BLASTX 7.6.2
Query= UN23822 /QuerySize=546
(545 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q39290|RPAB5_BRANA DNA-directed RNA polymerases I, II, and II... 141 3e-033
sp|Q9SYA6|RPAB5_ARATH DNA-directed RNA polymerases I, II, and II... 128 2e-029
sp|Q55AB6|RPAB5_DICDI DNA-directed RNA polymerases I, II, and II... 126 1e-028
sp|Q32P78|RPAB5_BOVIN DNA-directed RNA polymerases I, II, and II... 118 2e-026
sp|Q6QN04|RPAB5_CHILA DNA-directed RNA polymerases I, II, and II... 118 2e-026
sp|P62875|RPAB5_HUMAN DNA-directed RNA polymerases I, II, and II... 118 2e-026
sp|P62876|RPAB5_MOUSE DNA-directed RNA polymerases I, II, and II... 118 2e-026
sp|Q9VC49|RPAB5_DROME DNA-directed RNA polymerases I, II, and II... 117 7e-026
sp|A8Y1E9|RPAB5_CAEBR DNA-directed RNA polymerases I, II, and II... 111 3e-024
sp|Q9GR61|RPAB5_CAEEL DNA-directed RNA polymerases I, II, and II... 111 3e-024
sp|O13877|RPAB5_SCHPO DNA-directed RNA polymerases I, II, and II... 107 4e-023
sp|Q8SRS6|RPAB5_ENCCU DNA-directed RNA polymerases I, II, and II... 85 2e-016
sp|A4YIM8|RPON_METS5 DNA-directed RNA polymerase subunit N OS=Me... 81 4e-015
sp|Q96YW4|RPON_SULTO DNA-directed RNA polymerase subunit N OS=Su... 80 7e-015
sp|Q980Z8|RPON_SULSO DNA-directed RNA polymerase subunit N OS=Su... 78 3e-014
sp|C3N058|RPON_SULIA DNA-directed RNA polymerase subunit N OS=Su... 76 1e-013
sp|C4KJ97|RPON_SULIK DNA-directed RNA polymerase subunit N OS=Su... 76 1e-013
sp|C3MJQ1|RPON_SULIL DNA-directed RNA polymerase subunit N OS=Su... 76 1e-013
sp|C3MZ09|RPON_SULIM DNA-directed RNA polymerase subunit N OS=Su... 76 1e-013
sp|C3NMP6|RPON_SULIN DNA-directed RNA polymerase subunit N OS=Su... 76 1e-013
>sp|Q39290|RPAB5_BRANA DNA-directed RNA polymerases I, II, and III subunit
RPABC5 OS=Brassica napus PE=3 SV=1
Length = 71
Score = 141 bits (354), Expect = 3e-033
Identities = 68/70 (97%), Gaps = 1/70 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNL RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 60
Query: 225 NY-TLEKSDN 199
NY TLEKSDN
Sbjct: 61 NYNTLEKSDN 70
>sp|Q9SYA6|RPAB5_ARATH DNA-directed RNA polymerases I, II, and III subunit
RPABC5 OS=Arabidopsis thaliana GN=At1g61700 PE=2 SV=1
Length = 71
Score = 128 bits (321), Expect = 2e-029
Identities = 60/69 (86%), Positives = 63/69 (91%), Gaps = 1/69 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MI+PVRCFTCGKVIGNKWD YL+LLQ DY EGDALDAL L RYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 225 NY-TLEKSD 202
NY T+EKSD
Sbjct: 61 NYNTMEKSD 69
>sp|Q55AB6|RPAB5_DICDI DNA-directed RNA polymerases I, II, and III subunit
rpabc5 OS=Dictyostelium discoideum GN=polr2l PE=3 SV=1
Length = 70
Score = 126 bits (314), Expect = 1e-028
Identities = 58/63 (92%), Positives = 60/63 (95%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIPVRCFTCGKVIGNKWDAYL LLQ+DYTEGDALDAL L RYCCRRML+THVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLSLLQIDYTEGDALDALCLKRYCCRRMLLTHVDLIEKLL 60
Query: 225 NYT 217
NYT
Sbjct: 61 NYT 63
>sp|Q32P78|RPAB5_BOVIN DNA-directed RNA polymerases I, II, and III subunit
RPABC5 OS=Bos taurus GN=POLR2L PE=3 SV=1
Length = 67
Score = 118 bits (295), Expect = 2e-026
Identities = 55/67 (82%), Positives = 60/67 (89%), Gaps = 1/67 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIPVRCFTCGK++GNKW+AYL LLQ +YTEGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 225 NYT-LEK 208
NY LEK
Sbjct: 61 NYAPLEK 67
>sp|Q6QN04|RPAB5_CHILA DNA-directed RNA polymerases I, II, and III subunit
RPABC5 OS=Chinchilla lanigera GN=POLR2L PE=3 SV=1
Length = 67
Score = 118 bits (295), Expect = 2e-026
