BLASTX 7.6.2
Query= UN25251 /QuerySize=1166
(1165 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G55460.1 | Symbols: SCL30 | SCL30; RNA binding... 364 6e-101
TAIR9_protein||AT3G13570.1 | Symbols: SCL30A | SCL30a; RNA bindi... 190 3e-048
TAIR9_protein||AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33 | SR3... 178 8e-045
TAIR9_protein||AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33 | SR3... 173 3e-043
TAIR9_protein||AT5G18810.1 | Symbols: SCL28 | SCL28; RNA binding... 156 2e-038
TAIR9_protein||AT5G64200.1 | Symbols: ATSC35, SC35 | ATSC35; RNA... 88 8e-018
TAIR9_protein||AT5G64200.2 | Symbols: ATSC35, SC35 | ATSC35; RNA... 88 8e-018
TAIR9_protein||AT3G49430.1 | Symbols: SRp34a | SRp34a (Ser/Arg-r... 88 1e-017
TAIR9_protein||AT3G49430.2 | Symbols: SRp34a | SRp34a (Ser/Arg-r... 75 5e-014
TAIR9_protein||AT2G21440.1 | Symbols: | RNA recognition motif (... 70 2e-012
TAIR9_protein||AT4G02430.2 | Symbols: | pre-mRNA splicing facto... 67 2e-011
TAIR9_protein||AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34 | SR1;... 62 5e-010
TAIR9_protein||AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34 | SR1;... 62 5e-010
TAIR9_protein||AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34 | SR1;... 56 3e-008
TAIR9_protein||AT3G06480.1 | Symbols: | DEAD box RNA helicase, ... 52 6e-007
TAIR9_protein||AT3G54230.1 | Symbols: | nucleic acid binding / ... 50 3e-006
>TAIR9_protein||AT3G55460.1 | Symbols: SCL30 | SCL30; RNA binding / nucleic acid
binding / nucleotide binding | chr3:20561024-20563502 FORWARD
Length = 263
Score = 364 bits (934), Expect = 6e-101
Identities = 193/247 (78%), Positives = 196/247 (79%), Gaps = 15/247 (6%)
Frame = -3
Query: 1109 RRYSPPYYSPPRRGYGGRGRS-PPPPPRRGY--GGGGGGRKGSSHGSLLVRNIPLDCRPE 939
RRYSPPYYSPPRRGYGGRGRS PPPPPRRGY GGGGGGR+GSSHGSLLVRNIPLDCRPE
Sbjct: 2 RRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPE 61
Query: 938 ELRVPFERFGPVRDVYIPRDYYSGEPRGFAFVEFVDAYDAGEAQRSMNRRVFGGREITVV 759
ELR PFERFGPVRDVYIPRDYYSG+PRGFAFVEFVDAYDAGEAQRSMNRR F GREITVV
Sbjct: 62 ELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVV 121
Query: 758 VASESRKRPEEMRVKTRTRSREPSGSRGRSHGRSRSRSISRSRSPRRPSDSRSRRRSRSY 579
VASESRKRPEEMRVKTRTRSREPSGSR RSHGRSRSRSISRSRSPRRPSDSRSR RSRSY
Sbjct: 122 VASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSRYRSRSY 181
Query: 578 SPAPRRRGADYSASPRRRQEERPRSP------LRSPPRGEGDAKYSRRSYSPGYEGATAA 417
SPAPRRRG R SP +P R R PGYE A
Sbjct: 182 SPAPRRRGGPPRGEEDENYSRRSYSPGYEGAAAAAPDRDRNGDNEIRE--KPGYE----A 235
Query: 416 EDRDTNG 396
EDR G
Sbjct: 236 EDRRRGG 242
Score = 143 bits (359), Expect = 3e-034
