BLASTX 7.6.2
Query= UN25978 /QuerySize=1214
(1213 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT... 481 2e-133
gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabido... 473 2e-131
gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thal... 472 7e-131
gi|225440003|ref|XP_002281642.1| PREDICTED: hypothetical protein... 340 4e-091
gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast,... 330 3e-088
gi|224069480|ref|XP_002326357.1| predicted protein [Populus tric... 318 1e-084
gi|224140195|ref|XP_002323470.1| predicted protein [Populus tric... 312 1e-082
gi|17432522|gb|AAL39067.1|AF389431_1 single-stranded DNA binding... 311 2e-082
gi|1350820|sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucle... 310 3e-082
gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucl... 302 8e-080
gi|1350821|sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucle... 295 1e-077
gi|255639723|gb|ACU20155.1| unknown [Glycine max] 282 1e-073
gi|681902|dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis ... 220 4e-055
gi|15231817|ref|NP_190914.1| chloroplast RNA-binding protein 29 ... 220 4e-055
gi|297820076|ref|XP_002877921.1| hypothetical protein ARALYDRAFT... 218 2e-054
gi|681904|dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis ... 217 3e-054
>gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714
[Arabidopsis lyrata subsp. lyrata]
Length = 289
Score = 481 bits (1236), Expect = 2e-133
Identities = 250/292 (85%), Positives = 266/292 (91%), Gaps = 9/292 (3%)
Frame = -3
Query: 1172 MAASASSLALSTFNPKSLPFSISKPASIPFLPPSLSFKLNHQSISLSVSA-----ASRFV 1008
MAASASSLALS+FNPKSLPF +S+PAS+ LPPSLSFKLN S+S S++A ASRFV
Sbjct: 1 MAASASSLALSSFNPKSLPFCVSRPASVSLLPPSLSFKLNSDSVSFSIAAKWNSPASRFV 60
Query: 1007 RNVAVTDDFSVEEEDGVFSDDSPSQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNV 828
RNVA+T +F VEE+ F+DD+ QQ QSFSADLKLFVGNLPF+VDSAQLAQLFESAGNV
Sbjct: 61 RNVAITSEFEVEEDG--FADDAAPQQ-QSFSADLKLFVGNLPFNVDSAQLAQLFESAGNV 117
Query: 827 EMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRALRVNAGPPPPKREDSF 648
EMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAA QFNGYELDGR LRVNAGPPPPKRED F
Sbjct: 118 EMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAANQFNGYELDGRPLRVNAGPPPPKREDGF 177
Query: 647 SRGPRSSFGSSGSGYGGGGG-GSGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIY 471
SRGPRSSFGSSGSGYGGGGG G+GSGNRVYVGNLSWGVDDMALESLF EQGKV EARVIY
Sbjct: 178 SRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFAEQGKVVEARVIY 237
Query: 470 DRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 315
DRDSGRSKGFGFVTYNS+QEVQNAI +LNGADLDGRQIRVSEAEARPPRRQF
Sbjct: 238 DRDSGRSKGFGFVTYNSSQEVQNAINSLNGADLDGRQIRVSEAEARPPRRQF 289
>gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 289
Score = 473 bits (1217), Expect = 2e-131
Identities = 245/292 (83%), Positives = 267/292 (91%), Gaps = 9/292 (3%)
