BLASTX 7.6.2
Query= UN25331 /QuerySize=1212
(1211 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT... 473 3e-131
gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabido... 466 4e-129
gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thal... 465 1e-128
gi|225440003|ref|XP_002281642.1| PREDICTED: hypothetical protein... 312 1e-082
gi|1350820|sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucle... 295 9e-078
gi|224069480|ref|XP_002326357.1| predicted protein [Populus tric... 293 6e-077
gi|1350821|sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucle... 290 4e-076
gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucl... 289 1e-075
gi|255639723|gb|ACU20155.1| unknown [Glycine max] 280 3e-073
gi|681902|dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis ... 215 2e-053
gi|15231817|ref|NP_190914.1| chloroplast RNA-binding protein 29 ... 215 2e-053
gi|681904|dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis ... 213 5e-053
gi|297820076|ref|XP_002877921.1| hypothetical protein ARALYDRAFT... 212 1e-052
gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast,... 190 7e-046
gi|224140195|ref|XP_002323470.1| predicted protein [Populus tric... 175 1e-041
gi|334185950|ref|NP_001190079.1| chloroplast RNA-binding protein... 171 3e-040
>gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714
[Arabidopsis lyrata subsp. lyrata]
Length = 289
Score = 473 bits (1216), Expect = 3e-131
Identities = 249/295 (84%), Positives = 261/295 (88%), Gaps = 13/295 (4%)
Frame = +3
Query: 30 AASASSLALSTFNPKSLPFSISRPASTPFLPPSLSFKLNHQSISLSVSA-----ASRFVR 194
AASASSLALS+FNPKSLPF +SRPAS LPPSLSFKLN S+S S++A ASRFVR
Sbjct: 2 AASASSLALSSFNPKSLPFCVSRPASVSLLPPSLSFKLNSDSVSFSIAAKWNSPASRFVR 61
Query: 195 NVAVTDDINVEEEDSLFSDDDAAPPPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESA 374
NVA+T + VEE+ DDAAP Q+QSFSADLKLFVGNLPF+VDSAQLAQLFESA
Sbjct: 62 NVAITSEFEVEEDGFA---DDAAP----QQQSFSADLKLFVGNLPFNVDSAQLAQLFESA 114
Query: 375 GNVEMVEVIYDKVTGRSRSFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKRE 554
GNVEMVEVIYDKVTGRSR FGFVTMSSVSEVEAA QFNGYELDGR LRVNAGPPPPKRE
Sbjct: 115 GNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAANQFNGYELDGRPLRVNAGPPPPKRE 174
Query: 555 DSFSRGPRSSFGSSGSGYGGGGG-GAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEAR 731
D FSRGPRSSFGSSGSGYGGGGG GAGSGNRVYVGNLSWGVDDMALESLF EQGKV EAR
Sbjct: 175 DGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFAEQGKVVEAR 234
Query: 732 VIYDRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 896
VIYDRDSGRSKGFGFVTYNS+QEVQNAI +LNGADLDGRQIRVSEAEARPPRRQF
Sbjct: 235 VIYDRDSGRSKGFGFVTYNSSQEVQNAINSLNGADLDGRQIRVSEAEARPPRRQF 289
>gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 289
Score = 466 bits (1198), Expect = 4e-129
Identities = 244/295 (82%), Positives = 261/295 (88%), Gaps = 13/295 (4%)
Frame = +3
Query: 30 AASASSLALSTFNPKSLPFSISRPASTPFLPPSLSFKLNHQSISLSVSA-----ASRFVR 194
AASASSLALS+FNPKSLPF +SRPAS L PSLSFKLN S+S S++A ASRFVR
Sbjct: 2 AASASSLALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKWNSPASRFVR 61
Query: 195 NVAVTDDINVEEEDSLFSDDDAAPPPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESA 374
