BLASTX 7.6.2
Query= UN24930 /QuerySize=868
(867 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cric... 67 1e-010
sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo... 67 1e-010
sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus ... 67 1e-010
sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pong... 67 1e-010
sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus... 67 1e-010
sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xe... 64 9e-010
sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic ... 64 2e-009
sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic ... 62 3e-009
sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic ... 62 5e-009
sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic ... 62 5e-009
sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xeno... 62 6e-009
sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapi... 61 1e-008
sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xe... 60 1e-008
sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic ... 60 1e-008
sp|Q9PTX2|CIRBP_RANCA Cold-inducible RNA-binding protein OS=Rana... 60 2e-008
sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Bra... 60 2e-008
sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic ... 60 2e-008
sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic ... 59 3e-008
sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus muscu... 59 4e-008
sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis ... 58 9e-008
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus
GN=CIRBP PE=2 SV=1
Length = 172
Score = 67 bits (162), Expect = 1e-010
Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Frame = +3
Query: 252 STSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQ 431
++ +FV GL+ +E L++VFS++G++S V ++ + T++S G+G+V F DDA+
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 432 LAVEAMNGKFFDGRFILVKFGQPGLSRRRRS 524
A+ AMNGK DGR I V Q G S RS
Sbjct: 62 DAMMAMNGKSVDGRQIRV--DQAGKSSDNRS 90
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens
GN=CIRBP PE=1 SV=1
Length = 172
Score = 67 bits (162), Expect = 1e-010
Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Frame = +3
Query: 252 STSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQ 431
++ +FV GL+ +E L++VFS++G++S V ++ + T++S G+G+V F DDA+
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 432 LAVEAMNGKFFDGRFILVKFGQPGLSRRRRS 524
A+ AMNGK DGR I V Q G S RS
Sbjct: 62 DAMMAMNGKSVDGRQIRV--DQAGKSSDNRS 90
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus
GN=Cirbp PE=1 SV=1
Length = 172
Score = 67 bits (162), Expect = 1e-010
Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Frame = +3
Query: 252 STSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQ 431
++ +FV GL+ +E L++VFS++G++S V ++ + T++S G+G+V F DDA+
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 432 LAVEAMNGKFFDGRFILVKFGQPGLSRRRRS 524
A+ AMNGK DGR I V Q G S RS
Sbjct: 62 DAMMAMNGKSVDGRQIRV--DQAGKSSDNRS 90
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii
GN=CIRBP PE=2 SV=1
Length = 172
Score = 67 bits (162), Expect = 1e-010
Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Frame = +3
Query: 252 STSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQ 431
++ +FV GL+ +E L++VFS++G++S V ++ + T++S G+G+V F DDA+
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 432 LAVEAMNGKFFDGRFILVKFGQPGLSRRRRS 524
A+ AMNGK DGR I V Q G S RS
Sbjct: 62 DAMMAMNGKSVDGRQIRV--DQAGKSSDNRS 90
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus
GN=Cirbp PE=2 SV=1
Length = 172
Score = 67 bits (162), Expect = 1e-010
Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Frame = +3
Query: 252 STSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQ 431
++ +FV GL+ +E L++VFS++G++S V ++ + T++S G+G+V F DDA+
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 432 LAVEAMNGKFFDGRFILVKFGQPGLSRRRRS 524
A+ AMNGK DGR I V Q G S RS
Sbjct: 62 DAMMAMNGKSVDGRQIRV--DQAGKSSDNRS 90
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis
GN=cirbp-b PE=1 SV=1
Length = 166
Score = 64 bits (155), Expect = 9e-010
