BLASTX 7.6.2
Query= UN23822 /QuerySize=546
(545 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|2833375|sp|Q39290.1|RPAB5_BRANA RecName: Full=DNA-directed RN... 141 6e-032
gi|30682258|ref|NP_849640.1| DNA-directed RNA Polymerase II subu... 137 1e-030
gi|226528766|ref|NP_001148175.1| DNA-directed RNA polymerase II ... 133 2e-029
gi|224069248|ref|XP_002326311.1| predicted protein [Populus tric... 131 5e-029
gi|226506188|ref|NP_001152395.1| LOC100286035 [Zea mays] 131 5e-029
gi|225425585|ref|XP_002263065.1| PREDICTED: hypothetical protein... 131 5e-029
gi|226510500|ref|NP_001149707.1| DNA-directed RNA polymerase II ... 131 6e-029
gi|102139964|gb|ABF70104.1| DNA-directed RNA polymerase II 8.2 k... 131 8e-029
gi|116778557|gb|ABK20909.1| unknown [Picea sitchensis] 130 1e-028
gi|115484555|ref|NP_001067421.1| Os11g0194800 [Oryza sativa Japo... 130 1e-028
gi|115487650|ref|NP_001066312.1| Os12g0180400 [Oryza sativa Japo... 130 1e-028
gi|255631340|gb|ACU16037.1| unknown [Glycine max] 130 1e-028
gi|326497947|dbj|BAJ94836.1| predicted protein [Hordeum vulgare ... 129 2e-028
gi|168033365|ref|XP_001769186.1| predicted protein [Physcomitrel... 129 2e-028
gi|15220572|ref|NP_176363.1| DNA-directed RNA polymerases II sub... 128 4e-028
gi|226505876|ref|NP_001151378.1| DNA-directed RNA polymerase II ... 127 9e-028
gi|66823991|ref|XP_645350.1| RNA polymerase N/8 kDa subunit [Dic... 126 3e-027
gi|255086357|ref|XP_002509145.1| predicted protein [Micromonas s... 125 3e-027
gi|222615665|gb|EEE51797.1| hypothetical protein OsJ_33258 [Oryz... 125 4e-027
gi|255583986|ref|XP_002532739.1| DNA-directed RNA polymerase II,... 125 4e-027
>gi|2833375|sp|Q39290.1|RPAB5_BRANA RecName: Full=DNA-directed RNA polymerases
I, II, and III subunit RPABC5; Short=RNA polymerases I, II, and III
subunit ABC5; AltName: Full=ABC10; AltName: Full=DNA-directed RNA
polymerase III subunit L; AltName: Full=RPB10 homolog
Length = 71
Score = 141 bits (354), Expect = 6e-032
Identities = 68/70 (97%), Gaps = 1/70 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNL RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 60
Query: 225 NY-TLEKSDN 199
NY TLEKSDN
Sbjct: 61 NYNTLEKSDN 70
>gi|30682258|ref|NP_849640.1| DNA-directed RNA Polymerase II subunit L
[Arabidopsis thaliana]
Length = 71
Score = 137 bits (343), Expect = 1e-030
Identities = 66/70 (94%), Gaps = 1/70 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIPVRCFTCGKVIGNKWD YLDLLQLDYTEGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60
Query: 225 NY-TLEKSDN 199
NY TLEKSDN
Sbjct: 61 NYNTLEKSDN 70
>gi|226528766|ref|NP_001148175.1| DNA-directed RNA polymerase II 8.2 kDa
polypeptide [Zea mays]
Length = 242
Score = 133 bits (333), Expect = 2e-029
Identities = 63/70 (90%), Positives = 66/70 (94%), Gaps = 1/70 (1%)
Frame = -3
Query: 408 KMIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKL 229
KMIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LFRYCCRRMLMTHVDLIEKL
Sbjct: 171 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 230
Query: 228 LNY-TLEKSD 202
LNY TLEK++
Sbjct: 231 LNYNTLEKTE 240
>gi|224069248|ref|XP_002326311.1| predicted protein [Populus trichocarpa]
Length = 71
Score = 131 bits (329), Expect = 5e-029
Identities = 63/69 (91%), Positives = 64/69 (92%), Gaps = 1/69 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIPVRCFTCGKVIGNKWD YLDLLQ DYTEGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 225 NY-TLEKSD 202
