BLASTX 7.6.2
Query= UN24930 /QuerySize=868
(867 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G19030.1 | Symbols: | RNA recognition motif (... 206 2e-053
TAIR9_protein||AT5G19030.2 | Symbols: | RNA recognition motif (... 134 1e-031
TAIR9_protein||AT5G19030.3 | Symbols: | RNA recognition motif (... 72 3e-013
TAIR9_protein||AT3G20930.1 | Symbols: | RNA recognition motif (... 65 5e-011
TAIR9_protein||AT3G08000.1 | Symbols: | RNA-binding protein, pu... 65 6e-011
TAIR9_protein||AT1G16610.1 | Symbols: SR45 | SR45; RNA binding /... 61 9e-010
TAIR9_protein||AT1G16610.2 | Symbols: SR45 | SR45; RNA binding /... 61 9e-010
TAIR9_protein||AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYC... 60 2e-009
TAIR9_protein||AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYC... 60 2e-009
TAIR9_protein||AT5G54580.1 | Symbols: | RNA recognition motif (... 58 6e-009
TAIR9_protein||AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine... 57 2e-008
TAIR9_protein||AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP... 57 2e-008
TAIR9_protein||AT4G39260.2 | Symbols: CCR1, ATGRP8, GRP8 | GR-RB... 57 2e-008
TAIR9_protein||AT4G39260.3 | Symbols: CCR1, ATGRP8, GRP8 | GR-RB... 57 2e-008
TAIR9_protein||AT1G54080.1 | Symbols: UBP1A | oligouridylate-bin... 56 2e-008
TAIR9_protein||AT1G13690.1 | Symbols: ATE1 | ATE1; nucleic acid ... 56 3e-008
TAIR9_protein||AT1G49760.1 | Symbols: PAB8, PABP8 | PAB8 (POLY(A... 55 4e-008
TAIR9_protein||AT2G27330.1 | Symbols: | RNA recognition motif (... 55 4e-008
TAIR9_protein||AT3G10400.1 | Symbols: | RNA recognition motif (... 55 4e-008
TAIR9_protein||AT3G14100.1 | Symbols: | oligouridylate-binding ... 55 4e-008
>TAIR9_protein||AT5G19030.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:6357503-6359081 REVERSE
Length = 173
Score = 206 bits (523), Expect = 2e-053
Identities = 119/174 (68%), Positives = 132/174 (75%), Gaps = 10/174 (5%)
Frame = +3
Query: 42 TLQSPFHKLQFVGVSRNRRELTIPTTAKTPTRCSLVSLCHHTAKR---SNPRTISCVAGD 212
T Q PF K ++ G+S+N R T T T R L+S HTA+ S RTISCVAG
Sbjct: 7 TFQIPFLKHRYFGMSQNLR--TPILTMSTIPRDRLIS-SFHTARSKLCSPLRTISCVAG- 62
Query: 213 FPDDGAREASSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLG 392
DD REASS S S SS+FVKG +DSVSEGRLKKVFSEFG+V++VKII NERTRQSLG
Sbjct: 63 --DDETREASSLPS-SISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLG 119
Query: 393 YGYVWFTKRDDAQLAVEAMNGKFFDGRFILVKFGQPGLSRRRRSHSDFLFVNK* 554
YGYVWF ++DAQ AVEAMNGKFFDGRFILVKFGQPGLSRRRR HSDFLFVNK*
Sbjct: 120 YGYVWFNSKEDAQSAVEAMNGKFFDGRFILVKFGQPGLSRRRRPHSDFLFVNK* 173
>TAIR9_protein||AT5G19030.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:6357570-6359024 REVERSE
Length = 127
Score = 134 bits (335), Expect = 1e-031
Identities = 79/117 (67%), Positives = 88/117 (75%), Gaps = 8/117 (6%)
Frame = +3
Query: 117 TAKTPTRCSLVSLCHHTAKR---SNPRTISCVAGDFPDDGAREASSSTSTSTSSIFVKGL 287
T T R L+S HTA+ S RTISCVAG DD REASS S S SS+FVKG
Sbjct: 11 TMSTIPRDRLIS-SFHTARSKLCSPLRTISCVAG---DDETREASSLPS-SISSLFVKGF 65
Query: 288 ADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQLAVEAMNGK 458
+DSVSEGRLKKVFSEFG+V++VKII NERTRQSLGYGYVWF ++DAQ AVEAMNGK
Sbjct: 66 SDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGK 122
>TAIR9_protein||AT5G19030.3 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:6357591-6359024 REVERSE
Length = 131
Score = 72 bits (176), Expect = 3e-013