Identities = 55/67 (82%), Positives = 60/67 (89%), Gaps = 1/67 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIPVRCFTCGK++GNKW+AYL LLQ +YTEGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 225 NYT-LEK 208
NY LEK
Sbjct: 61 NYAPLEK 67
>sp|P62875|RPAB5_HUMAN DNA-directed RNA polymerases I, II, and III subunit
RPABC5 OS=Homo sapiens GN=POLR2L PE=1 SV=1
Length = 67
Score = 118 bits (295), Expect = 2e-026
Identities = 55/67 (82%), Positives = 60/67 (89%), Gaps = 1/67 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIPVRCFTCGK++GNKW+AYL LLQ +YTEGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 225 NYT-LEK 208
NY LEK
Sbjct: 61 NYAPLEK 67
>sp|P62876|RPAB5_MOUSE DNA-directed RNA polymerases I, II, and III subunit
RPABC5 OS=Mus musculus GN=Polr2l PE=2 SV=1
Length = 67
Score = 118 bits (295), Expect = 2e-026
Identities = 55/67 (82%), Positives = 60/67 (89%), Gaps = 1/67 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIPVRCFTCGK++GNKW+AYL LLQ +YTEGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60
Query: 225 NYT-LEK 208
NY LEK
Sbjct: 61 NYAPLEK 67
>sp|Q9VC49|RPAB5_DROME DNA-directed RNA polymerases I, II, and III subunit
RPABC5 OS=Drosophila melanogaster GN=Rpb10 PE=1 SV=1
Length = 67
Score = 117 bits (291), Expect = 7e-026
Identities = 55/67 (82%), Positives = 60/67 (89%), Gaps = 1/67 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIP+RCFTCGKVIGNKW++YL LLQ +YTEGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGNKWESYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLL 60
Query: 225 NYT-LEK 208
NY LEK
Sbjct: 61 NYAPLEK 67
>sp|A8Y1E9|RPAB5_CAEBR DNA-directed RNA polymerases I, II, and III subunit
RPABC5 OS=Caenorhabditis briggsae GN=rpb-10 PE=3 SV=1
Length = 67
Score = 111 bits (277), Expect = 3e-024
Identities = 52/67 (77%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIP+RCFTCGKVIG+KW+ YL LQ +Y+EGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGDKWETYLGFLQSEYSEGDALDALGLRRYCCRRMLLAHVDLIEKLL 60
Query: 225 NY-TLEK 208
NY LEK
Sbjct: 61 NYHPLEK 67
>sp|Q9GR61|RPAB5_CAEEL DNA-directed RNA polymerases I, II, and III subunit
RPABC5 OS=Caenorhabditis elegans GN=rpb-10 PE=2 SV=1
Length = 67
Score = 111 bits (277), Expect = 3e-024
Identities = 52/67 (77%), Positives = 58/67 (86%), Gaps = 1/67 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIP+RCFTCGKVIG+KW+ YL LQ +Y+EGDALDAL L RYCCRRML+ HVDLIEKLL
Sbjct: 1 MIIPIRCFTCGKVIGDKWETYLGFLQSEYSEGDALDALGLRRYCCRRMLLAHVDLIEKLL 60
Query: 225 NY-TLEK 208
NY LEK
Sbjct: 61 NYHPLEK 67
>sp|O13877|RPAB5_SCHPO DNA-directed RNA polymerases I, II, and III subunit
RPABC5 OS=Schizosaccharomyces pombe GN=rpb10 PE=1 SV=2
Length = 71
Score = 107 bits (267), Expect = 4e-023
Identities = 51/71 (71%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIP+RCF+CGKVIG+KWD YL LLQ D TEG+ALD L L RYCCRRM++THVDLIEKLL
Sbjct: 1 MIIPIRCFSCGKVIGDKWDTYLTLLQEDNTEGEALDKLGLQRYCCRRMILTHVDLIEKLL 60
Query: 225 NYT-LEKSDNI 196
Y L K N+
Sbjct: 61 CYNPLSKQKNL 71
>sp|Q8SRS6|RPAB5_ENCCU DNA-directed RNA polymerases I, II, and III subunit
RPABC5 OS=Encephalitozoon cuniculi GN=RPB10 PE=3 SV=1
Length = 72
Score = 85 bits (209), Expect = 2e-016
Identities = 35/66 (53%), Positives = 50/66 (75%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIP+RCFTCGK I +KW+ Y +LL++D + +ALD L + R CCRRM + HVD+++KLL
Sbjct: 1 MIIPIRCFTCGKEISSKWEPYQELLKIDKGKAEALDELGMRRICCRRMFLGHVDIVDKLL 60
Query: 225 NYTLEK 208
+ + K
Sbjct: 61 KFDIVK 66
>sp|A4YIM8|RPON_METS5 DNA-directed RNA polymerase subunit N OS=Metallosphaera
sedula (strain ATCC 51363 / DSM 5348) GN=rpoN PE=3 SV=1
Length = 66
Score = 81 bits (198), Expect = 4e-015