Frame = -3
Query: 1172 MAASASSLALSTFNPKSLPFSISKPASIPFLPPSLSFKLNHQSISLSVSA-----ASRFV 1008
MAASASSLALS+FNPKSLPF +S+PAS+ L PSLSFKLN S+S S++A ASRFV
Sbjct: 1 MAASASSLALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKWNSPASRFV 60
Query: 1007 RNVAVTDDFSVEEEDGVFSDDSPSQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNV 828
RNVA+T +F VEE+ F+D +P +EQSFSADLKLFVGNLPF+VDSAQLAQLFESAGNV
Sbjct: 61 RNVAITSEFEVEEDG--FADVAP-PKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNV 117
Query: 827 EMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRALRVNAGPPPPKREDSF 648
EMVEVIYDK+TGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGR LRVNAGPPPPKRED F
Sbjct: 118 EMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGF 177
Query: 647 SRGPRSSFGSSGSGYGGGGG-GSGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIY 471
SRGPRSSFGSSGSGYGGGGG G+GSGNRVYVGNLSWGVDDMALESLF EQGKV EARVIY
Sbjct: 178 SRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIY 237
Query: 470 DRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 315
DRDSGRSKGFGFVTY+S+QEVQNAI++L+GADLDGRQIRVSEAEARPPRRQ+
Sbjct: 238 DRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
>gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thaliana]
Length = 289
Score = 472 bits (1213), Expect = 7e-131
Identities = 244/292 (83%), Positives = 266/292 (91%), Gaps = 9/292 (3%)
Frame = -3
Query: 1172 MAASASSLALSTFNPKSLPFSISKPASIPFLPPSLSFKLNHQSISLSVSA-----ASRFV 1008
MAASASSLALS+FNPKSLPF +S+PAS+ L PSLSFKLN S+S S++A ASRF
Sbjct: 1 MAASASSLALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKWNSPASRFA 60
Query: 1007 RNVAVTDDFSVEEEDGVFSDDSPSQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNV 828
RNVA+T +F VEE+ F+D +P +EQSFSADLKLFVGNLPF+VDSAQLAQLFESAGNV
Sbjct: 61 RNVAITSEFEVEEDG--FADVAP-PKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNV 117
Query: 827 EMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRALRVNAGPPPPKREDSF 648
EMVEVIYDK+TGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGR LRVNAGPPPPKRED F
Sbjct: 118 EMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGF 177
Query: 647 SRGPRSSFGSSGSGYGGGGG-GSGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIY 471
SRGPRSSFGSSGSGYGGGGG G+GSGNRVYVGNLSWGVDDMALESLF EQGKV EARVIY
Sbjct: 178 SRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIY 237
Query: 470 DRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 315
DRDSGRSKGFGFVTY+S+QEVQNAI++L+GADLDGRQIRVSEAEARPPRRQ+
Sbjct: 238 DRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
>gi|225440003|ref|XP_002281642.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 288
Score = 340 bits (870), Expect = 4e-091
Identities = 194/296 (65%), Positives = 229/296 (77%), Gaps = 21/296 (7%)
Frame = -3
Query: 1166 ASASSLALSTFN-PKSLPFSISKPASIPF--LPPSL-SFKLNHQSISLSVSA------AS 1017