Identities = 49/81 (60%), Positives = 56/81 (69%), Gaps = 8/81 (9%)
Frame = +3
Query: 117 TAKTPTRCSLVSLCHHTAKR---SNPRTISCVAGDFPDDGAREASSSTSTSTSSIFVKGL 287
T T R L+S HTA+ S RTISCVAG DD REASS S S SS+FVKG
Sbjct: 11 TMSTIPRDRLIS-SFHTARSKLCSPLRTISCVAG---DDETREASSLPS-SISSLFVKGF 65
Query: 288 ADSVSEGRLKKVFSEFGEVSH 350
+DSVSEGRLKKVFSEFG+V++
Sbjct: 66 SDSVSEGRLKKVFSEFGQVTN 86
>TAIR9_protein||AT3G20930.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:7331739-7333749 FORWARD
Length = 375
Score = 65 bits (157), Expect = 5e-011
Identities = 35/106 (33%), Positives = 58/106 (54%)
Frame = +3
Query: 219 DDGAREASSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYG 398
D ++ S S T +F+ GL+ SE L+ F FGE+ VKII+++ +++S GY
Sbjct: 267 DSRDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYA 326
Query: 399 YVWFTKRDDAQLAVEAMNGKFFDGRFILVKFGQPGLSRRRRSHSDF 536
++ +T + A A++ MNGK +G I+V + R+ RS F
Sbjct: 327 FLEYTTEEAAGTALKEMNGKIINGWMIVVDVAKTKPFRQNRSQPSF 372
>TAIR9_protein||AT3G08000.1 | Symbols: | RNA-binding protein, putative |
chr3:2555034-2555829 REVERSE
Length = 144
Score = 65 bits (156), Expect = 6e-011
Identities = 34/84 (40%), Positives = 55/84 (65%)
Frame = +3
Query: 240 SSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKR 419
+SS+++ +S +F+ GL+ SV E LK FS FGEV+ V+I ++ + +S G+G+V F +
Sbjct: 33 TSSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEE 92
Query: 420 DDAQLAVEAMNGKFFDGRFILVKF 491
DA A +AM+GK GR + + F
Sbjct: 93 GDALSAKDAMDGKGLLGRPLRISF 116
>TAIR9_protein||AT1G16610.1 | Symbols: SR45 | SR45; RNA binding / protein
binding | chr1:5675925-5678686 REVERSE
Length = 415
Score = 61 bits (146), Expect = 9e-010
Identities = 33/95 (34%), Positives = 48/95 (50%)
Frame = +3
Query: 216 PDDGAREASSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGY 395
P GA S + + V L+ +V+E LK++F FGEV HV+I ++ G+
Sbjct: 82 PSKGASSPSKKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGH 141
Query: 396 GYVWFTKRDDAQLAVEAMNGKFFDGRFILVKFGQP 500
GYV F R DA+ A M+G DG+ + F P
Sbjct: 142 GYVEFKARADAEKAQLYMDGAQIDGKVVKATFTLP 176
>TAIR9_protein||AT1G16610.2 | Symbols: SR45 | SR45; RNA binding / protein
binding | chr1:5675925-5678686 REVERSE
Length = 408
Score = 61 bits (146), Expect = 9e-010
Identities = 33/95 (34%), Positives = 48/95 (50%)
Frame = +3
Query: 216 PDDGAREASSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGY 395
P GA S + + V L+ +V+E LK++F FGEV HV+I ++ G+
Sbjct: 82 PSKGASSPSKKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGH 141
Query: 396 GYVWFTKRDDAQLAVEAMNGKFFDGRFILVKFGQP 500
GYV F R DA+ A M+G DG+ + F P
Sbjct: 142 GYVEFKARADAEKAQLYMDGAQIDGKVVKATFTLP 176
>TAIR9_protein||AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA binding /
single-stranded DNA binding | chr3:8606762-8607677 REVERSE
Length = 137
Score = 60 bits (144), Expect = 2e-009
Identities = 32/88 (36%), Positives = 49/88 (55%)
Frame = +3
Query: 261 TSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQLAV 440
+S +FV GL+ + LK+ F+ FGEV+ +I + T +S G+G+V F+ D A A+
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 441 EAMNGKFFDGRFILVKFGQPGLSRRRRS 524
+ M+GK +GR I V S R S
Sbjct: 94 KEMDGKELNGRQIRVNLATERSSAPRSS 121
>TAIR9_protein||AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA binding /
single-stranded DNA binding | chr3:8606762-8607677 REVERSE
Length = 137