Identities = 91/159 (57%), Positives = 98/159 (61%), Gaps = 20/159 (12%)
Frame = -3
Query: 728 EMRVKTRTRSRE-PSGSRGRSHGRSRSRSISRSRSPRRPSDSRSRRRSRSYSP------A 570
E+ V + SR+ P R ++ RSR S SR RS R SRSR SRS SP
Sbjct: 117 EITVVVASESRKRPEEMRVKTRTRSREPSGSRDRSHGR---SRSRSISRSRSPRRPSDSR 173
Query: 569 PRRRGADYSASPRRRQEERPRSPLRSPPRGEGDAKYSRRSYSPGYEG-ATAAEDRDTNGD 393
R R YS +PRRR PPRGE D YSRRSYSPGYEG A AA DRD NGD
Sbjct: 174 SRYRSRSYSPAPRRR---------GGPPRGEEDENYSRRSYSPGYEGAAAAAPDRDRNGD 224
Query: 392 NETREKPDYEPEERRRGGREVSRSPSGSRSRSVEASPR* 276
NE REKP YE E+RRRGGR VSRSPSGSRSRSVE SPR*
Sbjct: 225 NEIREKPGYEAEDRRRGGRAVSRSPSGSRSRSVEVSPR* 263
>TAIR9_protein||AT3G13570.1 | Symbols: SCL30A | SCL30a; RNA binding / nucleic
acid binding / nucleotide binding | chr3:4429564-4431602 REVERSE
Length = 263
Score = 190 bits (480), Expect = 3e-048
Identities = 121/271 (44%), Positives = 150/271 (55%), Gaps = 25/271 (9%)
Frame = -3
Query: 1091 YYSPPRRGYGGRGRSPPPPPRRGYGGGGGGRKGSSHGSLLVRNIPLDCRPEELRVPFERF 912
Y P RGYG RGRSP P G GG R SLLVRN+ DCR E+LR PFE+F
Sbjct: 6 YTPSPPRGYGRRGRSPSP-----RGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQF 60
Query: 911 GPVRDVYIPRDYYSGEPRGFAFVEFVDAYDAGEAQRSMNRRVFGGREITVVVASESRKRP 732
GPV+D+Y+PRDYY+G+PRGF F++F+D DA EA+ M+ + GRE+TVV A E+RK+P
Sbjct: 61 GPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKP 120
Query: 731 EEMRVKTRTRSREPSGSRGRSHGRSRSRSISRSRSPRRPSDSRSRRRSRSYSPAPRRRGA 552
EM RTR R +R + RS R SRS PRR RSR RSR Y+ P +R
Sbjct: 121 TEM----RTRDRGGRSNRFQDRRRSPPR-YSRSPPPRR--GRRSRSRSRGYNSPPAKRHQ 173
Query: 551 DYSASPRRRQEERPRSPLRSPPRGEGDAKYSRRSYSPGYEGATAAEDRDTNGDNETREKP 372
S SP+ R+ E+ RS RSPP RS SP G + R R+
Sbjct: 174 SRSVSPQDRRYEKERSYSRSPPHNGSRV----RSGSP---GRVKSHSRSPRRSVSPRKNR 226
Query: 371 DYEPEERRRGGREVSRSPSGSRSRSVEASPR 279
Y PE+ R S+SP +SRS PR
Sbjct: 227 SYTPEQAR------SQSPVPRQSRSPTPVPR 251
>TAIR9_protein||AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33 | SR33; RNA binding
/ protein binding | chr1:20630676-20632695 FORWARD
Length = 288
Score = 178 bits (450), Expect = 8e-045
Identities = 117/269 (43%), Positives = 146/269 (54%), Gaps = 27/269 (10%)
Frame = -3
Query: 1088 YSP-PRRGYGGRGRSPPPPPRRGYGGGGGGRKGSSHGSLLVRNIPLDCRPEELRVPFERF 912
Y+P P RGYG RGRSP P G GGR SLLVRN+ DCR E+LR FE+F
Sbjct: 6 YTPSPPRGYGRRGRSPSP------RGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQF 59
Query: 911 GPVRDVYIPRDYYSGEPRGFAFVEFVDAYDAGEAQRSMNRRVFGGREITVVVASESRKRP 732
GPV+D+Y+PRDYY+G+PRGF FV+F+D DA +A+ M+ + GRE+TVV A E+RK+P
Sbjct: 60 GPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKP 119
