BLASTX 7.6.2
Query= UN24177 /QuerySize=1063
(1062 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|297810421|ref|XP_002873094.1| predicted protein [Arabidopsis ... 121 3e-025
gi|297831128|ref|XP_002883446.1| predicted protein [Arabidopsis ... 118 2e-024
gi|297851804|ref|XP_002893783.1| predicted protein [Arabidopsis ... 116 1e-023
gi|297806309|ref|XP_002871038.1| predicted protein [Arabidopsis ... 111 3e-022
gi|15242768|ref|NP_195968.1| RNA-binding (RRM/RBD/RNP motifs) fa... 100 5e-019
gi|297819148|ref|XP_002877457.1| predicted protein [Arabidopsis ... 82 2e-013
gi|297806867|ref|XP_002871317.1| predicted protein [Arabidopsis ... 79 1e-012
gi|297810419|ref|XP_002873093.1| predicted protein [Arabidopsis ... 76 1e-011
gi|145334285|ref|NP_001078524.1| RNA-binding (RRM/RBD/RNP motifs... 71 2e-010
gi|7378635|emb|CAB83311.1| putative protein [Arabidopsis thaliana] 66 8e-009
gi|297818940|ref|XP_002877353.1| predicted protein [Arabidopsis ... 62 1e-007
gi|297788311|ref|XP_002862284.1| predicted protein [Arabidopsis ... 60 4e-007
gi|15233825|ref|NP_194173.1| RNA recognition motif-containing pr... 59 1e-006
gi|297828670|ref|XP_002882217.1| predicted protein [Arabidopsis ... 58 3e-006
>gi|297810421|ref|XP_002873094.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 121 bits (302), Expect = 3e-025
Identities = 80/216 (37%), Positives = 114/216 (52%), Gaps = 4/216 (1%)
Frame = +2
Query: 176 ISVEGYDPCLPEDDLKNELINHFKSCGEVFNVILREDPDSPNLDRRALVILLGEGAEEKA 355
ISVEGYD L + LK L HF SCGE+ N+ + D + L A + + GEGAEEKA
Sbjct: 34 ISVEGYDTWLRKYPLKLVLEKHFASCGEITNIYVPTDFERGILKSVAFMRIEGEGAEEKA 93
Query: 356 LQLNGTDIGGWKALVKVEPEEERDEEADLYRSSLADEIYNDRRFWFGVAVRGYDTSLPAD 535
LQL+GTD+GGW A+VK P ++ + Y D + + V GYDTSLP
Sbjct: 94 LQLSGTDVGGWTAIVKPAPSQKVFMDDPWYAGPRCAAAPADTKTHM-IRVTGYDTSLPKI 152
Query: 536 EVESALTKHFSSCGEITHVFVSTLDKKTNIYFHEKEGEARALDLCGTEVGGSKIAV--CL 709
+++ AL KHFSSCG I V V + IY + +AL+L G +GGS + V +
Sbjct: 153 DMQIALYKHFSSCGSIWKVIVLS-SGAAFIYLEGERCVDKALELSGRNMGGSTLVVEPVV 211
Query: 710 LATIFTNRPPPGGGICYGYSVPAHMIEFTREIHDKV 817
+ P GY++P+ ++E ++ K+
Sbjct: 212 PRPDILKKRRPLACTTTGYTLPSTLLEVAKKKKKKM 247
>gi|297831128|ref|XP_002883446.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 319
Score = 118 bits (295), Expect = 2e-024
Identities = 76/179 (42%), Positives = 100/179 (55%), Gaps = 8/179 (4%)
Frame = +2
Query: 176 ISVEGYDPCLPEDDLKNELINHFKSCGEVFNVILREDPDSPNLDRRALVILLGEGAEEKA 355
+SVEGYD L + LK L HF SCGE+ N+ + D + L A + + GEGAEEKA
Sbjct: 47 VSVEGYDTWLRKYPLKLVLEKHFASCGEITNIYVPTDFERGILKSVAFMRIEGEGAEEKA 106
Query: 356 LQLNGTDIGGWKALVKVEPEEERDEEADLYRSSLADEIYNDRRFWFGVAVRGYDTSLPAD 535
LQL+GTDIGGW A+VK P ++ + Y D + + + GYDTSLP
Sbjct: 107 LQLSGTDIGGWTAIVKPAPWQKVFMDDPRYAGPRCAAAPADTKTHM-IRITGYDTSLPKI 165
Query: 536 EVESALTKHFSSCGEITHVFVSTLDKKTNIYFHEKEGEA---RALDLCGTEVGGSKIAV 703