ASASSL L + + PK+L +ISKP S+ F LP S S KL+ SISLS S+ +S
Sbjct: 2 ASASSLVLPSLSLPKTL--AISKPTSVSFFSLPFSCSSLKLHSNSISLSPSSRGFLTLSS 59
Query: 1016 RFVRNVAVTDDFSVEEEDGVFSDDSPSQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESA 837
RFVRNVAV+ D+ E+++ V SD+ E SFS DLKLFVGNLPF+VDSA LA LFE A
Sbjct: 60 RFVRNVAVSSDY--EQDEDVLSDEG----EPSFSPDLKLFVGNLPFNVDSAGLAGLFEQA 113
Query: 836 GNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRALRVNAGPPPPKRE 657
GNVEMVEVIYDK+TGRSRGFGFVTMS+V EVEAAAQQFNGYEL+GR LRVN+GPPP +RE
Sbjct: 114 GNVEMVEVIYDKITGRSRGFGFVTMSTVEEVEAAAQQFNGYELEGRQLRVNSGPPPARRE 173
Query: 656 DSFSRGPRSSFGSSGSGYGG--GGGGSGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEA 483
+S RG S+F + + G GG S NR+YVGNLSWGVDD+ALE+LF EQGKV EA
Sbjct: 174 NSNFRGENSNFRGENTNFRGPRGGANLNSTNRIYVGNLSWGVDDLALETLFSEQGKVTEA 233
Query: 482 RVIYDRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 315
RVIYDR++GRS+GFGFVTYNSA+EV AI +L+G DL+GR IRV+ AEAR PRRQF
Sbjct: 234 RVIYDRETGRSRGFGFVTYNSAEEVNRAIESLDGVDLNGRSIRVTMAEAR-PRRQF 288
>gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative
[Ricinus communis]
Length = 280
Score = 330 bits (846), Expect = 3e-088
Identities = 187/290 (64%), Positives = 217/290 (74%), Gaps = 34/290 (11%)
Frame = -3
Query: 1166 ASASSLALSTFNPKSLPFSISKPASIPFLPPSLSFKLNHQSISL--------------SV 1029
ASASSL L + NPK+L S+ P P SLSFKL+ + IS+
Sbjct: 4 ASASSLVLPSLNPKTL--SLCNPNK----PISLSFKLHAKPISIPSSLFSSFVPLQQQPY 57
Query: 1028 SAASRFVRNVAVTDDFSVEEEDGVFSDDSPSQQEQSFSADLKLFVGNLPFDVDSAQLAQL 849
S++SRFV +VA++ +F EE D S E SFS DLKLFVGNLPF+VDSAQLA L
Sbjct: 58 SSSSRFVPSVAISSEFGQEE------DVSSDGDESSFSQDLKLFVGNLPFNVDSAQLAGL 111
Query: 848 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRALRVNAGPPP 669
FESAGNVEMVEVIYDKVTGRSRGFGFVTMSS+ EVEAAAQQFNGYEL+GRALRVN+G PP
Sbjct: 112 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSSIDEVEAAAQQFNGYELEGRALRVNSG-PP 170
Query: 668 PKREDSFSRGPRSSFGSSGSGYGGGGGGSGSGNRVYVGNLSWGVDDMALESLFGEQGKVA 489
P+RE SFSR PR G GGGGG S GNR+YVGNLSW VD++ALES F EQGKV
Sbjct: 171 PQRESSFSRSPR-------FGGGGGGGESLEGNRLYVGNLSWSVDNLALESFFSEQGKVV 223
Query: 488 EARVIYDRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAE 339
+A+V+YDR+SGRS+GFGFVTY+SA+EV+NAI +LNGA+LDGR IRVS AE
Sbjct: 224 DAKVVYDRESGRSRGFGFVTYSSAEEVENAIDSLNGAELDGRAIRVSVAE 273
>gi|224069480|ref|XP_002326357.1| predicted protein [Populus trichocarpa]
Length = 286
Score = 318 bits (814), Expect = 1e-084
Identities = 178/290 (61%), Positives = 215/290 (74%), Gaps = 14/290 (4%)
Frame = -3
Query: 1169 AASASSLALSTFN-PKSLPFSISKPASIPFLPPSLSFKLNHQSISLSVS------AASRF 1011
A SASSL L + N P ++ SKP S+ FL S + + S+ LS +SRF
Sbjct: 3 ATSASSLVLPSLNHPNTIKSFYSKPTSLSFLSLSSTSSIKPASLFLSFQQKQQQPLSSRF 62
Query: 1010 VRNVAVTDDFSVEEEDGVFSDDSPSQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGN 831
+++VA++ +F EE+ VF D E SFS DL+LFVGNLPF+V+SAQLA LF+SAGN