Query: 731 EEMRVKTRTRSREPSGSRGRSHGRSRSRSISRSRSPRRPSDSRSRRRSRSYSPAPRRRGA 552
EM R+RE G R R R+ R SRSRSP P RSR RS Y P RR
Sbjct: 120 TEM------RARERGGGRFRDRRRTPPRYYSRSRSP-PPRRGRSRSRSGDYYSPPPRRHH 172
Query: 551 DYSASPRRRQEERPRSPLRSPP------RGEGDAKYSRRSYSPGYEGATAAEDRDTNGDN 390
S SPR + + RS RSP R + RS SP + + R + +
Sbjct: 173 PRSISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLSPSPRRSISRSPRRSRSPS 232
Query: 389 ETREKPDYEPEERRRGGREVSRSPSGSRS 303
R + P R +SRSP SRS
Sbjct: 233 PKRNR-SVSPR------RSISRSPRRSRS 254
>TAIR9_protein||AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33 | SR33; RNA binding
/ protein binding | chr1:20630676-20632567 FORWARD
Length = 221
Score = 173 bits (436), Expect = 3e-043
Identities = 108/228 (47%), Positives = 131/228 (57%), Gaps = 20/228 (8%)
Frame = -3
Query: 1088 YSP-PRRGYGGRGRSPPPPPRRGYGGGGGGRKGSSHGSLLVRNIPLDCRPEELRVPFERF 912
Y+P P RGYG RGRSP P G GGR SLLVRN+ DCR E+LR FE+F
Sbjct: 6 YTPSPPRGYGRRGRSPSP------RGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQF 59
Query: 911 GPVRDVYIPRDYYSGEPRGFAFVEFVDAYDAGEAQRSMNRRVFGGREITVVVASESRKRP 732
GPV+D+Y+PRDYY+G+PRGF FV+F+D DA +A+ M+ + GRE+TVV A E+RK+P
Sbjct: 60 GPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKP 119
Query: 731 EEMRVKTRTRSREPSGSRGRSHGRSRSRSISRSRSPRRPSDSRSRRRSRSYSPAPRRRGA 552
EM R+RE G R R R+ R SRSRSP P RSR RS Y P RR
Sbjct: 120 TEM------RARERGGGRFRDRRRTPPRYYSRSRSP-PPRRGRSRSRSGDYYSPPPRRHH 172
Query: 551 DYSASPRRRQEERPRSPLRSPP------RGEGDAKYSRRSYSPGYEGA 426
S SPR + + RS RSP R + RS SP E A
Sbjct: 173 PRSISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLSPTQEEA 220
>TAIR9_protein||AT5G18810.1 | Symbols: SCL28 | SCL28; RNA binding / nucleic acid
binding / nucleotide binding | chr5:6268925-6271158 REVERSE
Length = 237
Score = 156 bits (394), Expect = 2e-038
Identities = 96/215 (44%), Positives = 118/215 (54%), Gaps = 21/215 (9%)
Frame = -3
Query: 1073 RGYGGRGRS-PPPPPRRGYGG-------GGGGRKGSSHGSLLVRNIPLDCRPEELRVPFE 918
R Y R R PP R+GY + S LL+RN+PLD RP +LR FE
Sbjct: 9 RSYSPRPRDRSPPRERKGYDDNRLRERPSSRDHESSGPSGLLIRNLPLDARPNDLRDSFE 68
Query: 917 RFGPVRDVYIPRDYYSGEPRGFAFVEFVDAYDAGEAQRSMNRRVFGGREITVVVASESRK 738
RFGP++D+Y+PR+YY+GEPRGF FV++ A DA EA + MN +V GGREI +V A E+RK
Sbjct: 69 RFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFAEENRK 128
Query: 737 RPEEMRVKTRTRSREPSGSR-GRSHGRSRSRSISRSRSPRRPSDSRS----------RRR 591
P+EMR T R R R R RS SRSRSP R S RRR
Sbjct: 129 TPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESRHSKVREDDLYSPRRR 188
Query: 590 SRSY--SPAPRRRGADYSASPRRRQEERPRSPLRS 492
SRS SP PR S + R +EER +P+RS
Sbjct: 189 SRSISRSPLPRNEREYKSRNCRSPREERVLTPIRS 223