+++ AL KHFSSCG I V V K+ F EGE +AL+L G +GGS + V
Sbjct: 166 DMQIALYKHFSSCGSIWKVIV----LKSGAAFIYLEGERCVDKALELSGRNMGGSTLVV 220
>gi|297851804|ref|XP_002893783.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 276
Score = 116 bits (288), Expect = 1e-023
Identities = 80/208 (38%), Positives = 107/208 (51%), Gaps = 19/208 (9%)
Frame = +2
Query: 158 CKPRAMISVEGYDPCLPEDDLKNELINHFKSCGEVFNVILREDPDSPNLDRRALVILLGE 337
C + I VEGYD L E DLK L HF SCGE+ ++ + D + L A + + GE
Sbjct: 55 CTSFSRICVEGYDTSLHEYDLKLALRKHFSSCGEITHIYVPRDFERNILKSFAFIHIAGE 114
Query: 338 GAEEKALQLNGTDIGGWKALVKVEPEEERDEEADLYRSSLADEIYN--DRRFWFGVAVRG 511
GAEEKAL L+G+D GGW K P + + D R++ ++ R+ + V G
Sbjct: 115 GAEEKALALSGSDAGGWNVFAKSSPYD--GQYVDPGRATAESPRFSLPQRK----MIVTG 168
Query: 512 YDTSLPADEVESALTKHFSSCGEITHVFV-----STLDKKTNIYFHEKEGEARALDLCGT 676
YDTSLP +++ L+ HFSSCGEIT+V + LD I +AL+L G
Sbjct: 169 YDTSLPEIDIQIRLSNHFSSCGEITNVMIPKDANGGLDSTALISILGAGSVEKALELGGC 228
Query: 677 EVGGSKIAVCLLATIFTNRPPPGGGICY 760
+VGG IAV T PP G I Y
Sbjct: 229 DVGGWNIAV------VTVLPPLGTTIRY 250
>gi|297806309|ref|XP_002871038.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 248
Score = 111 bits (275), Expect = 3e-022
Identities = 71/179 (39%), Positives = 99/179 (55%), Gaps = 8/179 (4%)
Frame = +2
Query: 176 ISVEGYDPCLPEDDLKNELINHFKSCGEVFNVILREDPDSPNLDRRALVILLGEGAEEKA 355
+SVEGYD L + LK L HF SCGE+ N+ + D + L A + + GEGAEEKA
Sbjct: 47 VSVEGYDTWLRKYPLKLVLEKHFASCGEITNIYVPTDFERGILKSVAFMRIEGEGAEEKA 106
Query: 356 LQLNGTDIGGWKALVKVEPEEERDEEADLYRSSLADEIYNDRRFWFGVAVRGYDTSLPAD 535
LQL+GTD+GGW A+VK P ++ + Y D + + V GYDTSLP
Sbjct: 107 LQLSGTDVGGWTAIVKPAPSQKVFMDDPWYAGPRCAAAPADTK-THRIRVTGYDTSLPEI 165
Query: 536 EVESALTKHFSSCGEITHVFVSTLDKKTNIYFHEKEGEA---RALDLCGTEVGGSKIAV 703
+++ AL KHFSSCG ++ V V + + F +GE +AL+L +GG + V
Sbjct: 166 DMQIALCKHFSSCGYVSKVIVLS----SGAAFLCLKGERCVDKALELSRCNMGGRTLVV 220
>gi|15242768|ref|NP_195968.1| RNA-binding (RRM/RBD/RNP motifs) family protein
[Arabidopsis thaliana]
Length = 321
Score = 100 bits (248), Expect = 5e-019
Identities = 68/180 (37%), Positives = 93/180 (51%), Gaps = 9/180 (5%)
Frame = +2
Query: 164 PRAMISVEGYDPCLPEDDLKNELINHFKSCGEVFNVILREDPDSPNLDRRALVILLGEGA 343
P ISVEGYD L + L+ L HF SCGE+ +V + D + L A + + GEGA
Sbjct: 111 PITTISVEGYDTSLQKYLLELILEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEGEGA 170
Query: 344 EEKALQLNGTDIGGWKALVKVEPEEERDEEADLYRSSLADEIYNDRRFWFGVAVRGYDTS 523
E+KALQL+GTD+ GW +VK + + A +I+ R V GYD S
Sbjct: 171 EDKALQLSGTDVVGWTVIVKPSEIFYDNSSRAPATTPEASKIHRFR-------VTGYDAS 223
Query: 524 LPADEVESALTKHFSSCGEITHVFVSTLDKKTNIYFHEKEGEARALDLCGTEVGGSKIAV 703
LP +++ AL KHFSSCGEI V V L + + +AL+L G +G + V
Sbjct: 224 LPEIDIQMALCKHFSSCGEIWQVTV--LSSTAFVSLRGERCVDKALELSGCNMGERTLVV 281
Score = 77 bits (188), Expect = 4e-012
Identities = 38/82 (46%), Positives = 51/82 (62%)
Frame = +2