NVA+T + VEE+ D APP +EQSFSADLKLFVGNLPF+VDSAQLAQLFESA
Sbjct: 62 NVAITSEFEVEEDGFA----DVAPP---KEQSFSADLKLFVGNLPFNVDSAQLAQLFESA 114
Query: 375 GNVEMVEVIYDKVTGRSRSFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKRE 554
GNVEMVEVIYDK+TGRSR FGFVTMSSVSEVEAA QQFNGYELDGR LRVNAGPPPPKRE
Sbjct: 115 GNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRE 174
Query: 555 DSFSRGPRSSFGSSGSGYGGGGG-GAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEAR 731
D FSRGPRSSFGSSGSGYGGGGG GAGSGNRVYVGNLSWGVDDMALESLF EQGKV EAR
Sbjct: 175 DGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEAR 234
Query: 732 VIYDRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 896
VIYDRDSGRSKGFGFVTY+S+QEVQNAI++L+GADLDGRQIRVSEAEARPPRRQ+
Sbjct: 235 VIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
>gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thaliana]
Length = 289
Score = 465 bits (1194), Expect = 1e-128
Identities = 243/295 (82%), Positives = 260/295 (88%), Gaps = 13/295 (4%)
Frame = +3
Query: 30 AASASSLALSTFNPKSLPFSISRPASTPFLPPSLSFKLNHQSISLSVSA-----ASRFVR 194
AASASSLALS+FNPKSLPF +SRPAS L PSLSFKLN S+S S++A ASRF R
Sbjct: 2 AASASSLALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKWNSPASRFAR 61
Query: 195 NVAVTDDINVEEEDSLFSDDDAAPPPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESA 374
NVA+T + VEE+ D APP +EQSFSADLKLFVGNLPF+VDSAQLAQLFESA
Sbjct: 62 NVAITSEFEVEEDGFA----DVAPP---KEQSFSADLKLFVGNLPFNVDSAQLAQLFESA 114
Query: 375 GNVEMVEVIYDKVTGRSRSFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKRE 554
GNVEMVEVIYDK+TGRSR FGFVTMSSVSEVEAA QQFNGYELDGR LRVNAGPPPPKRE
Sbjct: 115 GNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRE 174
Query: 555 DSFSRGPRSSFGSSGSGYGGGGG-GAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEAR 731
D FSRGPRSSFGSSGSGYGGGGG GAGSGNRVYVGNLSWGVDDMALESLF EQGKV EAR
Sbjct: 175 DGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEAR 234
Query: 732 VIYDRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 896
VIYDRDSGRSKGFGFVTY+S+QEVQNAI++L+GADLDGRQIRVSEAEARPPRRQ+
Sbjct: 235 VIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
>gi|225440003|ref|XP_002281642.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 288
Score = 312 bits (797), Expect = 1e-082
Identities = 183/293 (62%), Positives = 214/293 (73%), Gaps = 13/293 (4%)
Frame = +3
Query: 36 SASSLALSTFN-PKSLPFSISRPASTPF--LPPSL-SFKLNHQSISLSVSAASRFVRNVA 203
SASSL L + + PK+L +IS+P S F LP S S KL+ SISLS S SR ++
Sbjct: 3 SASSLVLPSLSLPKTL--AISKPTSVSFFSLPFSCSSLKLHSNSISLSPS--SRGFLTLS 58
Query: 204 VTDDINVEEEDSLFSDDDAAPPPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNV 383
NV D+D + E SFS DLKLFVGNLPF+VDSA LA LFE AGNV
Sbjct: 59 SRFVRNVAVSSDYEQDEDVL--SDEGEPSFSPDLKLFVGNLPFNVDSAGLAGLFEQAGNV 116
Query: 384 EMVEVIYDKVTGRSRSFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDSF 563
EMVEVIYDK+TGRSR FGFVTMS+V EVEAA QQFNGYEL+GR LRVN+GPPP +RE+S
Sbjct: 117 EMVEVIYDKITGRSRGFGFVTMSTVEEVEAAAQQFNGYELEGRQLRVNSGPPPARRENSN 176
Query: 564 SRGPRSSFGSSGSGYGGGGGGA--GSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVI 737
