BLASTX 7.6.2
Query= UN24930 /QuerySize=868
(867 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|297812083|ref|XP_002873925.1| predicted protein [Arabidopsis ... 206 3e-051
gi|42567949|ref|NP_197404.2| RNA recognition motif-containing pr... 206 6e-051
gi|42573423|ref|NP_974808.1| RNA recognition motif-containing pr... 134 3e-029
gi|297736978|emb|CBI26179.3| unnamed protein product [Vitis vini... 106 8e-021
gi|225432522|ref|XP_002280240.1| PREDICTED: hypothetical protein... 81 2e-013
gi|224104887|ref|XP_002313606.1| predicted protein [Populus tric... 78 2e-012
gi|296084877|emb|CBI28286.3| unnamed protein product [Vitis vini... 74 3e-011
gi|255585455|ref|XP_002533421.1| RNA binding protein, putative [... 74 3e-011
gi|328850756|gb|EGF99917.1| hypothetical protein MELLADRAFT_1181... 74 3e-011
gi|297275647|ref|XP_002801048.1| PREDICTED: meiotically up-regul... 73 4e-011
gi|255631468|gb|ACU16101.1| unknown [Glycine max] 70 4e-010
gi|159163576|pdb|1X5S|A Chain A, Solution Structure Of Rrm Domai... 70 5e-010
gi|73987338|ref|XP_868602.1| PREDICTED: similar to cold inducibl... 69 8e-010
gi|119589931|gb|EAW69525.1| cold inducible RNA binding protein, ... 69 8e-010
gi|119589927|gb|EAW69521.1| cold inducible RNA binding protein, ... 69 8e-010
gi|116779573|gb|ABK21345.1| unknown [Picea sitchensis] 68 1e-009
gi|72393389|ref|XP_847495.1| RNA-binding protein [Trypanosoma br... 68 2e-009
gi|225464121|ref|XP_002264164.1| PREDICTED: hypothetical protein... 68 2e-009
gi|261330753|emb|CBH13738.1| RNA-binding protein, putative [Tryp... 68 2e-009
gi|296087958|emb|CBI35241.3| unnamed protein product [Vitis vini... 68 2e-009
>gi|297812083|ref|XP_002873925.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 167
Score = 206 bits (524), Expect = 3e-051
Identities = 117/170 (68%), Positives = 130/170 (76%), Gaps = 14/170 (8%)
Frame = +3
Query: 42 TLQSPFHKLQFVGVSRNRRELTIPTTAKTPTRCSLVSLCHHTA--KRSNP--RTISCVAG 209
T Q P K QF S+N R L +PTT + P R S HTA K +P RTISCVAG
Sbjct: 7 TFQIPLFKHQFFETSQNLRTLNLPTT-EIPRRSSF-----HTARSKSCSPPLRTISCVAG 60
Query: 210 DFPDDGAREASSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSL 389
DDG REA SS T SS+FVKG +DSVSEGRLKKVFSEFG+V++VKII+NERTRQSL
Sbjct: 61 ---DDGTREA-SSLPTPISSVFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIINERTRQSL 116
Query: 390 GYGYVWFTKRDDAQLAVEAMNGKFFDGRFILVKFGQPGLSRRRRSHSDFL 539
GYGYVWF +++DAQLAVEAMNGKFFDGRFILVKFGQPGLSRRRR HS FL
Sbjct: 117 GYGYVWFNRKEDAQLAVEAMNGKFFDGRFILVKFGQPGLSRRRRPHSGFL 166
>gi|42567949|ref|NP_197404.2| RNA recognition motif-containing protein
[Arabidopsis thaliana]
Length = 172
Score = 206 bits (522), Expect = 6e-051
Identities = 119/173 (68%), Positives = 132/173 (76%), Gaps = 10/173 (5%)
Frame = +3
Query: 42 TLQSPFHKLQFVGVSRNRRELTIPTTAKTPTRCSLVSLCHHTAKR---SNPRTISCVAGD 212
