame = -2
Query: 629 MLAVPGILVPEALGYGNWVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFV 456
+LA G+ EA+ W KA GG YLGNP V ++ I A + + + V
Sbjct: 116 LLARNGVKFGEAV----WFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAV 170
Query: 455 EHQRSMEKDP----EKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQ 288
E R P E YPGG+FDPLG + DP+ F ELKVKE+KNGRLA+ + GF V
Sbjct: 171 EGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV- 229
Query: 287 QSAYPGTGPLENLATHLADPWHKN 216
Q+ G GPLENLA HLADP + N
Sbjct: 230 QAIVTGKGPLENLADHLADPVNNN 253
>TAIR9_protein||AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | LHCB2.1; chlorophyll
binding | chr2:1823449-1824331 REVERSE
Length = 266
Score = 92 bits (228), Expect = 4e-019
Identities = 61/144 (42%), Positives = 79/144 (54%), Gaps = 15/144 (10%)
Frame = -2
Query: 617 PGILVPEALGYGN--WVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEH 450
P IL + +G W KA GG YLGNP + ++ I A++ + + F+E
Sbjct: 115 PEILSKNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFIEG 173
Query: 449 QR------SMEKDPEKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQ 288
R DP YPGGAFDPL ++DP+ F ELKVKE+KNGRLA+ + GF V
Sbjct: 174 YRIGGGPLGEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFV- 229
Query: 287 QSAYPGTGPLENLATHLADPWHKN 216
Q+ G GP+ENL HLADP N
Sbjct: 230 QAIVTGKGPIENLFDHLADPVANN 253
>TAIR9_protein||AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | LHCB2.2; chlorophyll
binding | chr2:1799436-1800329 REVERSE
Length = 266
Score = 92 bits (228), Expect = 4e-019
Identities = 61/144 (42%), Positives = 79/144 (54%), Gaps = 15/144 (10%)
Frame = -2
Query: 617 PGILVPEALGYGN--WVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEH 450
P IL + +G W KA GG YLGNP + ++ I A++ + + F+E
Sbjct: 115 PEILSKNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFIEG 173
Query: 449 QR------SMEKDPEKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQ 288
R DP YPGGAFDPL ++DP+ F ELKVKE+KNGRLA+ + GF V
Sbjct: 174 YRIGGGPLGEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFV- 229
Query: 287 QSAYPGTGPLENLATHLADPWHKN 216
Q+ G GP+ENL HLADP N
Sbjct: 230 QAIVTGKGPIENLFDHLADPVANN 253
>TAIR9_protein||AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | LHCB2.3;
chlorophyll binding | chr3:10256002-10256921 FORWARD
Length = 267
Score = 90 bits (222), Expect = 2e-018
Identities = 60/144 (41%), Positives = 78/144 (54%), Gaps = 15/144 (10%)
Frame = -2
Query: 617 PGILVPEALGYGN--WVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEH 450
P IL + +G W KA GG YLGNP + ++ I A + + + F+E
Sbjct: 116 PEILSKNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFIEG 174
Query: 449 QR------SMEKDPEKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQ 288
R DP YPGGAFDPL ++DP+ F ELKVKE+KNGRLA+ + GF V
Sbjct: 175 YRIGGGPLGEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFV- 230
Query: 287 QSAYPGTGPLENLATHLADPWHKN 216
Q+ G GP+ENL H+ADP N
Sbjct: 231 QAIVTGKGPIENLFDHIADPVANN 254
>TAIR9_protein||AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | LHCA6; chlorophyll
binding | chr1:6612806-6613799 FORWARD
Length = 271
Score = 90 bits (221), Expect = 2e-018
Identities = 39/71 (54%), Positives = 50/71 (70%)
Frame = -2
Query: 770 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 591
W PG P +LDGS PGDFGFDPLGLG P+ L+ + ++ELIH RWAMLAV GI++PE L
Sbjct: 68 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECL 127
Query: 590 GYGNWVKAQEW 558
+++ W
Sbjct: 128 ERLGFIENFSW 138
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,093,658,928
Number of Sequences: 33410
Number of Extensions: 12093658928
Number of Successful Extensions: 386572036
Number of sequences better than 0.0: 0
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