NY TLEKS+
Sbjct: 61 NYNTLEKSE 69
>gi|226506188|ref|NP_001152395.1| LOC100286035 [Zea mays]
Length = 71
Score = 131 bits (329), Expect = 5e-029
Identities = 62/69 (89%), Positives = 65/69 (94%), Gaps = 1/69 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LFRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDVYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 60
Query: 225 NY-TLEKSD 202
NY TLEK++
Sbjct: 61 NYNTLEKTE 69
>gi|225425585|ref|XP_002263065.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 71
Score = 131 bits (329), Expect = 5e-029
Identities = 63/69 (91%), Positives = 64/69 (92%), Gaps = 1/69 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIPVRCFTCGKVIGNKWD YLDLLQ DYTEGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 225 NY-TLEKSD 202
NY TLEKS+
Sbjct: 61 NYNTLEKSE 69
>gi|226510500|ref|NP_001149707.1| DNA-directed RNA polymerase II 8.2 kDa
polypeptide [Zea mays]
Length = 71
Score = 131 bits (328), Expect = 6e-029
Identities = 62/69 (89%), Positives = 65/69 (94%), Gaps = 1/69 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LFRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 60
Query: 225 NY-TLEKSD 202
NY TLEK++
Sbjct: 61 NYNTLEKTE 69
>gi|102139964|gb|ABF70104.1| DNA-directed RNA polymerase II 8.2 kDa polypeptide,
putative [Musa balbisiana]
Length = 70
Score = 131 bits (327), Expect = 8e-029
Identities = 62/70 (88%), Positives = 65/70 (92%), Gaps = 1/70 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIPVRCFTCGKVIGNKWD YLDLLQ DYTEGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 225 NY-TLEKSDN 199
NY TLEK+++
Sbjct: 61 NYNTLEKTES 70
>gi|116778557|gb|ABK20909.1| unknown [Picea sitchensis]
Length = 71
Score = 130 bits (326), Expect = 1e-028
Identities = 62/69 (89%), Positives = 64/69 (92%), Gaps = 1/69 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIPVRCFTCGKVIGNKWD YLDLLQ DYTEGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 225 NY-TLEKSD 202
NY TLE+S+
Sbjct: 61 NYNTLERSE 69
>gi|115484555|ref|NP_001067421.1| Os11g0194800 [Oryza sativa Japonica Group]
Length = 74
Score = 130 bits (325), Expect = 1e-028
Identities = 62/69 (89%), Positives = 64/69 (92%), Gaps = 1/69 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIPVRCFTCGKVIGNKWD YLDLLQ DYTEGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDLYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 225 NY-TLEKSD 202
NY TLEK++
Sbjct: 61 NYNTLEKTE 69
>gi|115487650|ref|NP_001066312.1| Os12g0180400 [Oryza sativa Japonica Group]
Length = 72
Score = 130 bits (325), Expect = 1e-028
Identities = 62/69 (89%), Positives = 64/69 (92%), Gaps = 1/69 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIPVRCFTCGKVIGNKWD YLDLLQ DYTEGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDLYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 225 NY-TLEKSD 202
NY TLEK++
Sbjct: 61 NYNTLEKTE 69
>gi|255631340|gb|ACU16037.1| unknown [Glycine max]
Length = 71
Score = 130 bits (325), Expect = 1e-028
Identities = 62/69 (89%), Positives = 64/69 (92%), Gaps = 1/69 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQSDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 225 NY-TLEKSD 202
NY TL+KSD
Sbjct: 61 NYNTLDKSD 69
>gi|326497947|dbj|BAJ94836.1| predicted protein [Hordeum vulgare subsp.
