BLASTX 7.6.2
Query= UN23467 /QuerySize=969
(968 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G19730.1 | Symbols: | 60S ribosomal protein L... 256 2e-068
TAIR9_protein||AT2G19730.2 | Symbols: | 60S ribosomal protein L... 256 2e-068
TAIR9_protein||AT2G19730.3 | Symbols: | 60S ribosomal protein L... 256 2e-068
TAIR9_protein||AT4G29410.1 | Symbols: | 60S ribosomal protein L... 251 7e-067
TAIR9_protein||AT4G29410.2 | Symbols: | 60S ribosomal protein L... 251 7e-067
TAIR9_protein||AT4G03280.1 | Symbols: PETC, PGR1 | PETC (PHOTOSY... 117 1e-026
TAIR9_protein||AT4G03280.2 | Symbols: PETC, PGR1 | PETC (PHOTOSY... 92 4e-019
>TAIR9_protein||AT2G19730.1 | Symbols: | 60S ribosomal protein L28 (RPL28A) |
chr2:8511752-8512995 FORWARD
Length = 144
Score = 256 bits (653), Expect = 2e-068
Identities = 128/144 (88%), Positives = 135/144 (93%)
Frame = +3
Query: 324 MATVPGQLVWEIVKRNNCFLVKQFGRGNAKVQFSKEKNNLCNLNSYKHSGLANKKTVTIQ 503
MATVPGQL+WEIVK NNCFLVKQFGRGN+KVQFSKE NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60
Query: 504 PADKEQGVVLATTKTKKQNKPKVSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKFALA 683
ADK+Q VVLATTKTKKQNKPK+SVNKSILKKEFPRMSKAVANQVVDNYYRPDLKK ALA
Sbjct: 61 AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120
Query: 684 RLSVISKSIRVAKSGAKQRNRQA* 755
RLS ISK +RVAKSGAKQRNRQA*
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA* 144
>TAIR9_protein||AT2G19730.2 | Symbols: | 60S ribosomal protein L28 (RPL28A) |
chr2:8511752-8512995 FORWARD
Length = 144
Score = 256 bits (653), Expect = 2e-068
Identities = 128/144 (88%), Positives = 135/144 (93%)
Frame = +3
Query: 324 MATVPGQLVWEIVKRNNCFLVKQFGRGNAKVQFSKEKNNLCNLNSYKHSGLANKKTVTIQ 503
MATVPGQL+WEIVK NNCFLVKQFGRGN+KVQFSKE NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60
Query: 504 PADKEQGVVLATTKTKKQNKPKVSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKFALA 683
ADK+Q VVLATTKTKKQNKPK+SVNKSILKKEFPRMSKAVANQVVDNYYRPDLKK ALA
Sbjct: 61 AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120
Query: 684 RLSVISKSIRVAKSGAKQRNRQA* 755
RLS ISK +RVAKSGAKQRNRQA*
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA* 144
>TAIR9_protein||AT2G19730.3 | Symbols: | 60S ribosomal protein L28 (RPL28A) |
chr2:8511752-8512995 FORWARD
Length = 144
Score = 256 bits (653), Expect = 2e-068
Identities = 128/144 (88%), Positives = 135/144 (93%)
Frame = +3
Query: 324 MATVPGQLVWEIVKRNNCFLVKQFGRGNAKVQFSKEKNNLCNLNSYKHSGLANKKTVTIQ 503
MATVPGQL+WEIVK NNCFLVKQFGRGN+KVQFSKE NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60
Query: 504 PADKEQGVVLATTKTKKQNKPKVSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKFALA 683
ADK+Q VVLATTKTKKQNKPK+SVNKSILKKEFPRMSKAVANQVVDNYYRPDLKK ALA
Sbjct: 61 AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120
Query: 684 RLSVISKSIRVAKSGAKQRNRQA* 755
RLS ISK +RVAKSGAKQRNRQA*
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA* 144
>TAIR9_protein||AT4G29410.1 | Symbols: | 60S ribosomal protein L28 (RPL28C) |