RG S+F + + G GGA S NR+YVGNLSWGVDD+ALE+LF EQGKV EARVI
Sbjct: 177 FRGENSNFRGENTNFRGPRGGANLNSTNRIYVGNLSWGVDDLALETLFSEQGKVTEARVI 236
Query: 738 YDRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 896
YDR++GRS+GFGFVTYNSA+EV AI +L+G DL+GR IRV+ AEAR PRRQF
Sbjct: 237 YDRETGRSRGFGFVTYNSAEEVNRAIESLDGVDLNGRSIRVTMAEAR-PRRQF 288
>gi|1350820|sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein,
chloroplastic; AltName: Full=CP-RBP30; Flags: Precursor
Length = 279
Score = 295 bits (755), Expect = 9e-078
Identities = 172/286 (60%), Positives = 202/286 (70%), Gaps = 23/286 (8%)
Frame = +3
Query: 45 SLALSTFNPKS--LPFSISRPASTPF--LPPSLSFKLNHQSISLSVSAASRFVRNVAVTD 212
SL + P++ LP S+ S F LPPS LN S S +SRFVR V + D
Sbjct: 7 SLHFLSLTPQTLLLPKPTSQTTSLSFFSLPPS---SLNLSLSSPSSCFSSRFVRKVTLPD 63
Query: 213 DINVEEEDSLFSDDDAAPPPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEMV 392
+E+ + D D ++E++FS DLK+FVGNL F DSA LA+LFE AGNVEMV
Sbjct: 64 FDQIEDVE----DGDEG---VEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMV 116
Query: 393 EVIYDKVTGRSRSFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDSFSRG 572
EVIYDK+TGRSR FGFVTMSS EVEAA QQFNGYELDGRALRVN+GPPP KRE+
Sbjct: 117 EVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKREN----- 171
Query: 573 PRSSFGSSGSGYGG--GGGGAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDR 746
SSF + S GG GGG S NRVYVGNL+WGVD ALE+LF EQGKV +A+V+YDR
Sbjct: 172 --SSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDR 229
Query: 747 DSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPP 884
DSGRS+GFGFVTY+SA+EV NAI +L+G DL+GR IRVS AEARPP
Sbjct: 230 DSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPP 275
>gi|224069480|ref|XP_002326357.1| predicted protein [Populus trichocarpa]
Length = 286
Score = 293 bits (748), Expect = 6e-077
Identities = 166/286 (58%), Positives = 200/286 (69%), Gaps = 6/286 (2%)
Frame = +3
Query: 36 SASSLALSTFN-PKSLPFSISRPASTPFLPPSLSFKLNHQSISLSVSAASRFVRNVAVTD 212
SASSL L + N P ++ S+P S FL S + + S+ LS + +
Sbjct: 5 SASSLVLPSLNHPNTIKSFYSKPTSLSFLSLSSTSSIKPASLFLSFQQKQQQPLSSRFLK 64
Query: 213 DINVEEEDSLFSDDDAAPPPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEMV 392
+ + E ++D E SFS DL+LFVGNLPF+V+SAQLA LF+SAGNVEMV
Sbjct: 65 SVAISSE--FGQEEDVF--GDGDEPSFSPDLQLFVGNLPFNVNSAQLADLFKSAGNVEMV 120
Query: 393 EVIYDKVTGRSRSFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDSFSRG 572
EV YDKVTGRSR FGFVTMS++ EVEAA QQFNGYELDGR LRVN+G PPP+RE SFSR
Sbjct: 121 EVKYDKVTGRSRGFGFVTMSTIEEVEAASQQFNGYELDGRPLRVNSG-PPPQRETSFSRL 179
Query: 573 PRSSFGSSGSGYGGGGGGAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDS 752
P+ S GG S NRVYVGNLSW VDD ALESLF E+GKV +A+V+YDRDS
Sbjct: 180 PQRENSFSRGPGARGGETFDSSNRVYVGNLSWNVDDSALESLFREKGKVMDAKVVYDRDS 239
Query: 753 GRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRR 890
GRSKGFGFVTY+SA+EV++A+ +LNGA+LDGR IRVS AEA+P RR
Sbjct: 240 GRSKGFGFVTYSSAEEVEDAVDSLNGAELDGRAIRVSVAEAKPRRR 285
>gi|1350821|sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucleoprotein,
chloroplastic; AltName: Full=CP-RBP31; Flags: Precursor
Length = 292
Score = 290 bits (741), Expect = 4e-076