>TAIR9_protein||AT5G64200.1 | Symbols: ATSC35, SC35 | ATSC35; RNA binding /
nucleic acid binding / nucleotide binding | chr5:25681849-25683553
REVERSE
Length = 304
Score = 88 bits (217), Expect = 8e-018
Identities = 73/180 (40%), Positives = 87/180 (48%), Gaps = 12/180 (6%)
Frame = -3
Query: 1004 GRKG----SSHGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPRDYYSGEPRGFAFVEF 837
GR G S SLLV NI ++L F ++G V DV+IPRD +G+ RGFAFV +
Sbjct: 5 GRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRY 64
Query: 836 VDAYDAGEAQRSMNRRVFGGREITVVVASESRKRPEEMRVKTRTRSREPSGSRGRSHGRS 657
+A +A ++ RV GREITV A E K R P R RS
Sbjct: 65 KYKDEAHKAVERLDGRVVDGREITVQFAKYGPN--AEKISKGRVVEPPPKSRRSRSRSPR 122
Query: 656 RSRSISRSRSP---RRPSDSRS-RRRSRS--YSPAPRRRGADYSASPRRRQEERPRSPLR 495
RSRS RSRSP R P SRS RRRSR R+R S R R EE+ R R
Sbjct: 123 RSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDHRR 182
Score = 57 bits (137), Expect = 2e-008
Identities = 44/124 (35%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Frame = -3
Query: 653 SRSISRSRSPRRPSDSRSRRRSRSYSPAPRRRGADYSASPRRRQEERPRSPLRSPPRGEG 474
+ IS+ R P S RRSRS SP R + PRRR R RSP R
Sbjct: 98 AEKISKGRVVEPPPKS---RRSRSRSPRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYR 154
Query: 473 DAKYSRRSYSPGYEGATAAEDRDTNGDNETREKPDYEPEERRRGGREVSRSPSGSRSRSV 294
+ Y +RS S Y+ E++D + TR + E+RR GR + S S SRS+
Sbjct: 155 EKDYRKRSRSRSYDRRERHEEKDRDHRRRTRSRSASPDEKRRVRGR--YDNESRSHSRSL 212
Query: 293 EASP 282
ASP
Sbjct: 213 SASP 216
>TAIR9_protein||AT5G64200.2 | Symbols: ATSC35, SC35 | ATSC35; RNA binding /
nucleic acid binding / nucleotide binding | chr5:25681849-25683553
REVERSE
Length = 304
Score = 88 bits (217), Expect = 8e-018
Identities = 73/180 (40%), Positives = 87/180 (48%), Gaps = 12/180 (6%)
Frame = -3
Query: 1004 GRKG----SSHGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPRDYYSGEPRGFAFVEF 837
GR G S SLLV NI ++L F ++G V DV+IPRD +G+ RGFAFV +
Sbjct: 5 GRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRY 64
Query: 836 VDAYDAGEAQRSMNRRVFGGREITVVVASESRKRPEEMRVKTRTRSREPSGSRGRSHGRS 657
+A +A ++ RV GREITV A E K R P R RS
Sbjct: 65 KYKDEAHKAVERLDGRVVDGREITVQFAKYGPN--AEKISKGRVVEPPPKSRRSRSRSPR 122
Query: 656 RSRSISRSRSP---RRPSDSRS-RRRSRS--YSPAPRRRGADYSASPRRRQEERPRSPLR 495
RSRS RSRSP R P SRS RRRSR R+R S R R EE+ R R
Sbjct: 123 RSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDHRR 182
Score = 57 bits (137), Expect = 2e-008
Identities = 44/124 (35%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Frame = -3
Query: 653 SRSISRSRSPRRPSDSRSRRRSRSYSPAPRRRGADYSASPRRRQEERPRSPLRSPPRGEG 474
