BLASTX 7.6.2
Query= UN24089 /QuerySize=1047
(1046 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G03495.1 | Symbols: | nucleotide binding | ch... 89 4e-018
TAIR9_protein||AT5G03480.1 | Symbols: | nucleic acid binding / ... 79 4e-015
TAIR9_protein||AT3G09160.1 | Symbols: | RNA recognition motif (... 74 1e-013
TAIR9_protein||AT5G53700.1 | Symbols: | INVOLVED IN: biological... 73 3e-013
TAIR9_protein||AT5G05430.1 | Symbols: | FUNCTIONS IN: molecular... 50 3e-006
>TAIR9_protein||AT5G03495.1 | Symbols: | nucleotide binding |
chr5:873804-875025 REVERSE
Length = 227
Score = 89 bits (219), Expect = 4e-018
Identities = 60/155 (38%), Positives = 85/155 (54%), Gaps = 9/155 (5%)
Frame = +2
Query: 29 QSAMKG---LELND-GSDAEIRKSSIRRISVEGYDTSLRIEDVDEALRKHFASCGKIIHV 196
+SA+KG L+LN+ G+++ + +ISVEGYDT LR V L KHFASCGKI H+
Sbjct: 3 ESAIKGMKLLQLNEIGANSRKPRIPWTKISVEGYDTRLREYTVKLVLEKHFASCGKITHI 62
Query: 197 YIPGNKEWTILCKYAFVYF-NEEDEEKALRLDGRDMGGQILQIKSYPFHETYLNDVVDPM 373
Y+P + E IL AF+ E EEKAL L G D GG +K + +++DP
Sbjct: 63 YVPRDFERGILKSVAFMCIKGEGGEEKALLLSGTDAGGWTAIVKP----ALWQKEIMDPW 118
Query: 374 KDDNFIMYQFKVEVAGYDNSLPLDVVEKEIKEYFS 478
+ +V V GYD +P ++ + E+FS
Sbjct: 119 LPGMPKLETHRVRVTGYDTCVPKIDIQMALCEHFS 153
>TAIR9_protein||AT5G03480.1 | Symbols: | nucleic acid binding / nucleotide
binding | chr5:869208-870855 REVERSE
Length = 322
Score = 79 bits (193), Expect = 4e-015
Identities = 45/103 (43%), Positives = 64/103 (62%), Gaps = 5/103 (4%)
Frame = +2
Query: 38 MKGLELNDGSDAEIRKSSIRRISVEGYDTSLRIEDVDEALRKHFASCGKIIHVYIPGNKE 217
+K LELND ++S+ I VEGYDTSL+ + AL KHFASCG+I +Y+P + +
Sbjct: 9 LKSLELNDSD----KQSTSTAICVEGYDTSLKEYPLRLALTKHFASCGEITQIYVPRDFK 64
Query: 218 WTILCKYAFVYFNEED-EEKALRLDGRDMGGQILQIKSYPFHE 343
IL +F++ E E+KAL+L G D+GG + +K P HE
Sbjct: 65 KKILKSVSFMWIKGEGAEDKALQLSGTDVGGWTVIVKPKPKHE 107
Score = 72 bits (175), Expect = 5e-013
Identities = 51/132 (38%), Positives = 70/132 (53%), Gaps = 4/132 (3%)
Frame = +2
Query: 86 SSIRRISVEGYDTSLRIEDVDEALRKHFASCGKIIHVYIPGNKEWTILCKYAFVYFNEED 265
S I ISVEGYDTSL+ ++ L KHF SCG+I HVY+P + E +L AF+ E
Sbjct: 110 SPITTISVEGYDTSLQKYLLELILEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEGEG 169
Query: 266 -EEKALRLDGRDMGGQILQIKSYPFHETYLNDVVDPMKDDNFIMYQFKVEVAGYDNSLPL 442
E+KAL+L G D+ G + +K P Y N P + V GYD SLP
Sbjct: 170 AEDKALQLSGTDVVGWTVIVK--PSEIFYDNSSRAPATTPEASKIH-RFRVTGYDASLPE 226
Query: 443 DVVEKEIKEYFS 478
++ + ++FS
Sbjct: 227 IDIQMALCKHFS 238
>TAIR9_protein||AT3G09160.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:2805779-2806912 REVERSE
Length = 199
Score = 74 bits (180), Expect = 1e-013