Identities = 35/63 (55%), Positives = 46/63 (73%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIPVRCFTCG +I +KWDA+ ++ G LD LN+ R CCRR L+THVD+I +++
Sbjct: 1 MIIPVRCFTCGSLIADKWDAFSTRVRAGEDPGKVLDDLNVKRLCCRRSLLTHVDIIREVV 60
Query: 225 NYT 217
NYT
Sbjct: 61 NYT 63
>sp|Q96YW4|RPON_SULTO DNA-directed RNA polymerase subunit N OS=Sulfolobus
tokodaii GN=rpoN PE=3 SV=1
Length = 66
Score = 80 bits (196), Expect = 7e-015
Identities = 32/63 (50%), Positives = 48/63 (76%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
MIIP+RCFTCG +IG+KW+ ++ + G LD L + RYCCRRML++HVD+I++++
Sbjct: 1 MIIPIRCFTCGSLIGDKWEPFITRVSNGEDPGKVLDDLGVKRYCCRRMLLSHVDIIKEVI 60
Query: 225 NYT 217
+YT
Sbjct: 61 HYT 63
>sp|Q980Z8|RPON_SULSO DNA-directed RNA polymerase subunit N OS=Sulfolobus
solfataricus GN=rpoN PE=1 SV=1
Length = 66
Score = 78 bits (190), Expect = 3e-014
Identities = 30/63 (47%), Positives = 46/63 (73%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
M+IP+RCFTCG +I +KW +++ + G LD L + RYCCRRML++HVD+I +++
Sbjct: 1 MLIPIRCFTCGSLIADKWQSFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHVDIINEVI 60
Query: 225 NYT 217
+YT
Sbjct: 61 HYT 63
>sp|C3N058|RPON_SULIA DNA-directed RNA polymerase subunit N OS=Sulfolobus
islandicus (strain M.16.27) GN=rpoN PE=3 SV=1
Length = 66
Score = 76 bits (186), Expect = 1e-013
Identities = 29/63 (46%), Positives = 45/63 (71%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
M+IP+RCFTCG +I +KW ++ + G LD L + RYCCRRML++H+D+I +++
Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVI 60
Query: 225 NYT 217
+YT
Sbjct: 61 HYT 63
>sp|C4KJ97|RPON_SULIK DNA-directed RNA polymerase subunit N OS=Sulfolobus
islandicus (strain M.16.4 / Kamchatka #3) GN=rpoN PE=3 SV=1
Length = 66
Score = 76 bits (186), Expect = 1e-013
Identities = 29/63 (46%), Positives = 45/63 (71%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
M+IP+RCFTCG +I +KW ++ + G LD L + RYCCRRML++H+D+I +++
Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVI 60
Query: 225 NYT 217
+YT
Sbjct: 61 HYT 63
>sp|C3MJQ1|RPON_SULIL DNA-directed RNA polymerase subunit N OS=Sulfolobus
islandicus (strain L.S.2.15 / Lassen #1) GN=rpoN PE=3 SV=1
Length = 66
Score = 76 bits (186), Expect = 1e-013
Identities = 29/63 (46%), Positives = 45/63 (71%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
M+IP+RCFTCG +I +KW ++ + G LD L + RYCCRRML++H+D+I +++
Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVI 60
Query: 225 NYT 217
+YT
Sbjct: 61 HYT 63
>sp|C3MZ09|RPON_SULIM DNA-directed RNA polymerase subunit N OS=Sulfolobus
islandicus (strain M.14.25 / Kamchatka #1) GN=rpoN PE=3 SV=1
Length = 66
Score = 76 bits (186), Expect = 1e-013
Identities = 29/63 (46%), Positives = 45/63 (71%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
M+IP+RCFTCG +I +KW ++ + G LD L + RYCCRRML++H+D+I +++
Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVI 60
Query: 225 NYT 217
+YT
Sbjct: 61 HYT 63
>sp|C3NMP6|RPON_SULIN DNA-directed RNA polymerase subunit N OS=Sulfolobus
islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpoN PE=3 SV=1
Length = 66
Score = 76 bits (186), Expect = 1e-013
Identities = 29/63 (46%), Positives = 45/63 (71%)
Frame = -3
Query: 405 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLFRYCCRRMLMTHVDLIEKLL 226
M+IP+RCFTCG +I +KW ++ + G LD L + RYCCRRML++H+D+I +++
Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVI 60
Query: 225 NYT 217
+YT
Sbjct: 61 HYT 63
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,767,994,010
Number of Sequences: 518415
Number of Extensions: 98767994010
Number of Successful Extensions: 632508636
Number of sequences better than 0.0: 0
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