+ IS+ R P S RRSRS SP R + PRRR R RSP R
Sbjct: 98 AEKISKGRVVEPPPKS---RRSRSRSPRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYR 154
Query: 473 DAKYSRRSYSPGYEGATAAEDRDTNGDNETREKPDYEPEERRRGGREVSRSPSGSRSRSV 294
+ Y +RS S Y+ E++D + TR + E+RR GR + S S SRS+
Sbjct: 155 EKDYRKRSRSRSYDRRERHEEKDRDHRRRTRSRSASPDEKRRVRGR--YDNESRSHSRSL 212
Query: 293 EASP 282
ASP
Sbjct: 213 SASP 216
>TAIR9_protein||AT3G49430.1 | Symbols: SRp34a | SRp34a (Ser/Arg-rich protein
34a); RNA binding / nucleic acid binding / nucleotide binding |
chr3:18332668-18334829 FORWARD
Length = 301
Score = 88 bits (216), Expect = 1e-017
Identities = 75/218 (34%), Positives = 103/218 (47%), Gaps = 29/218 (13%)
Frame = -3
Query: 1085 SPPRRGYGGRGRSPPPPPRRGYGGGGGG----RKGSSHGS---LLVRNIPLDCRPEELRV 927
S R GYGG G GYGGGGGG R G S S ++VR +P ++L+
Sbjct: 89 SDRRGGYGGGG--------SGYGGGGGGGGSARFGVSRHSEFRVIVRGLPSSASWQDLKD 140
Query: 926 PFERFGPVRDVYIPRDYYSGEPRGFAFVEFVDAYDAGEAQRSMNRRVF---GGREITVVV 756
+ G V + RD + V++ + D A R ++ F R V
Sbjct: 141 HMRKAGDVCFAEVTRD----SDGTYGVVDYTNYDDMKYAIRKLDDTEFRNPWARGFIRVK 196
Query: 755 ASESRKRPEEMRVKTRTRSREPSGSRGRSHGRSRSRSISRSRSPRR-----PSDSRSRRR 591
ES + ++R+RSR S SRGR SRSRS+SRS+SPR+ P S SR
Sbjct: 197 KYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRSLSRSI 256
Query: 590 SRSYSPAPRRRGADYSASPR--RRQEERPRSPLRSPPR 483
S+S SP+P ++ + A R R R RSP +SPP+
Sbjct: 257 SKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSPSKSPPK 294
>TAIR9_protein||AT3G49430.2 | Symbols: SRp34a | SRp34a (Ser/Arg-rich protein
34a); RNA binding / nucleic acid binding / nucleotide binding |
chr3:18332668-18334617 FORWARD
Length = 298
Score = 75 bits (184), Expect = 5e-014
Identities = 65/191 (34%), Positives = 90/191 (47%), Gaps = 27/191 (14%)
Frame = -3
Query: 1085 SPPRRGYGGRGRSPPPPPRRGYGGGGGG----RKGSSHGS---LLVRNIPLDCRPEELRV 927
S R GYGG G GYGGGGGG R G S S ++VR +P ++L+
Sbjct: 89 SDRRGGYGGGG--------SGYGGGGGGGGSARFGVSRHSEFRVIVRGLPSSASWQDLKD 140
Query: 926 PFERFGPVRDVYIPRDYYSGEPRGFAFVEFVDAYDAGEAQRSMNRRVF---GGREITVVV 756
+ G V + RD + V++ + D A R ++ F R V
Sbjct: 141 HMRKAGDVCFAEVTRD----SDGTYGVVDYTNYDDMKYAIRKLDDTEFRNPWARGFIRVK 196
Query: 755 ASESRKRPEEMRVKTRTRSREPSGSRGRSHGRSRSRSISRSRSPRR-----PSDSRSRRR 591
ES + ++R+RSR S SRGR SRSRS+SRS+SPR+ P S SR
Sbjct: 197 KYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRSLSRSI 256
Query: 590 SRSYSPAPRRR 558
S+S SP+P ++
Sbjct: 257 SKSRSPSPDKK 267
>TAIR9_protein||AT2G21440.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:9173712-9179065 REVERSE
Length = 1004
Score = 70 bits (170), Expect = 2e-012
Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Frame = -3