Identities = 172/291 (59%), Positives = 198/291 (68%), Gaps = 29/291 (9%)
Frame = +3
Query: 57 STFNPKSLPFSISRPASTPFLPPSLSFKLNHQSISLSVSA---ASRFVRNVAVTDDINVE 227
S+ P S S P+S SL+ L+ SI S S S F VA++D
Sbjct: 20 SSLKPNSTLSFFSLPSS------SLNLSLSSSSIGHSASIKPFESSFSTRVALSD----- 68
Query: 228 EEDSLFSDDDAAPPPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEMVEVIYD 407
D L D + A P FS DLKLFVGNLPF VDSA LA LFE AGNVE+VEVIYD
Sbjct: 69 -FDQLEDDVEVAEQP-----RFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYD 122
Query: 408 KVTGRSRSFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDSF---SRGPR 578
K++GRSR FGFVTMS+ EVEAAEQQFNGYE+DGRA+RVNAGP P KRE+S RG
Sbjct: 123 KLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGN 182
Query: 579 SSFG---SSGSGYGG--GGGGAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYD 743
SS+G S +GG GG S NRVYVGNLSWGVDD+AL+ LF EQG V +A+V+YD
Sbjct: 183 SSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYD 242
Query: 744 RDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 896
RDSGRS+GFGFVTY+SA+EV +AI +LNG DLDGR IRVS AE R PRRQF
Sbjct: 243 RDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER-PRRQF 292
>gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A,
chloroplastic; AltName: Full=CP29A; Flags: Precursor
Length = 273
Score = 289 bits (737), Expect = 1e-075
Identities = 166/277 (59%), Positives = 196/277 (70%), Gaps = 25/277 (9%)
Frame = +3
Query: 45 SLALSTFNPKSLPF--SISRPASTPF--LPPSLSFKLNHQSISLSVSAASRFVRNVAVTD 212
SL + P++LP S+ S F LPPS LN S S +SRFVR V ++D
Sbjct: 7 SLHFLSLTPQTLPLPKPTSQTTSLSFFSLPPS---SLNLSLSSSSSCFSSRFVRKVTLSD 63
Query: 213 DINVEEEDSLFSDDDAAPPPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEMV 392
+E+ + DD ++E++FS DLK+FVGNLPF DSA LA+LFE AGNVEMV
Sbjct: 64 FDQIEDVED--GDDGV-----EEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMV 116
Query: 393 EVIYDKVTGRSRSFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDSFSRG 572
EVIYDK+TGRSR FGFVTMSS EVEAA QQFNGYELDGRALRVN+GPPP KRE+S RG
Sbjct: 117 EVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRG 176
Query: 573 PRSSFGSSGSGYGGGGGGAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDS 752
GS GGG S NRVYVGNL+WGVD ALE+LF EQGKV +A+V+YDRDS
Sbjct: 177 -----GSR------GGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDS 225
Query: 753 GRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVS 863
GRS+GFGFVTY+SA+EV NAI +L+G DL+GR IRVS
Sbjct: 226 GRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 262
>gi|255639723|gb|ACU20155.1| unknown [Glycine max]
Length = 279
Score = 280 bits (716), Expect = 3e-073
Identities = 166/281 (59%), Positives = 201/281 (71%), Gaps = 34/281 (12%)
Frame = +3
Query: 39 ASSLALSTFNPKSLPFSISRPASTPFLPPSLSFKLNHQSISLSVSAASRFVRNVAVTDDI 218
+SSL+L+ P S P SI S FL +L S S +S +SRFV +V+V
Sbjct: 28 SSSLSLT---PNSKPISI----SAVFLKTTL-------SSSSPLSLSSRFVPHVSV---- 69
Query: 219 NVEEEDSLFSDDDAAPPPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEMVEV 398
+E+E+ F D D SFS DLKLFVGNLPF VDSA+LA+LFESAGNVE+VEV
Sbjct: 70 -LEQEEDTFGDGDG--------PSFSRDLKLFVGNLPFSVDSARLAELFESAGNVEVVEV 120
Query: 399 IYDKVTGRSRSFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDSFSRGPR 578