T Q PF K ++ G+S+N R T T T R L+S HTA+ S RTISCVAG
Sbjct: 7 TFQIPFLKHRYFGMSQNLR--TPILTMSTIPRDRLIS-SFHTARSKLCSPLRTISCVAG- 62
Query: 213 FPDDGAREASSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLG 392
DD REASS S S SS+FVKG +DSVSEGRLKKVFSEFG+V++VKII NERTRQSLG
Sbjct: 63 --DDETREASSLPS-SISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLG 119
Query: 393 YGYVWFTKRDDAQLAVEAMNGKFFDGRFILVKFGQPGLSRRRRSHSDFLFVNK 551
YGYVWF ++DAQ AVEAMNGKFFDGRFILVKFGQPGLSRRRR HSDFLFVNK
Sbjct: 120 YGYVWFNSKEDAQSAVEAMNGKFFDGRFILVKFGQPGLSRRRRPHSDFLFVNK 172
>gi|42573423|ref|NP_974808.1| RNA recognition motif-containing protein
[Arabidopsis thaliana]
Length = 126
Score = 134 bits (335), Expect = 3e-029
Identities = 79/117 (67%), Positives = 88/117 (75%), Gaps = 8/117 (6%)
Frame = +3
Query: 117 TAKTPTRCSLVSLCHHTAKR---SNPRTISCVAGDFPDDGAREASSSTSTSTSSIFVKGL 287
T T R L+S HTA+ S RTISCVAG DD REASS S S SS+FVKG
Sbjct: 11 TMSTIPRDRLIS-SFHTARSKLCSPLRTISCVAG---DDETREASSLPS-SISSLFVKGF 65
Query: 288 ADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQLAVEAMNGK 458
+DSVSEGRLKKVFSEFG+V++VKII NERTRQSLGYGYVWF ++DAQ AVEAMNGK
Sbjct: 66 SDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGK 122
>gi|297736978|emb|CBI26179.3| unnamed protein product [Vitis vinifera]
Length = 156
Score = 106 bits (262), Expect = 8e-021
Identities = 54/134 (40%), Positives = 83/134 (61%)
Frame = +3
Query: 141 SLVSLCHHTAKRSNPRTISCVAGDFPDDGAREASSSTSTSTSSIFVKGLADSVSEGRLKK 320
+L+++ T ++ +P +IS + R ++ +S++ IF+KGL S EG LKK
Sbjct: 23 TLITVSTTTNRKIHPVSISSASPGLRYPCLRCCATDDESSSTRIFIKGLPQSTCEGSLKK 82
Query: 321 VFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQLAVEAMNGKFFDGRFILVKFGQP 500
FS+FGEVS V+I N+ + Q LG+ + WFT + AQLAV+ M+GKFF GRF+ VK +P
Sbjct: 83 AFSQFGEVSKVRIKRNKISSQPLGFAFAWFTTEESAQLAVKMMDGKFFHGRFVFVKIAKP 142
Query: 501 GLSRRRRSHSDFLF 542
G S+R + + F
Sbjct: 143 GPSKRHVKAAPYKF 156
>gi|225432522|ref|XP_002280240.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 145
Score = 81 bits (198), Expect = 2e-013
Identities = 42/106 (39%), Positives = 66/106 (62%)
Frame = +3
Query: 141 SLVSLCHHTAKRSNPRTISCVAGDFPDDGAREASSSTSTSTSSIFVKGLADSVSEGRLKK 320
+L+++ T ++ +P +IS + R ++ +S++ IF+KGL S EG LKK
Sbjct: 23 TLITVSTTTNRKIHPVSISSASPGLRYPCLRCCATDDESSSTRIFIKGLPQSTCEGSLKK 82
Query: 321 VFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQLAVEAMNGK 458
FS+FGEVS V+I N+ + Q LG+ + WFT + AQLAV+ M+GK
Sbjct: 83 AFSQFGEVSKVRIKRNKISSQPLGFAFAWFTTEESAQLAVKMMDGK 128
>gi|224104887|ref|XP_002313606.1| predicted protein [Populus trichocarpa]
Length = 109
Score = 78 bits (190), Expect = 2e-012
Identities = 36/77 (46%), Positives = 54/77 (70%)
Frame = +3
Query: 261 TSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQLAV 440