Query: 1013 GGGGRKGSSHGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPRDYYSGEPRGFAFVEFV 834
GG G K + L++RN+P +P +++V F G V DV+IP+++ +G P+GFAFV+F
Sbjct: 322 GGEGSK-AQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFT 380
Query: 833 DAYDAGEAQRSMNRRVFGGREITVVVASESRKRPEEMRVKTRTRSREPSGSRGRSHGRS 657
DA A + N +FG R I V A T + + GS G S S
Sbjct: 381 CKKDAANAIKKFNGHMFGKRPIAVDWAVPKNIYNGAADATTASADGDKEGSDGDSENSS 439
Score = 56 bits (134), Expect = 3e-008
Identities = 46/167 (27%), Positives = 67/167 (40%), Gaps = 6/167 (3%)
Frame = -3
Query: 1004 GRKGSSH--GSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPRDYYSGEPRGFAFVEFVD 831
G + S H ++ V +P +L F GPVR ++ + S E RGFAFV+F
Sbjct: 11 GEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFAL 70
Query: 830 AYDAGEAQRSMNRRVFGGREITVVVASESRKRPEEMRVKTRTRSREPSGSRGRSHGRSRS 651
D A N GGR ITV A+ R +E R K P S+G+S +
Sbjct: 71 QEDVNRAIELKNGSTVGGRRITVKQAAH-RPSLQERRTKAAEGISVPDNSQGQSDKDTSI 129
Query: 650 RSISRSRSPRRPSDSRSRRRSRSYSPAPRRRGADYSASPRRRQEERP 510
SP + R + P R++ R++ E+P
Sbjct: 130 PETDEKVSPPEKKLEKPVERKKVEKPIERKQ---VEKPVERKKAEKP 173
>TAIR9_protein||AT4G02430.2 | Symbols: | pre-mRNA splicing factor, putative /
SR1 protein, putative | chr4:1069186-1071313 FORWARD
Length = 279
Score = 67 bits (162), Expect = 2e-011
Identities = 67/188 (35%), Positives = 84/188 (44%), Gaps = 19/188 (10%)
Frame = -3
Query: 1076 RRGYGGRGRSPPPPPRRGYGGGGGGRKGSSHGS---LLVRNIPLDCRPEELRVPFERFGP 906
R Y GRGR RG G GGG +G S S ++V +P ++L+ + G
Sbjct: 91 RGSYSGRGRG-----GRGGGDGGGRERGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGE 145
Query: 905 VRDVYIPRDYYSGEPRG-FAFVEFVDAYDAGEAQRSMNRRVFGGREITVVVASESRKRPE 729
V + RD RG V++ D A R E V +SR+
Sbjct: 146 VCFSQVFRD-----GRGTTGIVDYTSYEDMKYALDDTEFRNAFSHEYVRVREYDSRR--- 197
Query: 728 EMRVKTRTRSREPSGSRGRSHGRSRSRSISR--SRSPRRPSDSRSRRRSRSYSPAPRRRG 555
+ R +R RS S SRGRS RSRSRS SR SRSP+ S RS +S S SP R R
Sbjct: 198 DSRSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSRSPKAKSLRRSPAKSTSRSPRSRSRS 257
Query: 554 ADYSASPR 531
S SPR
Sbjct: 258 KSRSLSPR 265
>TAIR9_protein||AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34 | SR1; RNA binding /
nucleic acid binding / nucleotide binding | chr1:626918-629583 FORWARD
Length = 304
Score = 62 bits (150), Expect = 5e-010
Identities = 44/87 (50%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Frame = -3
Query: 710 RTRSREPSGSRGRSHGRSRSRSISRSRSPRRPSDSRSRRRSRSYSPAPRRRGADYSASPR 531
R+ S+ S SRGRS RSRSRS SRSRSP+ S RS +S S SP PR + S SP
Sbjct: 208 RSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSR--SPSP- 264