IYDK TGRSR FGFVTMSSV E EAA +QFNGYELDGR+LRVN+GPPP + E +
Sbjct: 121 IYDKTTGRSRGFGFVTMSSVEEAEAAAKQFNGYELDGRSLRVNSGPPPARNESAPRFRGG 180
Query: 579 SSFGSSGSGYGGGGGGAGSGNRVYVGNLSWGVDDMALESLFGEQG-KVAEARVIYDRDSG 755
SSFGS GGG + S NRV+VGNL+WGVDD+ALESLF EQG KV EARVIYDR+SG
Sbjct: 181 SSFGSR------GGGPSDSENRVHVGNLAWGVDDVALESLFREQGKKVLEARVIYDRESG 234
Query: 756 RSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEAR 878
RS+GFGFVT+ S EV++AI++L+G DL+GR IRVS A+++
Sbjct: 235 RSRGFGFVTFGSPDEVKSAIQSLDGVDLNGRAIRVSLADSK 275
>gi|681902|dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 334
Score = 215 bits (546), Expect = 2e-053
Identities = 130/212 (61%), Positives = 144/212 (67%), Gaps = 11/212 (5%)
Frame = +3
Query: 18 SSSMAASASSLALSTFNPKS---LPFSISRPASTPFLPPSLSFKLNHQSISLSVSAASRF 188
SS A + SL L P S LP S+S + L F + S SRF
Sbjct: 6 SSLSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVS--IFASSALKCSSPAEYPSRF 63
Query: 189 VRNVAVTDDINVEEEDSLFSDDDAAPPPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFE 368
VRNVAV+ D VEE+D DD+A P + SFS DLKLFVGNL F+VDSAQLAQLFE
Sbjct: 64 VRNVAVSSDFEVEEDDMFADGDDSA---PVERNSFSPDLKLFVGNLSFNVDSAQLAQLFE 120
Query: 369 SAGNVEMVEVIYDKVTGRSRSFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPK 548
SAGNVEMVEVIYDKVTGRSR FGFVTMS+ +EVEAA QQFNGYE +GR LRVNAGPPPPK
Sbjct: 121 SAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPK 180
Query: 549 REDSFSRGPRS-SFGSS-GSGYGG-GGGGAGS 635
RE+SFSRGPRS +GS G GYG GGG GS
Sbjct: 181 REESFSRGPRSGGYGSERGGGYGSERGGGYGS 212
Score = 171 bits (432), Expect = 3e-040
Identities = 86/107 (80%), Positives = 93/107 (86%), Gaps = 4/107 (3%)
Frame = +3
Query: 576 RSSFGSSGSGYGGGGGGAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDSG 755
RSS+GS G G G+GSGNR+YVGNLSWGVDDMALE+LF EQGKV EARVIYDRDSG
Sbjct: 232 RSSYGSG----SGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSG 287
Query: 756 RSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 896
RSKGFGFVT +S+QEVQ AI +LNGADLDGRQIRVSEAEARPPR QF
Sbjct: 288 RSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 334
>gi|15231817|ref|NP_190914.1| chloroplast RNA-binding protein 29 [Arabidopsis
thaliana]
Length = 342
Score = 215 bits (546), Expect = 2e-053
Identities = 130/212 (61%), Positives = 144/212 (67%), Gaps = 11/212 (5%)
Frame = +3
Query: 18 SSSMAASASSLALSTFNPKS---LPFSISRPASTPFLPPSLSFKLNHQSISLSVSAASRF 188
SS A + SL L P S LP S+S + L F + S SRF
Sbjct: 6 SSLSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVS--IFASSALKCSSPAEYPSRF 63
Query: 189 VRNVAVTDDINVEEEDSLFSDDDAAPPPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFE 368
VRNVAV+ D VEE+D DD+A P + SFS DLKLFVGNL F+VDSAQLAQLFE
Sbjct: 64 VRNVAVSSDFEVEEDDMFADGDDSA---PVERNSFSPDLKLFVGNLSFNVDSAQLAQLFE 120
Query: 369 SAGNVEMVEVIYDKVTGRSRSFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPK 548
SAGNVEMVEVIYDKVTGRSR FGFVTMS+ +EVEAA QQFNGYE +GR LRVNAGPPPPK
Sbjct: 121 SAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPK 180
Query: 549 REDSFSRGPRS-SFGSS-GSGYGG-GGGGAGS 635
RE+SFSRGPRS +GS G GYG GGG GS
Sbjct: 181 REESFSRGPRSGGYGSERGGGYGSERGGGYGS 212
Score = 171 bits (432), Expect = 3e-040