chr4:14468439-14469964 REVERSE
Length = 144
Score = 251 bits (639), Expect = 7e-067
Identities = 125/144 (86%), Positives = 132/144 (91%)
Frame = +3
Query: 324 MATVPGQLVWEIVKRNNCFLVKQFGRGNAKVQFSKEKNNLCNLNSYKHSGLANKKTVTIQ 503
MATVPGQL+WEIVKRNNCFLVKQFGRGNAKVQFSKE NNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1 MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60
Query: 504 PADKEQGVVLATTKTKKQNKPKVSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKFALA 683
A K+QGVVL TTKTK+QNKPK+SVNKSILKKEF RMSK VANQVVDNYYRPDLKK ALA
Sbjct: 61 AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120
Query: 684 RLSVISKSIRVAKSGAKQRNRQA* 755
RLS ISK +RVAKSG K+RNRQA*
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA* 144
>TAIR9_protein||AT4G29410.2 | Symbols: | 60S ribosomal protein L28 (RPL28C) |
chr4:14468439-14469964 REVERSE
Length = 144
Score = 251 bits (639), Expect = 7e-067
Identities = 125/144 (86%), Positives = 132/144 (91%)
Frame = +3
Query: 324 MATVPGQLVWEIVKRNNCFLVKQFGRGNAKVQFSKEKNNLCNLNSYKHSGLANKKTVTIQ 503
MATVPGQL+WEIVKRNNCFLVKQFGRGNAKVQFSKE NNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1 MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60
Query: 504 PADKEQGVVLATTKTKKQNKPKVSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKFALA 683
A K+QGVVL TTKTK+QNKPK+SVNKSILKKEF RMSK VANQVVDNYYRPDLKK ALA
Sbjct: 61 AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120
Query: 684 RLSVISKSIRVAKSGAKQRNRQA* 755
RLS ISK +RVAKSG K+RNRQA*
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA* 144
>TAIR9_protein||AT4G03280.1 | Symbols: PETC, PGR1 | PETC (PHOTOSYNTHETIC
ELECTRON TRANSFER C); electron transporter, transferring electrons from
cytochrome b6/f complex of photosystem II | chr4:1440314-1441717
FORWARD
Length = 230
Score = 117 bits (293), Expect = 1e-026
Identities = 62/77 (80%), Positives = 71/77 (92%), Gaps = 2/77 (2%)
Frame = +3
Query: 36 MASSPISPATQLGSSRSATMLAMSRGMMFVKPTRTSHQMVRKEKIGLRIACQATSIPADN 215
MASS +SPATQLGSSRSA ++AMS G +FVKPT+ +HQMVRKEKIGLRI+CQA+SIPAD
Sbjct: 1 MASSSLSPATQLGSSRSA-LMAMSSG-LFVKPTKMNHQMVRKEKIGLRISCQASSIPADR 58
Query: 216 VPDMEKRKTLNLLLVGA 266
VPDMEKRKTLNLLL+GA
Sbjct: 59 VPDMEKRKTLNLLLLGA 75
>TAIR9_protein||AT4G03280.2 | Symbols: PETC, PGR1 | PETC (PHOTOSYNTHETIC
ELECTRON TRANSFER C); electron transporter, transferring electrons from
cytochrome b6/f complex of photosystem II | chr4:1440462-1441717
FORWARD
Length = 211
Score = 92 bits (227), Expect = 4e-019
Identities = 46/56 (82%), Positives = 52/56 (92%), Gaps = 1/56 (1%)
Frame = +3
Query: 99 AMSRGMMFVKPTRTSHQMVRKEKIGLRIACQATSIPADNVPDMEKRKTLNLLLVGA 266
AMS G +FVKPT+ +HQMVRKEKIGLRI+CQA+SIPAD VPDMEKRKTLNLLL+GA
Sbjct: 2 AMSSG-LFVKPTKMNHQMVRKEKIGLRISCQASSIPADRVPDMEKRKTLNLLLLGA 56
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,093,658,928
Number of Sequences: 33410
Number of Extensions: 12093658928
Number of Successful Extensions: 386572036
Number of sequences better than 0.0: 0
|