Query: 530 RRQEERPRSPLRSPPRGEGDAKYSRRS 450
RR R RSPL S + EG S+ S
Sbjct: 265 RRSRSRSRSPLPSVQK-EGSKSPSKPS 290
>TAIR9_protein||AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34 | SR1; RNA binding /
nucleic acid binding / nucleotide binding | chr1:626918-629583 FORWARD
Length = 304
Score = 62 bits (150), Expect = 5e-010
Identities = 44/87 (50%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Frame = -3
Query: 710 RTRSREPSGSRGRSHGRSRSRSISRSRSPRRPSDSRSRRRSRSYSPAPRRRGADYSASPR 531
R+ S+ S SRGRS RSRSRS SRSRSP+ S RS +S S SP PR + S SP
Sbjct: 208 RSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSR--SPSP- 264
Query: 530 RRQEERPRSPLRSPPRGEGDAKYSRRS 450
RR R RSPL S + EG S+ S
Sbjct: 265 RRSRSRSRSPLPSVQK-EGSKSPSKPS 290
>TAIR9_protein||AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34 | SR1; RNA binding /
nucleic acid binding / nucleotide binding | chr1:626918-628995 FORWARD
Length = 286
Score = 56 bits (134), Expect = 3e-008
Identities = 34/61 (55%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = -3
Query: 710 RTRSREPSGSRGRSHGRSRSRSISRSRSPRRPSDSRSRRRSRSYSPAPRRRGADYSASPR 531
R+ S+ S SRGRS RSRSRS SRSRSP+ S RS +S S SP PR + S SPR
Sbjct: 208 RSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSR--SPSPR 265
Query: 530 R 528
R
Sbjct: 266 R 266
>TAIR9_protein||AT3G06480.1 | Symbols: | DEAD box RNA helicase, putative |
chr3:1985697-1989666 REVERSE
Length = 1089
Score = 52 bits (123), Expect = 6e-007
Identities = 34/65 (52%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Frame = -3
Query: 746 SRKR-PEEMRVKTR----TRSREPSGSRGRSHGRSRSRSISRSRSPRRPSDSRSRRRSRS 582
SR R P+ +R + R +RSR SGS RS RSRS S SRSRSPR D RSRS
Sbjct: 954 SRSRSPDLVRPRRRSSSYSRSRSRSGSYSRSRSRSRSWSRSRSRSPRHSRDRGGHNRSRS 1013
Query: 581 YSPAP 567
YS +P
Sbjct: 1014 YSRSP 1018
>TAIR9_protein||AT3G54230.1 | Symbols: | nucleic acid binding / nucleotide
binding / zinc ion binding | chr3:20073872-20080142 FORWARD
Length = 1008
Score = 50 bits (117), Expect = 3e-006
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = -3
Query: 1025 GYGGGGGGRKGSSHGS---LLVRNIPLDCRPEELRVPFERFGPVRDVYIPRDYYSGEPRG 855
G G++ S G L+VR + D E LR F + P++D+ + RD ++ RG
Sbjct: 415 GLSNSAAGKRISETGPTHVLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRG 474
Query: 854 FAFVEFVDAYDAGEAQRSMNR 792
FAFV F DA +A + NR
Sbjct: 475 FAFVHFYSVEDATKALEATNR 495
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,904,828,436
Number of Sequences: 33410
Number of Extensions: 12904828436
Number of Successful Extensions: 408053267
Number of sequences better than 0.0: 0
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