Library    |     Search    |     Batch query    |     SNP    |     SSR  

TAIR blast output of UN23906


BLASTX 7.6.2

Query= UN23906 /QuerySize=890
        (889 letters)

Database: TAIR9 protein;
          33,410 sequences; 13,468,323 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

TAIR9_protein||AT5G42765.1 | Symbols:  | INVOLVED IN: biological...    322   2e-088

>TAIR9_protein||AT5G42765.1 | Symbols:  | INVOLVED IN: biological_process
        unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane,
        chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
        growth stages; CONTAINS InterPro DOMAIN/s: Twin-arginine translocation
        pathway signal (InterPro:IPR006311); Has 13 Blast hits to 13 proteins
        in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
        - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
        chr5:17150505-17151641 REVERSE

          Length = 230

 Score =  322 bits (824), Expect = 2e-088
 Identities = 175/231 (75%), Positives = 197/231 (85%), Gaps = 6/231 (2%)
 Frame = +2

Query:  17 MASSALILRPFFSSLTQTCQAP--ISARTSDHHPHTLSRRDA-LSLSSASLLLFSLSPTD 187
           MA    I +PFFSS T+    P   +A+ SDH P  +SRRDA + LSSA+ LL +LSPT+
Sbjct:   1 MARLIPISQPFFSSNTKPPPPPPIAAAQISDHLPQIISRRDATVLLSSATSLLLTLSPTN 60

Query: 188 PALAF--GISGPKEWLKDQKKKSSRFLLAPIDASRESLRSVYLSLSTRESDYTDKDLESL 361
           PA AF  GISGPKEWLKDQKKKSSRFLLAPIDA+R++L+S YLSL T ESDYT+KDLE+L
Sbjct:  61 PAFAFSLGISGPKEWLKDQKKKSSRFLLAPIDATRQALQSAYLSL-TSESDYTEKDLENL 119

Query: 362 QNLLRSSARDCVPKERSSLVDFQSKTGVEVCTFKLVLKNAASLLDDKDPVILEAENILND 541
           QNL +SSARDCVPKERSSLVDFQSK+GVEVCTFKLV+KNAASLLDDKDPV LEAENIL+D
Sbjct: 120 QNLFKSSARDCVPKERSSLVDFQSKSGVEVCTFKLVVKNAASLLDDKDPVKLEAENILDD 179

Query: 542 LVRSFGSLIVLTNGIDMNLPSDRKKIADAVMESISVLDKFEKSVKDCLEI* 694
           LVRSFGSLIVLTNG+DMNLPSDRKK+AD V E+IS LDKFEK VKDCLEI*
Sbjct: 180 LVRSFGSLIVLTNGVDMNLPSDRKKVADGVTETISYLDKFEKGVKDCLEI* 230

  Database: TAIR9 protein
    Posted date:  Wed Jul 08 15:16:08 2009
  Number of letters in database: 13,468,323
  Number of sequences in database:  33,410

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,319,083,204
Number of Sequences: 33410
Number of Extensions: 12319083204
Number of Successful Extensions: 397208598
Number of sequences better than 0.0: 0