++ +FVKGL+ S +E ++ + FSEFGEV KI++++ ++ GYG+V F K+D A+ A
Sbjct: 33 SAKVFVKGLSFSSTEKKIAEAFSEFGEVIEAKIVMDKARKRPKGYGFVTFAKKDAAEKAC 92
Query: 441 EAMNGKFFDGRFILVKF 491
E MNGK DGR I V+F
Sbjct: 93 EGMNGKLLDGRAIYVRF 109
>gi|296084877|emb|CBI28286.3| unnamed protein product [Vitis vinifera]
Length = 111
Score = 74 bits (180), Expect = 3e-011
Identities = 35/76 (46%), Positives = 53/76 (69%)
Frame = +3
Query: 264 SSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQLAVE 443
S++FVKG++ S +E L + FS+FGEV KII+++R + G+ YV FT+ D+A+ A+
Sbjct: 34 STLFVKGISFSTTEKTLAEAFSQFGEVVEAKIIMDKRKLRPKGFAYVTFTREDEAEKALT 93
Query: 444 AMNGKFFDGRFILVKF 491
MNGK DGR +LV +
Sbjct: 94 EMNGKVVDGRTVLVDY 109
>gi|255585455|ref|XP_002533421.1| RNA binding protein, putative [Ricinus
communis]
Length = 152
Score = 74 bits (179), Expect = 3e-011
Identities = 37/89 (41%), Positives = 56/89 (62%)
Frame = +3
Query: 237 ASSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTK 416
+S+S S I VK L SV E L+K FS FGE++ VK++ ++ ++S + ++ +T
Sbjct: 35 SSTSNFPLASRIIVKNLGYSVGESSLQKEFSNFGEIAEVKLVKDDERKRSKAFVFIQYTC 94
Query: 417 RDDAQLAVEAMNGKFFDGRFILVKFGQPG 503
+DDA LA+E M+ K FDGR I V +PG
Sbjct: 95 QDDAILAMENMDRKIFDGRLIYVDLAKPG 123
>gi|328850756|gb|EGF99917.1| hypothetical protein MELLADRAFT_118186 [Melampsora
larici-populina 98AG31]
Length = 667
Score = 74 bits (179), Expect = 3e-011
Identities = 44/111 (39%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Frame = +3
Query: 207 GDFPDDGAREA-SSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQ 383
GD D A++A + S ++FV GL+ +V + LKK F +FGEV ++I T +
Sbjct: 381 GDTEDGSAKKAKTDDASGDIKNLFVGGLSWNVDDDWLKKEFEKFGEVISARVITERGTER 440
Query: 384 SLGYGYVWFTKRDDAQLAVEAMNGKFFDGRFILVKFGQPGLSRRRRSHSDF 536
S G+GYV F +DA+ AVEAM G DGR I V F P R + F
Sbjct: 441 SKGFGYVDFASPEDARKAVEAMAGTEIDGRTINVDFSAPKPERPPQEKRSF 491
>gi|297275647|ref|XP_002801048.1| PREDICTED: meiotically up-regulated gene 28
protein-like isoform 3 [Macaca mulatta]
Length = 206
Score = 73 bits (178), Expect = 4e-011
Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 8/116 (6%)
Frame = +3
Query: 195 SCVAGDFPDDGAREASSSTSTSTS------SIFVKGLADSVSEGRLKKVFSEFGEVSHVK 356
S V G FP + A+S ST + +FV GL+ +E L++VFS++G++S V
Sbjct: 11 SRVPGPFPSFRKQAAASPASTQAAMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVV 70
Query: 357 IIVNERTRQSLGYGYVWFTKRDDAQLAVEAMNGKFFDGRFILVKFGQPGLSRRRRS 524
++ + T++S G+G+V F DDA+ A+ AMNGK DGR I V Q G S RS
Sbjct: 71 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV--DQAGKSSDNRS 124
>gi|255631468|gb|ACU16101.1| unknown [Glycine max]
Length = 113
Score = 70 bits (170), Expect = 4e-010
Identities = 38/82 (46%), Positives = 48/82 (58%)
Frame = +3
Query: 255 TSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQL 434