vulgare]
Length = 71
Score = 129 bits (324), Expect = 2e-028
Identities = 62/69 (89%), Positives = 64/69 (92%), Gaps = 1/69 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIPVRCFTCGKVIGNKWD YLDLLQ DYTEGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 225 NY-TLEKSD 202
NY TLEK++
Sbjct: 61 NYNTLEKTE 69
>gi|168033365|ref|XP_001769186.1| predicted protein [Physcomitrella patens
subsp. patens]
Length = 73
Score = 129 bits (323), Expect = 2e-028
Identities = 61/70 (87%), Positives = 65/70 (92%), Gaps = 1/70 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALALVRYCCRRMLMTHVDLIEKLL 60
Query: 225 NY-TLEKSDN 199
NY TLE+++N
Sbjct: 61 NYNTLERNEN 70
>gi|15220572|ref|NP_176363.1| DNA-directed RNA polymerases II subunit L
[Arabidopsis thaliana]
Length = 71
Score = 128 bits (321), Expect = 4e-028
Identities = 60/69 (86%), Positives = 63/69 (91%), Gaps = 1/69 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MI+PVRCFTCGKVIGNKWD YL+LLQ DY EGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 225 NY-TLEKSD 202
NY T+EKSD
Sbjct: 61 NYNTMEKSD 69
>gi|226505876|ref|NP_001151378.1| DNA-directed RNA polymerase II 8.2 kDa
polypeptide [Zea mays]
Length = 84
Score = 127 bits (318), Expect = 9e-028
Identities = 58/62 (93%), Positives = 59/62 (95%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LFRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKLL 60
Query: 225 NY 220
NY
Sbjct: 61 NY 62
>gi|66823991|ref|XP_645350.1| RNA polymerase N/8 kDa subunit [Dictyostelium
discoideum AX4]
Length = 70
Score = 126 bits (314), Expect = 3e-027
Identities = 58/63 (92%), Positives = 60/63 (95%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIPVRCFTCGKVIGNKWDAYL LLQ+DYTEGDALDAL L RYCCRRML+THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLSLLQIDYTEGDALDALCLKRYCCRRMLLTHVDLIEKLL 60
Query: 225 NYT 217
NYT
Sbjct: 61 NYT 63
>gi|255086357|ref|XP_002509145.1| predicted protein [Micromonas sp. RCC299]
Length = 69
Score = 125 bits (313), Expect = 3e-027
Identities = 60/69 (86%), Positives = 62/69 (89%), Gaps = 1/69 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIPVRCFTCGKVIGNKWD YLDLLQ DYTE DALDAL+L RYCCRRMLM HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTERDALDALDLHRYCCRRMLMCHVDLIEKLL 60
Query: 225 NY-TLEKSD 202
NY TLE+ D
Sbjct: 61 NYNTLERQD 69
>gi|222615665|gb|EEE51797.1| hypothetical protein OsJ_33258 [Oryza sativa
Japonica Group]
Length = 74
Score = 125 bits (312), Expect = 4e-027
Identities = 61/69 (88%), Positives = 63/69 (91%), Gaps = 1/69 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIPVRCFTCGKVIGNK D YLDLLQ DYTEGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKGDLYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 225 NY-TLEKSD 202
NY TLEK++
Sbjct: 61 NYNTLEKTE 69
>gi|255583986|ref|XP_002532739.1| DNA-directed RNA polymerase II, subunit n,
putative [Ricinus communis]
Length = 76
Score = 125 bits (312), Expect = 4e-027
Identities = 57/62 (91%), Positives = 58/62 (93%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 225 NY 220
NY
Sbjct: 61 NY 62
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,844,195,214,508
Number of Sequences: 15229318
Number of Extensions: 2844195214508
Number of Successful Extensions: 670869000
Number of sequences better than 0.0: 0
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