Identities = 86/107 (80%), Positives = 93/107 (86%), Gaps = 4/107 (3%)
Frame = +3
Query: 576 RSSFGSSGSGYGGGGGGAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDSG 755
RSS+GS G G G+GSGNR+YVGNLSWGVDDMALE+LF EQGKV EARVIYDRDSG
Sbjct: 240 RSSYGSG----SGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSG 295
Query: 756 RSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 896
RSKGFGFVT +S+QEVQ AI +LNGADLDGRQIRVSEAEARPPR QF
Sbjct: 296 RSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 342
>gi|681904|dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 326
Score = 213 bits (542), Expect = 5e-053
Identities = 115/155 (74%), Positives = 125/155 (80%), Gaps = 6/155 (3%)
Frame = +3
Query: 180 SRFVRNVAVTDDINVEEEDSLFSDDDAAPPPPQQEQSFSADLKLFVGNLPFDVDSAQLAQ 359
SRFVRNVAV+ D VEE+D DD+A P + SFS DLKLFVGNL F+VDSAQLAQ
Sbjct: 53 SRFVRNVAVSSDFEVEEDDMFADGDDSA---PVERNSFSPDLKLFVGNLSFNVDSAQLAQ 109
Query: 360 LFESAGNVEMVEVIYDKVTGRSRSFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPP 539
LFESAGNVEMVEVIYDKVTGRSR FGFVTMS+ +EVEAA QQFNGYE +GR LRVNAGPP
Sbjct: 110 LFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPP 169
Query: 540 PPKREDSFSRGPRS-SFGSS-GSGYGG-GGGGAGS 635
PPKRE+SFSRGPRS +GS G GYG GGG GS
Sbjct: 170 PPKREESFSRGPRSGGYGSERGGGYGSERGGGYGS 204
Score = 171 bits (432), Expect = 3e-040
Identities = 86/107 (80%), Positives = 93/107 (86%), Gaps = 4/107 (3%)
Frame = +3
Query: 576 RSSFGSSGSGYGGGGGGAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDSG 755
RSS+GS G G G+GSGNR+YVGNLSWGVDDMALE+LF EQGKV EARVIYDRDSG
Sbjct: 224 RSSYGSG----SGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSG 279
Query: 756 RSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 896
RSKGFGFVT +S+QEVQ AI +LNGADLDGRQIRVSEAEARPPR QF
Sbjct: 280 RSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 326
>gi|297820076|ref|XP_002877921.1| hypothetical protein ARALYDRAFT_348440
[Arabidopsis lyrata subsp. lyrata]
Length = 339
Score = 212 bits (539), Expect = 1e-052
Identities = 131/215 (60%), Positives = 148/215 (68%), Gaps = 15/215 (6%)
Frame = +3
Query: 27 MAASASSLALSTFNPKSL----PFSIS-RPASTPFLPPSLSFKLNHQSISLSVSAAS--- 182
M+ASASSL+ L P S+S P S F S S ++ S+ +
Sbjct: 1 MSASASSLSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHIVSLFASSAVKCSSPAEYP 60
Query: 183 -RFVRNVAVTDDINVEEEDSLFSDDDAAPPPPQQEQSFSADLKLFVGNLPFDVDSAQLAQ 359
RFVRNVAV+ D VEE+D DD+A P + SFS DLKLFVGNL F+VDSAQLAQ
Sbjct: 61 LRFVRNVAVSSDFEVEEDDMFADGDDSA---PVERNSFSPDLKLFVGNLSFNVDSAQLAQ 117
Query: 360 LFESAGNVEMVEVIYDKVTGRSRSFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPP 539
LFESAGNVEMVEVIYDKVTGRSR FGFVTMS+ +EVEAA QQFNGYE +GR LRVNAGPP
Sbjct: 118 LFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPP 177
Query: 540 PPKREDSFSRGPRS-SFGSS-GSGYGG-GGGGAGS 635
PPKRE+SFSRGPRS +GS G GYG GGG GS
Sbjct: 178 PPKREESFSRGPRSGGYGSERGGGYGSERGGGYGS 212
Score = 172 bits (435), Expect = 1e-040
Identities = 87/117 (74%), Positives = 96/117 (82%), Gaps = 6/117 (5%)
Frame = +3
Query: 546 KREDSFSRGPRSSFGSSGSGYGGGGGGAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAE 725
+R + RSS+GS G G G+GSGNR+YVGNLSWGVDDMALE+LF EQGKV E