Identities = 31/72 (43%), Positives = 49/72 (68%)
Frame = +3
Query: 270 IFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQLAVEAM 449
+F+ GL +E L++VFS++G++S V ++ + T++S G+G+V F DDA+ A+ AM
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 450 NGKFFDGRFILV 485
NGK DGR I V
Sbjct: 67 NGKAVDGRQIRV 78
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2
Length = 631
Score = 64 bits (153), Expect = 2e-009
Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 7/128 (5%)
Frame = +3
Query: 165 TAKRSNPRTISCVAGDFPDDGAREASSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEV 344
T ++ + + + AG+ + EAS +S++V L SV+E L ++FS G+V
Sbjct: 32 TLEKESSESAAAAAGEGAGEEGEEAS-------ASLYVGELNPSVNEALLFEIFSPIGQV 84
Query: 345 SHVKIIVNERTRQSLGYGYVWFTKRDDAQLAVEAMNGKFFDGRFILVKFGQPGLSRRRRS 524
S +++ + T++SLGY YV F K D A+E +N DGR + + Q S RR
Sbjct: 85 SSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEELNYSLVDGRPCRIMWSQRDPSLRRNG 144
Query: 525 HSDFLFVN 548
+ N
Sbjct: 145 DGNIFIKN 152
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Pichia stipitis GN=PAB1 PE=3 SV=1
Length = 632
Score = 62 bits (150), Expect = 3e-009
Identities = 33/103 (32%), Positives = 59/103 (57%)
Frame = +3
Query: 240 SSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKR 419
S++ + ST+S++V L SV+E L ++FS G+VS +++ + +++SLGY YV + K
Sbjct: 44 SANVAESTASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKM 103
Query: 420 DDAQLAVEAMNGKFFDGRFILVKFGQPGLSRRRRSHSDFLFVN 548
+D + A+E +N +GR + + Q S RR + N
Sbjct: 104 EDGEKAIEELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKN 146
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2
Length = 627
Score = 62 bits (149), Expect = 5e-009
Identities = 33/103 (32%), Positives = 58/103 (56%)
Frame = +3
Query: 240 SSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKR 419
S+ S +++S++V L SV+E L ++FS G+V+ +++ + T++SLGY YV F K
Sbjct: 43 SAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKF 102
Query: 420 DDAQLAVEAMNGKFFDGRFILVKFGQPGLSRRRRSHSDFLFVN 548
+D + A+E +N +GR + + Q S RR + N
Sbjct: 103 EDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKN 145
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus GN=PAB1 PE=3 SV=1
Length = 661
Score = 62 bits (149), Expect = 5e-009
Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 2/126 (1%)
Frame = +3
Query: 177 SNPRTISCVAGDFPDDGARE--ASSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSH 350
+N + + P D A E SS + +++S++V L SV+E L ++FS G+V+
Sbjct: 36 NNAESSDATSSSVPADSAEEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVAS 95
Query: 351 VKIIVNERTRQSLGYGYVWFTKRDDAQLAVEAMNGKFFDGRFILVKFGQPGLSRRRRSHS 530
+++ + +++SLGY YV + K +D + A+E +N +GR + + Q S RR
Sbjct: 96 IRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDG 155
Query: 531 DFLFVN 548
+ N
Sbjct: 156 NIFIKN 161
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis
GN=cirbp PE=2 SV=1
Length = 166
Score = 62 bits (148), Expect = 6e-009
Identities = 31/78 (39%), Positives = 50/78 (64%)
Frame = +3
Query: 252 STSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQ 431
S +FV GL +E L++VFS++G+V+ V ++ + +++S G+G+V F +DA+
Sbjct: 2 SCDEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAK 61
Query: 432 LAVEAMNGKFFDGRFILV 485
A+ AMNGK DGR I V
Sbjct: 62 DAMMAMNGKSVDGRQIRV 79
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3
PE=1 SV=1
Length = 157
Score = 61 bits (146), Expect = 1e-008
Identities = 30/78 (38%), Positives = 47/78 (60%)
Frame = +3
Query: 252 STSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQ 431
S+ +FV GL + E L+ FS FG +S V ++ + T++S G+G++ FT + A
Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61
Query: 432 LAVEAMNGKFFDGRFILV 485
+A+ AMNG+ DGR I V
Sbjct: 62 VAMRAMNGESLDGRQIRV 79
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis
GN=cirbp-a PE=1 SV=2
Length = 166
Score = 60 bits (145), Expect = 1e-008
Identities = 31/83 (37%), Positives = 49/83 (59%)
Frame = +3
Query: 270 IFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQLAVEAM 449
+F+ GL +E L++ F+++G +S V ++ + T++S G+G+V F DDA+ A+ AM
Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66
Query: 450 NGKFFDGRFILVKFGQPGLSRRR 518
NGK DGR I V RR
Sbjct: 67 NGKSVDGRQIRVDQAGKSSGERR 89
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Candida albicans GN=PAB1 PE=3 SV=1
Length = 629
Score = 60 bits (145), Expect = 1e-008
Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Frame = +3
Query: 219 DDGARE--ASSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLG 392
D A E SS + +++S++V L SV+E L ++FS G+VS +++ + +++SLG
Sbjct: 35 DQSAEEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLG 94
Query: 393 YGYVWFTKRDDAQLAVEAMNGKFFDGRFILVKFGQPGLSRRRRSHSDFLFVN 548
Y YV + K +D + A+E +N +GR + + Q S RR + N
Sbjct: 95 YAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKN 146
>sp|Q9PTX2|CIRBP_RANCA Cold-inducible RNA-binding protein OS=Rana catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 60 bits (144), Expect = 2e-008
Identities = 30/78 (38%), Positives = 47/78 (60%)
Frame = +3
Query: 252 STSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQ 431
S +FV GL+ E L+ VFS++G++ V ++ + T++S G+G+V F +DA+
Sbjct: 2 SCDEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAK 61
Query: 432 LAVEAMNGKFFDGRFILV 485
A+ MNGK DGR I V
Sbjct: 62 DAMAGMNGKTVDGRQIRV 79
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus
GN=GRP10 PE=2 SV=1
Length = 169
Score = 60 bits (143), Expect = 2e-008
Identities = 32/75 (42%), Positives = 44/75 (58%)
Frame = +3
Query: 273 FVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQLAVEAMN 452
FV GLA + + L++ FS+FGEV KII + T +S G+G+V F + A++ MN
Sbjct: 9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68
Query: 453 GKFFDGRFILVKFGQ 497
GK DGR I V Q
Sbjct: 69 GKELDGRTITVNEAQ 83
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4
Length = 577
Score = 60 bits (143), Expect = 2e-008
Identities = 33/103 (32%), Positives = 52/103 (50%)
Frame = +3
Query: 240 SSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKR 419
S S S++S++V L SVSE L +FS G VS +++ + T+ SLGY YV F
Sbjct: 30 SQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDH 89
Query: 420 DDAQLAVEAMNGKFFDGRFILVKFGQPGLSRRRRSHSDFLFVN 548
+ + A+E +N GR + + Q S R++ + N
Sbjct: 90 EAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKN 132
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Candida glabrata GN=PAB1 PE=3 SV=1
Length = 579
Score = 59 bits (142), Expect = 3e-008
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Frame = +3
Query: 222 DGAREASSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGY 401
+G E + S T ++S++V L SVSE L +FS G VS +++ + T+ SLGY Y
Sbjct: 22 EGTNEENQS-ETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAY 80
Query: 402 VWFTKRDDAQLAVEAMNGKFFDGRFILVKFGQPGLSRRRRSHSDFLFVN 548
V F D A+ A+E +N G+ + + Q S R++ + N
Sbjct: 81 VNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKN 129
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3
PE=1 SV=1
Length = 153
Score = 59 bits (141), Expect = 4e-008
Identities = 30/78 (38%), Positives = 46/78 (58%)
Frame = +3
Query: 252 STSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQ 431
S+ +FV GL + E L+ FS FG +S V ++ + T++S G+G++ FT + A
Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61
Query: 432 LAVEAMNGKFFDGRFILV 485
A+ AMNG+ DGR I V
Sbjct: 62 DAMRAMNGESLDGRQIRV 79
>sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2
SV=2
Length = 375
Score = 58 bits (138), Expect = 9e-008
Identities = 28/87 (32%), Positives = 50/87 (57%)
Frame = +3
Query: 240 SSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKR 419
SS+T S +++ V L ++++ LK +F GE+ K++ ++ T QSLGYG+V +
Sbjct: 59 SSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 118
Query: 420 DDAQLAVEAMNGKFFDGRFILVKFGQP 500
DA+ A+ +NG + I V + +P
Sbjct: 119 KDAEKAINTLNGLRLQTKTIKVSYARP 145
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,745,191,639
Number of Sequences: 518415
Number of Extensions: 102745191639
Number of Successful Extensions: 656160410
Number of sequences better than 0.0: 0
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