Score = 60 bits (144), Expect = 2e-009
Identities = 32/88 (36%), Positives = 49/88 (55%)
Frame = +3
Query: 261 TSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQLAV 440
+S +FV GL+ + LK+ F+ FGEV+ +I + T +S G+G+V F+ D A A+
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 441 EAMNGKFFDGRFILVKFGQPGLSRRRRS 524
+ M+GK +GR I V S R S
Sbjct: 94 KEMDGKELNGRQIRVNLATERSSAPRSS 121
>TAIR9_protein||AT5G54580.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22171332-22172656 FORWARD
Length = 157
Score = 58 bits (139), Expect = 6e-009
Identities = 24/80 (30%), Positives = 48/80 (60%)
Frame = +3
Query: 261 TSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQLAV 440
++++FV GL+ + L+ F++FGEV+ K++ + + S G+G+V + +D+ +
Sbjct: 55 STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114
Query: 441 EAMNGKFFDGRFILVKFGQP 500
M+GKF DG I ++ +P
Sbjct: 115 AGMDGKFLDGWVIFAEYARP 134
>TAIR9_protein||AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine-rich
RNA-binding protein 5); ATP binding / RNA binding |
chr1:27915346-27916857 FORWARD
Length = 290
Score = 57 bits (135), Expect = 2e-008
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Frame = +3
Query: 258 STSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQLA 437
S+S IFV G++ S E L++ FS++GEV KIIV+ T +S G+ +V FT ++A A
Sbjct: 32 SSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNA 91
Query: 438 VEAMNGKFFDGRFILVKF 491
++ ++G+ GR I V +
Sbjct: 92 MQ-LDGQDLHGRRIRVNY 108
>TAIR9_protein||AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | GR-RBP8;
RNA binding / nucleic acid binding / nucleotide binding |
chr4:18274166-18274958 REVERSE
Length = 170
Score = 57 bits (135), Expect = 2e-008
Identities = 31/75 (41%), Positives = 45/75 (60%)
Frame = +3
Query: 273 FVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQLAVEAMN 452
FV GLA + ++ L++ FS+FG+V KII + + +S G+G+V F + A+E MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 453 GKFFDGRFILVKFGQ 497
GK DGR I V Q
Sbjct: 69 GKELDGRVITVNEAQ 83
>TAIR9_protein||AT4G39260.2 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding
/ nucleic acid binding / nucleotide binding | chr4:18274166-18274958
REVERSE
Length = 127
Score = 57 bits (135), Expect = 2e-008
Identities = 31/75 (41%), Positives = 45/75 (60%)
Frame = +3
Query: 273 FVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQLAVEAMN 452
FV GLA + ++ L++ FS+FG+V KII + + +S G+G+V F + A+E MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 453 GKFFDGRFILVKFGQ 497
GK DGR I V Q
Sbjct: 69 GKELDGRVITVNEAQ 83
>TAIR9_protein||AT4G39260.3 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding
/ nucleic acid binding / nucleotide binding | chr4:18274166-18274958
REVERSE
Length = 93
Score = 57 bits (135), Expect = 2e-008
Identities = 31/75 (41%), Positives = 45/75 (60%)
Frame = +3
Query: 273 FVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQLAVEAMN 452
FV GLA + ++ L++ FS+FG+V KII + + +S G+G+V F + A+E MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 453 GKFFDGRFILVKFGQ 497
GK DGR I V Q
Sbjct: 69 GKELDGRVITVNEAQ 83
>TAIR9_protein||AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein,
putative | chr1:20183923-20186824 REVERSE
Length = 427
Score = 56 bits (134), Expect = 2e-008
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Frame = +3
Query: 225 GAREASSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYV 404
