BLASTX 7.6.2
Query= UN23934 /QuerySize=876
(875 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G04600.1 | Symbols: | RNA recognition motif (... 384 6e-107
TAIR9_protein||AT3G47120.1 | Symbols: | RNA recognition motif (... 53 2e-007
TAIR9_protein||AT5G51300.1 | Symbols: | splicing factor-related... 53 2e-007
TAIR9_protein||AT5G51300.2 | Symbols: | splicing factor-related... 53 2e-007
TAIR9_protein||AT5G51300.3 | Symbols: | splicing factor-related... 53 2e-007
TAIR9_protein||AT5G47320.1 | Symbols: RPS19 | RPS19 (RIBOSOMAL P... 52 6e-007
TAIR9_protein||AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33 | SR3... 49 4e-006
TAIR9_protein||AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33 | SR3... 49 4e-006
TAIR9_protein||AT3G13570.1 | Symbols: SCL30A | SCL30a; RNA bindi... 49 4e-006
>TAIR9_protein||AT5G04600.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:1323700-1325486 FORWARD
Length = 223
Score = 384 bits (984), Expect = 6e-107
Identities = 189/224 (84%), Positives = 208/224 (92%), Gaps = 4/224 (1%)
Frame = +1
Query: 73 AKAKKALKKNMKKISASAAATSSSQLAIPQKPKPSADFLPLEGGPARKAPV-TKSIENKS 249
AKAKKALKKNMKK++ASA SSSQL +PQ PKPSADFLPLEGGPARKAPV T ++NK+
Sbjct: 3 AKAKKALKKNMKKVAASA---SSSQLPLPQNPKPSADFLPLEGGPARKAPVTTPPLQNKA 59
Query: 250 TVLYIGRLPHGFYETEIEAFFTQFGTVNRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAG 429
TVLYIGR+PHGFYETEIEAFF+QFGTV RVRVARNKKTGKSKHFGFIQFEDPEVAEIAAG
Sbjct: 60 TVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAG 119
Query: 430 AMNDYLLLEHMLQVRVIPPEDVKPNLWKGFKCQYKPVDWVQIERKQHNKERTLEEHRKML 609
AMNDYLL+EHML+V VI PE+VKPNLW+GFKC +KPVD VQIER+Q NKERTLEEHRKML
Sbjct: 120 AMNDYLLMEHMLKVHVIEPENVKPNLWRGFKCNFKPVDSVQIERRQLNKERTLEEHRKML 179
Query: 610 NKVVKRDQKRRKRIEAAGIEYQCPELVGNTQPLPKKIKFSEED* 741
K+VK+DQKRRKRIEAAGIEY+CPELVGNTQP+PK+IKFSEED*
Sbjct: 180 QKIVKKDQKRRKRIEAAGIEYECPELVGNTQPVPKRIKFSEED* 223
>TAIR9_protein||AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE
Length = 353
Score = 53 bits (126), Expect = 2e-007
Identities = 26/75 (34%), Positives = 43/75 (57%)
Frame = +1
Query: 247 STVLYIGRLPHGFYETEIEAFFTQFGTVNRVRVARNKKTGKSKHFGFIQFEDPEVAEIAA 426
S +Y+G +P E ++ A F+Q+G + V + R+K TGKSK F F+ +ED +A
Sbjct: 35 SAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAV 94
Query: 427 GAMNDYLLLEHMLQV 471
+N L+L ++V
Sbjct: 95 DNLNGALVLGRTIKV 109
>TAIR9_protein||AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE
Length = 805
Score = 53 bits (126), Expect = 2e-007
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Frame = +1
Query: 232 SIENKSTVLYIGRLPHGFYETEIEAFFTQFGTVNRVRVARNKKTGKSKHFGFIQFEDPEV 411
S E T LYIG LP + + F+ FG + +V +++ TG SK +GF+++ D ++
Sbjct: 474 SKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQM 533
Query: 412 AEIAAGAMNDYLLLEHMLQVRVI---PPEDVKP 501
A A AMN Y L VR+ PP P
Sbjct: 534 ANTAVQAMNGYRFEGRTLAVRIAGKSPPPIAPP 566
>TAIR9_protein||AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE
Length = 805
Score = 53 bits (126), Expect = 2e-007
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Frame = +1
Query: 232 SIENKSTVLYIGRLPHGFYETEIEAFFTQFGTVNRVRVARNKKTGKSKHFGFIQFEDPEV 411
S E T LYIG LP + + F+ FG + +V +++ TG SK +GF+++ D ++