T TS +FVKGLA S +E L K FS++G V II+N+ +S G+GYV F K ++A
Sbjct: 30 TMTSKVFVKGLAFSTTEEELAKAFSQYGSVLKANIILNKAKNRSKGFGYVIFAKEEEACK 89
Query: 435 AVEAMNGKFFDGRFILVKFGQP 500
A MNGK GR I V P
Sbjct: 90 AQIDMNGKILHGRVIYVDVQLP 111
>gi|159163576|pdb|1X5S|A Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp
Length = 102
Score = 70 bits (169), Expect = 5e-010
Identities = 39/95 (41%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Frame = +3
Query: 240 SSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKR 419
SS ++ +FV GL+ +E L++VFS++G++S V ++ + T++S G+G+V F
Sbjct: 5 SSGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENI 64
Query: 420 DDAQLAVEAMNGKFFDGRFILVKFGQPGLSRRRRS 524
DDA+ A+ AMNGK DGR I V Q G S RS
Sbjct: 65 DDAKDAMMAMNGKSVDGRQIRV--DQAGKSSDNRS 97
>gi|73987338|ref|XP_868602.1| PREDICTED: similar to cold inducible RNA binding
protein isoform 4 [Canis familiaris]
Length = 219
Score = 69 bits (167), Expect = 8e-010
Identities = 38/99 (38%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Frame = +3
Query: 228 AREASSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVW 407
A ++ ++ +FV GL+ +E L++VFS++G++S V ++ + T++S G+G+V
Sbjct: 41 AHHGKATMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVT 100
Query: 408 FTKRDDAQLAVEAMNGKFFDGRFILVKFGQPGLSRRRRS 524
F DDA+ A+ AMNGK DGR I V Q G S RS
Sbjct: 101 FENIDDAKDAMMAMNGKSVDGRQIRV--DQAGKSSDNRS 137
>gi|119589931|gb|EAW69525.1| cold inducible RNA binding protein, isoform CRA_d
[Homo sapiens]
Length = 311
Score = 69 bits (167), Expect = 8e-010
Identities = 38/97 (39%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Frame = +3
Query: 234 EASSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFT 413
E ++ ++ +FV GL+ +E L++VFS++G++S V ++ + T++S G+G+V F
Sbjct: 8 EEQAAMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFE 67
Query: 414 KRDDAQLAVEAMNGKFFDGRFILVKFGQPGLSRRRRS 524
DDA+ A+ AMNGK DGR I V Q G S RS
Sbjct: 68 NIDDAKDAMMAMNGKSVDGRQIRV--DQAGKSSDNRS 102
>gi|119589927|gb|EAW69521.1| cold inducible RNA binding protein, isoform CRA_b
[Homo sapiens]
Length = 184
Score = 69 bits (167), Expect = 8e-010
Identities = 38/97 (39%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Frame = +3
Query: 234 EASSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFT 413
E ++ ++ +FV GL+ +E L++VFS++G++S V ++ + T++S G+G+V F
Sbjct: 8 EEQAAMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFE 67
Query: 414 KRDDAQLAVEAMNGKFFDGRFILVKFGQPGLSRRRRS 524
DDA+ A+ AMNGK DGR I V Q G S RS
Sbjct: 68 NIDDAKDAMMAMNGKSVDGRQIRV--DQAGKSSDNRS 102
>gi|116779573|gb|ABK21345.1| unknown [Picea sitchensis]
Length = 198
Score = 68 bits (165), Expect = 1e-009
Identities = 33/84 (39%), Positives = 53/84 (63%)
Frame = +3
Query: 249 TSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDA 428