Identities = 45/102 (44%), Positives = 62/102 (60%), Gaps = 4/102 (3%)
Frame = +2
Query: 35 AMKGLELNDGSDAEIRKSSIRRISVEGYDTSLRIEDVDEALRKHFASCGKIIHVYIPGNK 214
A KGLE+ +IR S I RISV GYD L E V+ L+K F+ CG+I V+IP +
Sbjct: 5 ANKGLEVK--RSRKIRDSDIERISVTGYDIELPREHVESELKKLFSPCGEITDVHIPETR 62
Query: 215 EWTILCKYAFVYF-NEEDEEKALRLDGRDMGGQILQIKSYPF 337
+ L +AF+YF E +KAL+L+G DMGG + ++ PF
Sbjct: 63 N-SSLWSHAFIYFVGEGTADKALQLNGSDMGGWTVDAEADPF 103
>TAIR9_protein||AT5G53700.1 | Symbols: | INVOLVED IN: biological_process
unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: nucleic acid binding / nucleotide binding
(TAIR:AT5G03480.1); Has 74 Blast hits to 54 proteins in 11 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses
- 0; Other Eukaryotes - 6 (source: NCBI BLink). |
chr5:21801221-21802546 FORWARD
Length = 252
Score = 73 bits (177), Expect = 3e-013
Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 15/148 (10%)
Frame = +2
Query: 35 AMKGLELNDGSDAEIRKSSIRRISVEGYDTSLRIEDVDEALRKHFASCGKIIHVYIPGNK 214
A++GLE D ++ + +ISVEGYDTS+ + AL KHFASCGKI+ + +P +
Sbjct: 5 AVRGLESKDTNN----RKCFSKISVEGYDTSVHEFPLKLALAKHFASCGKIVDIDVPRDF 60
Query: 215 EWTILCKYAFVYFNEEDEE----KALRLDGRDMGGQILQIKSYPFHETYLN-DVVDPMKD 379
+ IL F+ F+ ++ E KAL L G D+GG + +KS P + Y + VD K
Sbjct: 61 KKRILKSPLFIIFHAKEGESPVDKALELSGTDVGGWNVVVKSLPGQQMYRDPGGVDRFKG 120
Query: 380 DNFIMYQFKVEVAGYDNSLPLDVVEKEI 463
+ ++ V YD L ++ +I
Sbjct: 121 ERTLI------VKVYDTPSTLSKIDLQI 142
>TAIR9_protein||AT5G05430.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: stem, leaf; EXPRESSED DURING:
LP.04 four leaves visible; BEST Arabidopsis thaliana protein match is:
RNA recognition motif (RRM)-containing protein (TAIR:AT3G09160.1); Has
23 Blast hits to 21 proteins in 1 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr5:1605275-1606703 REVERSE
Length = 159
Score = 50 bits (117), Expect = 3e-006
Identities = 35/112 (31%), Positives = 63/112 (56%), Gaps = 8/112 (7%)
Frame = +2
Query: 35 AMKGLELNDGSDAEIRKSSIRRISVEGYDTSLRIEDVDEALRKHFASCGKIIHVYIP--G 208
A K E+N G + + + RI V GYDT L ++D+ AL +HF+SCG+I +YIP
Sbjct: 5 ADKPTEINVGQ--LVSGNDVGRIKVTGYDTGLPLDDLYTALAEHFSSCGEIWEIYIPLKF 62
Query: 209 NKEWTILCKYAFVYFNEEDEEKALRLDGRDMGGQILQIKSYPFHETYLNDVV 364
++ TIL ++ ++ + ++ ++GG + +++YP+ + ND V
Sbjct: 63 DETNTILNRFWWLLPPPFLSNSSAQV---NVGGWNVSVEAYPY-PAHANDSV 110
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,404,495,420
Number of Sequences: 33410
Number of Extensions: 12404495420
Number of Successful Extensions: 397258400
Number of sequences better than 0.0: 0
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