Sbjct: 229 QRSGGYGGSQRSSYGS------GSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVE 282
Query: 726 ARVIYDRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 896
ARVIYDRDSGRSKGFGFVT +S+QEVQ AI +LNGADLDGRQIRVSEAEARPPR QF
Sbjct: 283 ARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 339
>gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative
[Ricinus communis]
Length = 280
Score = 190 bits (480), Expect = 7e-046
Identities = 116/199 (58%), Positives = 132/199 (66%), Gaps = 21/199 (10%)
Frame = +3
Query: 33 ASASSLALSTFNPKSLPFSISRPASTPFLPPSLSFKLNHQSISLSVSAASRFV------- 191
ASASSL L + NPK+L P P SLSFKL+ + IS+ S S FV
Sbjct: 4 ASASSLVLPSLNPKTLSL------CNPNKPISLSFKLHAKPISIPSSLFSSFVPLQQQPY 57
Query: 192 -RNVAVTDDINVEEEDSLFSDDDAAPPPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFE 368
+ + + E ++D + E SFS DLKLFVGNLPF+VDSAQLA LFE
Sbjct: 58 SSSSRFVPSVAISSE--FGQEEDVS--SDGDESSFSQDLKLFVGNLPFNVDSAQLAGLFE 113
Query: 369 SAGNVEMVEVIYDKVTGRSRSFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPK 548
SAGNVEMVEVIYDKVTGRSR FGFVTMSS+ EVEAA QQFNGYEL+GRALRVN+G PPP+
Sbjct: 114 SAGNVEMVEVIYDKVTGRSRGFGFVTMSSIDEVEAAAQQFNGYELEGRALRVNSG-PPPQ 172
Query: 549 REDSFSRGPRSSFGSSGSG 605
RE SFSR PR FG G G
Sbjct: 173 RESSFSRSPR--FGGGGGG 189
>gi|224140195|ref|XP_002323470.1| predicted protein [Populus trichocarpa]
Length = 273
Score = 175 bits (443), Expect = 1e-041
Identities = 108/196 (55%), Positives = 128/196 (65%), Gaps = 9/196 (4%)
Frame = +3
Query: 36 SASSLALSTFN-PKSLPFSISRPASTPFLPPSLSFKLNHQSISLSVSAASRFVRNVAVTD 212
SASSL L + N P ++ S+P S FL PS + L S+ LS + + + +
Sbjct: 5 SASSLVLPSLNHPNTIKSFYSKPNSLFFLSPSSTSSLKPVSLLLSFQHQQQPLSSRFLK- 63
Query: 213 DINVEEEDSLFSDDDAAPPPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEMV 392
NV ++D EQSFS DLKLFVGNLPF+VDSA+LA LFE+AGNVEMV
Sbjct: 64 --NVAISSEFGQEEDFL--SDGDEQSFSQDLKLFVGNLPFNVDSARLAGLFETAGNVEMV 119
Query: 393 EVIYDKVTGRSRSFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDSFSRG 572
EVIYDKVTGRSR FGFVTM+++ EVEAA +QFNGYELDGR LRVN GPPP K E SFSRG
Sbjct: 120 EVIYDKVTGRSRGFGFVTMTTIEEVEAASKQFNGYELDGRTLRVNFGPPPQK-ESSFSRG 178
Query: 573 PR--SSFGSSGSGYGG 614
PR +F S Y G
Sbjct: 179 PRGGETFDSGNRVYVG 194
>gi|334185950|ref|NP_001190079.1| chloroplast RNA-binding protein 29
[Arabidopsis thaliana]
Length = 363
Score = 171 bits (432), Expect = 3e-040
Identities = 86/107 (80%), Positives = 93/107 (86%), Gaps = 4/107 (3%)
Frame = +3
Query: 576 RSSFGSSGSGYGGGGGGAGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDSG 755
RSS+GS G G G+GSGNR+YVGNLSWGVDDMALE+LF EQGKV EARVIYDRDSG
Sbjct: 261 RSSYGSG----SGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSG 316
Query: 756 RSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 896
RSKGFGFVT +S+QEVQ AI +LNGADLDGRQIRVSEAEARPPR QF
Sbjct: 317 RSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 363
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,061,447,628,928
Number of Sequences: 15229318
Number of Extensions: 3061447628928
Number of Successful Extensions: 717782310
Number of sequences better than 0.0: 0
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