T T + +FV GL+ +E L+ FS +G+V V+II+N+ TR+S G+G+V F+ ++A
Sbjct: 83 TRTRNNKLFVTGLSIYTTERTLQNAFSNYGKVVDVRIIMNKTTRRSKGFGFVEFSTEEEA 142
Query: 429 QLAVEAMNGKFFDGRFILVKFGQP 500
A++ MNGK +G I V +P
Sbjct: 143 NTALKEMNGKILNGWLISVDIAKP 166
>gi|72393389|ref|XP_847495.1| RNA-binding protein [Trypanosoma brucei TREU927]
Length = 666
Score = 68 bits (164), Expect = 2e-009
Identities = 38/115 (33%), Positives = 62/115 (53%)
Frame = +3
Query: 201 VAGDFPDDGAREASSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTR 380
V G ++ R S S++F+ GL SV++ L ++FS FG + K++++ T
Sbjct: 251 VQGTKDNNHQRVPDCSEDAIRSNLFISGLRHSVTDSGLHELFSPFGSIESAKVMLDIHTG 310
Query: 381 QSLGYGYVWFTKRDDAQLAVEAMNGKFFDGRFILVKFGQPGLSRRRRSHSDFLFV 545
+S G +V F + DAQ AVEA+NG F G I V+ +P + R + ++ FV
Sbjct: 311 RSRGIAFVKFVRLCDAQRAVEALNGSIFCGETITVRVAKPNAAYRPGAPTNKTFV 365
>gi|225464121|ref|XP_002264164.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 409
Score = 68 bits (164), Expect = 2e-009
Identities = 35/97 (36%), Positives = 57/97 (58%)
Frame = +3
Query: 234 EASSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFT 413
EA+ T+ T +FV GL+ SE L+ F FGE+ VKII+++ +++S GY ++ +T
Sbjct: 307 EANQPTNIKTKKLFVTGLSFYTSEKTLRGAFEGFGELVEVKIIMDKISKRSKGYAFIEYT 366
Query: 414 KRDDAQLAVEAMNGKFFDGRFILVKFGQPGLSRRRRS 524
+ A A++ MNGK +G I+V +P + RS
Sbjct: 367 TEEAASAALKEMNGKIINGWMIVVDVAKPTPQKYSRS 403
>gi|261330753|emb|CBH13738.1| RNA-binding protein, putative [Trypanosoma brucei
gambiense DAL972]
Length = 666
Score = 68 bits (164), Expect = 2e-009
Identities = 38/115 (33%), Positives = 62/115 (53%)
Frame = +3
Query: 201 VAGDFPDDGAREASSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTR 380
V G ++ R S S++F+ GL SV++ L ++FS FG + K++++ T
Sbjct: 251 VQGTKDNNHQRVPDCSEDAIRSNLFISGLRHSVTDSGLHELFSPFGSIESAKVMLDIHTG 310
Query: 381 QSLGYGYVWFTKRDDAQLAVEAMNGKFFDGRFILVKFGQPGLSRRRRSHSDFLFV 545
+S G +V F + DAQ AVEA+NG F G I V+ +P + R + ++ FV
Sbjct: 311 RSRGIAFVKFVRLCDAQRAVEALNGSIFCGETITVRVAKPNAAYRPGAPTNKTFV 365
>gi|296087958|emb|CBI35241.3| unnamed protein product [Vitis vinifera]
Length = 315
Score = 68 bits (164), Expect = 2e-009
Identities = 35/97 (36%), Positives = 57/97 (58%)
Frame = +3
Query: 234 EASSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFT 413
EA+ T+ T +FV GL+ SE L+ F FGE+ VKII+++ +++S GY ++ +T
Sbjct: 213 EANQPTNIKTKKLFVTGLSFYTSEKTLRGAFEGFGELVEVKIIMDKISKRSKGYAFIEYT 272
Query: 414 KRDDAQLAVEAMNGKFFDGRFILVKFGQPGLSRRRRS 524
+ A A++ MNGK +G I+V +P + RS
Sbjct: 273 TEEAASAALKEMNGKIINGWMIVVDVAKPTPQKYSRS 309
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,958,629,739,972
Number of Sequences: 15229318
Number of Extensions: 2958629739972
Number of Successful Extensions: 698572373
Number of sequences better than 0.0: 0
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