Sbjct: 474 SKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQM 533
Query: 412 AEIAAGAMNDYLLLEHMLQVRVI---PPEDVKP 501
A A AMN Y L VR+ PP P
Sbjct: 534 ANTAVQAMNGYRFEGRTLAVRIAGKSPPPIAPP 566
>TAIR9_protein||AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE
Length = 805
Score = 53 bits (126), Expect = 2e-007
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Frame = +1
Query: 232 SIENKSTVLYIGRLPHGFYETEIEAFFTQFGTVNRVRVARNKKTGKSKHFGFIQFEDPEV 411
S E T LYIG LP + + F+ FG + +V +++ TG SK +GF+++ D ++
Sbjct: 474 SKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQM 533
Query: 412 AEIAAGAMNDYLLLEHMLQVRVI---PPEDVKP 501
A A AMN Y L VR+ PP P
Sbjct: 534 ANTAVQAMNGYRFEGRTLAVRIAGKSPPPIAPP 566
>TAIR9_protein||AT5G47320.1 | Symbols: RPS19 | RPS19 (RIBOSOMAL PROTEIN S19);
RNA binding | chr5:19203801-19204951 FORWARD
Length = 213
Score = 52 bits (122), Expect = 6e-007
Identities = 31/82 (37%), Positives = 41/82 (50%)
Frame = +1
Query: 232 SIENKSTVLYIGRLPHGFYETEIEAFFTQFGTVNRVRVARNKKTGKSKHFGFIQFEDPEV 411
S+ ST LYIG L G E ++ F+ F V RV NK TG+S+ +GF+ F +
Sbjct: 25 SLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDS 84
Query: 412 AEIAAGAMNDYLLLEHMLQVRV 477
A A AMN L + V V
Sbjct: 85 ANSAISAMNGQELNGFNISVNV 106
>TAIR9_protein||AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33 | SR33; RNA binding
/ protein binding | chr1:20630676-20632695 FORWARD
Length = 288
Score = 49 bits (115), Expect = 4e-006
Identities = 30/84 (35%), Positives = 40/84 (47%)
Frame = +1
Query: 250 TVLYIGRLPHGFYETEIEAFFTQFGTVNRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAG 429
T L + L H + ++ F QFG V + + R+ TG + FGF+QF DP A A
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKH 95
Query: 430 AMNDYLLLEHMLQVRVIPPEDVKP 501
M+ YLLL L V KP
Sbjct: 96 HMDGYLLLGRELTVVFAEENRKKP 119
>TAIR9_protein||AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33 | SR33; RNA binding
/ protein binding | chr1:20630676-20632567 FORWARD
Length = 221
Score = 49 bits (115), Expect = 4e-006
Identities = 30/84 (35%), Positives = 40/84 (47%)
Frame = +1
Query: 250 TVLYIGRLPHGFYETEIEAFFTQFGTVNRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAG 429
T L + L H + ++ F QFG V + + R+ TG + FGF+QF DP A A
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKH 95
Query: 430 AMNDYLLLEHMLQVRVIPPEDVKP 501
M+ YLLL L V KP
Sbjct: 96 HMDGYLLLGRELTVVFAEENRKKP 119
>TAIR9_protein||AT3G13570.1 | Symbols: SCL30A | SCL30a; RNA binding / nucleic
acid binding / nucleotide binding | chr3:4429564-4431602 REVERSE
Length = 263
Score = 49 bits (115), Expect = 4e-006
Identities = 31/84 (36%), Positives = 40/84 (47%)
Frame = +1
Query: 250 TVLYIGRLPHGFYETEIEAFFTQFGTVNRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAG 429
T L + L H + ++ F QFG V + + R+ TG + FGFIQF DP A A
Sbjct: 37 TSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKH 96
Query: 430 AMNDYLLLEHMLQVRVIPPEDVKP 501
M+ YLLL L V KP
Sbjct: 97 QMDGYLLLGRELTVVFAEENRKKP 120
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,362,640,836
Number of Sequences: 33410
Number of Extensions: 12362640836
Number of Successful Extensions: 397243349
Number of sequences better than 0.0: 0
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