G RE +S S +IFV L+ V++ L FS F S +++ +++T +S G+G+V
Sbjct: 139 GQREDTS----SHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFV 194
Query: 405 WFTKRDDAQLAVEAMNGKFFDGRFILVKFGQPGLSRRRRSHS 530
F + DAQ A+ MNGK+ R I + G + HS
Sbjct: 195 SFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHS 236
>TAIR9_protein||AT1G13690.1 | Symbols: ATE1 | ATE1; nucleic acid binding /
nucleotide binding | chr1:4693380-4694179 FORWARD
Length = 178
Score = 56 bits (133), Expect = 3e-008
Identities = 26/79 (32%), Positives = 47/79 (59%)
Frame = +3
Query: 264 SSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQLAVE 443
++++V GLAD V+E L F FG++ VK +++ ++ +G+V F +R+DA A++
Sbjct: 13 NTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMD 72
Query: 444 AMNGKFFDGRFILVKFGQP 500
M+G GR + V + P
Sbjct: 73 NMDGAELYGRVLTVNYALP 91
>TAIR9_protein||AT1G49760.1 | Symbols: PAB8, PABP8 | PAB8 (POLY(A) BINDING
PROTEIN 8); RNA binding / translation initiation factor |
chr1:18416740-18419753 FORWARD
Length = 672
Score = 55 bits (132), Expect = 4e-008
Identities = 32/107 (29%), Positives = 56/107 (52%)
Frame = +3
Query: 228 AREASSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVW 407
A A+ + T+S++V L +V++ +L + F++ G+V V++ + TR+SLGYGYV
Sbjct: 33 AAAAAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVN 92
Query: 408 FTKRDDAQLAVEAMNGKFFDGRFILVKFGQPGLSRRRRSHSDFLFVN 548
+ DA A+ +N +GR I V + S R+ + N
Sbjct: 93 YATPQDASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKN 139
>TAIR9_protein||AT2G27330.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:11695350-11696563 REVERSE
Length = 117
Score = 55 bits (132), Expect = 4e-008
Identities = 24/75 (32%), Positives = 51/75 (68%)
Frame = +3
Query: 261 TSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKRDDAQLAV 440
+S++FVKG++ S +E L + FS++G+V V +I+++ + G+ YV F+ +++A+ A+
Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Query: 441 EAMNGKFFDGRFILV 485
+N + DGR +++
Sbjct: 80 LELNAQLVDGRVVIL 94
>TAIR9_protein||AT3G10400.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:3232636-3233421 FORWARD
Length = 262
Score = 55 bits (132), Expect = 4e-008
Identities = 27/82 (32%), Positives = 47/82 (57%)
Frame = +3
Query: 240 SSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYVWFTKR 419
S + S S+++V L S++ + +FS FG+V+ V ++ + TRQS G +V + R
Sbjct: 49 SGGLAPSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSR 108
Query: 420 DDAQLAVEAMNGKFFDGRFILV 485
+DA A +M+ K +GR + V
Sbjct: 109 EDAAKAARSMDAKILNGRKLTV 130
>TAIR9_protein||AT3G14100.1 | Symbols: | oligouridylate-binding protein,
putative | chr3:4673027-4675950 FORWARD
Length = 428
Score = 55 bits (132), Expect = 4e-008
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Frame = +3
Query: 225 GAREASSSTSTSTSSIFVKGLADSVSEGRLKKVFSEFGEVSHVKIIVNERTRQSLGYGYV 404
G RE +S S +IFV L+ V++ L + FS F S +++ +++T +S G+G+V
Sbjct: 135 GQREDTS----SHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFV 190
Query: 405 WFTKRDDAQLAVEAMNGKFFDGRFILVKFGQPG 503
F + DAQ A+ MNGK+ R I + G
Sbjct: 191 SFRNQQDAQTAINEMNGKWLSSRQIRCNWATKG 223
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,770,432,235
Number of Sequences: 33410
Number of Extensions: 12770432235
Number of Successful Extensions: 408009821
Number of sequences better than 0.0: 0
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