Query: 176 ISVEGYDPCLPEDDLKNELINHFKSCGEVFNVILREDPDSPNLDRRALVILLGEGAEEKA 355
I VEGYD L E L+ L HF SCGE+ + + D L + + + GEGAE+KA
Sbjct: 26 ICVEGYDTSLKEYPLRLALTKHFASCGEITQIYVPRDFKKKILKSVSFMWIKGEGAEDKA 85
Query: 356 LQLNGTDIGGWKALVKVEPEEE 421
LQL+GTD+GGW +VK +P+ E
Sbjct: 86 LQLSGTDVGGWTVIVKPKPKHE 107
>gi|297819148|ref|XP_002877457.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 184
Score = 82 bits (200), Expect = 2e-013
Identities = 56/152 (36%), Positives = 78/152 (51%), Gaps = 13/152 (8%)
Frame = +2
Query: 257 EVFNVILREDPDSPNLDRRALVILLGEGAEEKALQLNGTDIGGWKALVKVEPEEERDEEA 436
E + L D +S L R A + + GE A EKAL+L+GTD+GGW A+VK P ++ +
Sbjct: 27 EGYATSLHADYESGTLKRVAFMRIEGENANEKALELSGTDVGGWTAIVKAAPWQKEVMDP 86
Query: 437 DLYRSSLADEIYNDRRFWFGVAVRGYDTSLPADEVESALTKHFSSCGEITHVFVSTLDKK 616
S+ A R V V GYDTSLP ++E A+ + SSCGE+ + V +
Sbjct: 87 WCPASAAA-----ARPKEHSVNVTGYDTSLPEIDIEMAVCEFLSSCGEVARIMVLPSHAR 141
Query: 617 TNIYFHEKEGEA---RALDLCGTEVGGSKIAV 703
+I GE +AL L G VGG + V
Sbjct: 142 VSII-----GEGCVDKALQLSGCNVGGITLEV 168
>gi|297806867|ref|XP_002871317.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 313
Score = 79 bits (193), Expect = 1e-012
Identities = 42/89 (47%), Positives = 57/89 (64%), Gaps = 11/89 (12%)
Frame = +2
Query: 176 ISVEGYDPCLPEDDLKNELINHFKSCGEVFNVILREDPDSPNLDRRALVILLGEGAEEKA 355
ISV GYD LPEDDLK L HF+SCGEV ++ +R A + ++GEGA +KA
Sbjct: 227 ISVTGYDTLLPEDDLKTALSKHFRSCGEVTDISIRRS--------SAFIYIMGEGAGDKA 278
Query: 356 LQLNGTDI-GGWKALVKVE--PEEERDEE 433
+L+G+D+ GGWK + KV+ P E DE+
Sbjct: 279 TELSGSDMGGGWKVVAKVDSVPGEYHDED 307
Score = 59 bits (140), Expect = 2e-006
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Frame = +2
Query: 491 FGVAVRGYDTSLPADEVESALTKHFSSCGEITHVFVSTLDKKTNIYFHEKEGEARALDLC 670
FG++V GYDT LP D++++AL+KHF SCGE+T +S IY + +A +L
Sbjct: 225 FGISVTGYDTLLPEDDLKTALSKHFRSCGEVTD--ISIRRSSAFIYIMGEGAGDKATELS 282
Query: 671 GTEVGG 688
G+++GG
Sbjct: 283 GSDMGG 288
>gi|297810419|ref|XP_002873093.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 161
Score = 76 bits (185), Expect = 1e-011
Identities = 38/82 (46%), Positives = 52/82 (63%)
Frame = +2
Query: 176 ISVEGYDPCLPEDDLKNELINHFKSCGEVFNVILREDPDSPNLDRRALVILLGEGAEEKA 355
ISVEGY+ L E L+ L HF SCG++ + + D L R + V + G+ AEEKA
Sbjct: 31 ISVEGYNTTLKEYPLRLALAKHFASCGKITQIYVPRDFKKKLLKRASFVWIEGDDAEEKA 90
Query: 356 LQLNGTDIGGWKALVKVEPEEE 421
LQL+GTD+GGW A+VK P ++
Sbjct: 91 LQLSGTDVGGWTAIVKPVPSQK 112
>gi|145334285|ref|NP_001078524.1| RNA-binding (RRM/RBD/RNP motifs) family
protein [Arabidopsis thaliana]
Length = 226
Score = 71 bits (173), Expect = 2e-010
Identities = 38/80 (47%), Positives = 49/80 (61%)
Frame = +2
Query: 164 PRAMISVEGYDPCLPEDDLKNELINHFKSCGEVFNVILREDPDSPNLDRRALVILLGEGA 343
P ISVEGYD L E +K L HF SCG++ ++ + D + L A + + GEG
Sbjct: 27 PWTKISVEGYDTRLREYTVKLVLEKHFASCGKITHIYVPRDFERGILKSVAFMCIKGEGG 86
Query: 344 EEKALQLNGTDIGGWKALVK 403
EEKAL L+GTD GGW A+VK
Sbjct: 87 EEKALLLSGTDAGGWTAIVK 106
>gi|7378635|emb|CAB83311.1| putative protein [Arabidopsis thaliana]
Length = 248
Score = 66 bits (160), Expect = 8e-009
Identities = 37/89 (41%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Frame = +2
Query: 137 ASLEKYRCKPRAMISVEGYDPCLPEDDLKNELINHFKSCGEVFNVILREDPDSPNLDRRA 316
A++E+ CK + GYD L E +K L HF SCG++ ++ + D + L A
Sbjct: 4 AAIERDWCK---LSKAPGYDTRLREYTVKLVLEKHFASCGKITHIYVPRDFERGILKSVA 60
Query: 317 LVILLGEGAEEKALQLNGTDIGGWKALVK 403
+ + GEG EEKAL L+GTD GGW A+VK
Sbjct: 61 FMCIKGEGGEEKALLLSGTDAGGWTAIVK 89
>gi|297818940|ref|XP_002877353.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 122
Score = 62 bits (149), Expect = 1e-007
Identities = 29/64 (45%), Positives = 43/64 (67%)
Frame = +2
Query: 212 DDLKNELINHFKSCGEVFNVILREDPDSPNLDRRALVILLGEGAEEKALQLNGTDIGGWK 391
D + L HF SCG++ ++ + D +S L R A + + GEGAE+KAL+L+GTD+GGW
Sbjct: 7 DTSLHALRKHFSSCGKIKHIYVPRDFESGTLKRVAFMRIEGEGAEDKALELSGTDVGGWT 66
Query: 392 ALVK 403
A+ K
Sbjct: 67 AIEK 70
>gi|297788311|ref|XP_002862284.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 237
Score = 60 bits (145), Expect = 4e-007
Identities = 38/90 (42%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Frame = +2
Query: 491 FGVAVRGYDTSLPADEVESALTKHFSSCGEITHVFVSTLDKKTNIYFHE------KEGEA 652
F + V GYDTSLP +V+ L+KHFSSCGE+T+V + T D F K
Sbjct: 145 FRIGVTGYDTSLPKIDVQIGLSKHFSSCGEVTNVSIPTDDSGGLYRFASITILGGKGAVD 204
Query: 653 RALDLCGTEVGGSKIAVCLLATIFTNRPPP 742
+AL L G VGG KI V ++ PPP
Sbjct: 205 KALKLSGRNVGGWKITVDMVL------PPP 228
>gi|15233825|ref|NP_194173.1| RNA recognition motif-containing protein
[Arabidopsis thaliana]
Length = 87
Score = 59 bits (141), Expect = 1e-006
Identities = 26/65 (40%), Positives = 41/65 (63%)
Frame = +2
Query: 218 LKNELINHFKSCGEVFNVILREDPDSPNLDRRALVILLGEGAEEKALQLNGTDIGGWKAL 397
+K L NHFKSCG + V R P++ ++ A + ++G A+EK + LNG+++GG K +
Sbjct: 1 MKEALTNHFKSCGVIAMVSFRRHPETDVVNGLATITMMGNDADEKVMLLNGSELGGRKLV 60
Query: 398 VKVEP 412
VK P
Sbjct: 61 VKANP 65
>gi|297828670|ref|XP_002882217.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 195
Score = 58 bits (138), Expect = 3e-006
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +2
Query: 164 PRAMISVEGYDPCLPEDDLKNELINHFKSCGEVFNVILREDPDSPNLDRRALVILLGEGA 343
P+ I VEGYD + E DL+ L HF SCGE+ ++ + + + L A V EGA
Sbjct: 15 PKDRIRVEGYDTSIYEYDLELALTKHFSSCGEISHIYIPRNFEKGILKSFAFVDFATEGA 74
Query: 344 EEKALQLNGTDI-GGWKALVKVEP 412
EKAL L+ + + GGW+ + P
Sbjct: 75 VEKALNLSRSAVEGGWRVFAEESP 98
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,873,197,794,269
Number of Sequences: 15229318
Number of Extensions: 2873197794269
Number of Successful Extensions: 688350487
Number of sequences better than 0.0: 0
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