Sbjct: 63 LKSVAISSEFGQEED--VFGDG----DEPSFSPDLQLFVGNLPFNVNSAQLADLFKSAGN 116
Query: 830 VEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRALRVNAGPPPPKREDS 651
VEMVEV YDKVTGRSRGFGFVTMS++ EVEAA+QQFNGYELDGR LRVN+G PPP+RE S
Sbjct: 117 VEMVEVKYDKVTGRSRGFGFVTMSTIEEVEAASQQFNGYELDGRPLRVNSG-PPPQRETS 175
Query: 650 FSRGPRSSFGSSGSGYGGGGGGSGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIY 471
FSR P+ S GG S NRVYVGNLSW VDD ALESLF E+GKV +A+V+Y
Sbjct: 176 FSRLPQRENSFSRGPGARGGETFDSSNRVYVGNLSWNVDDSALESLFREKGKVMDAKVVY 235
Query: 470 DRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRR 321
DRDSGRSKGFGFVTY+SA+EV++A+ +LNGA+LDGR IRVS AEA+P RR
Sbjct: 236 DRDSGRSKGFGFVTYSSAEEVEDAVDSLNGAELDGRAIRVSVAEAKPRRR 285
>gi|224140195|ref|XP_002323470.1| predicted protein [Populus trichocarpa]
Length = 273
Score = 312 bits (797), Expect = 1e-082
Identities = 174/278 (62%), Positives = 208/278 (74%), Gaps = 25/278 (8%)
Frame = -3
Query: 1169 AASASSLALSTFN-PKSLPFSISKPASIPFLPPSLSFKLNHQSISLSVS-----AASRFV 1008
AASASSL L + N P ++ SKP S+ FL PS + L S+ LS +SRF+
Sbjct: 3 AASASSLVLPSLNHPNTIKSFYSKPNSLFFLSPSSTSSLKPVSLLLSFQHQQQPLSSRFL 62
Query: 1007 RNVAVTDDFSVEEEDGVFSDDSPSQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNV 828
+NVA++ +F EE+ F D EQSFS DLKLFVGNLPF+VDSA+LA LFE+AGNV
Sbjct: 63 KNVAISSEFGQEED---FLSDG---DEQSFSQDLKLFVGNLPFNVDSARLAGLFETAGNV 116
Query: 827 EMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRALRVNAGPPPPKREDSF 648
EMVEVIYDKVTGRSRGFGFVTM+++ EVEAA++QFNGYELDGR LRVN GPPP K E SF
Sbjct: 117 EMVEVIYDKVTGRSRGFGFVTMTTIEEVEAASKQFNGYELDGRTLRVNFGPPPQK-ESSF 175
Query: 647 SRGPRSSFGSSGSGYGGGGGGSGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYD 468
SRGPR GG SGNRVYVGNLSW VD++ALE+LF E+G+V +A+V+YD
Sbjct: 176 SRGPR------------GGETFDSGNRVYVGNLSWNVDNLALETLFREKGRVMDAKVVYD 223
Query: 467 RDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIR 354
RDSGRS+GFGFVTY+SA+EV NAI +LNGA+LDGR IR
Sbjct: 224 RDSGRSRGFGFVTYSSAEEVDNAIDSLNGAELDGRAIR 261
>gi|17432522|gb|AAL39067.1|AF389431_1 single-stranded DNA binding protein
precursor [Solanum tuberosum]
Length = 289
Score = 311 bits (796), Expect = 2e-082
Identities = 174/292 (59%), Positives = 212/292 (72%), Gaps = 21/292 (7%)
Frame = -3
Query: 1172 MAASASSLALSTFNPKSLPFSISKPASIPF--LPP-SLSFKLNHQSISLSVSAASRFVRN 1002
MA+S+SSL + P++LP S+ SI F LPP SL+ L+ S + +SRFVR
Sbjct: 1 MASSSSSLHFLSLTPQTLPKPTSQTTSISFFSLPPSSLNLSLSSSSTPRNFE-SSRFVRK 59
Query: 1001 VAVTDDFSVE--------EEDGVFSDDSPSQQEQSFSADLKLFVGNLPFDVDSAQLAQLF 846
V ++D +E EE+G SD+ S +E++ + DLK+FVGNLPF VDSA LA+LF
Sbjct: 60 VTLSDFDQIEEVEAGDDDEEEGGLSDEGASYEERNANPDLKIFVGNLPFSVDSAALAELF 119
Query: 845 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRALRVNAGPPPP 666
E AG+VEMVEVIYDK+TGRSRGFGFVTMSS VEAA QQFNGYE+DGRALRVN+GP PP
Sbjct: 120 ERAGDVEMVEVIYDKLTGRSRGFGFVTMSSKEAVEAACQQFNGYEIDGRALRVNSGPAPP 179
Query: 665 KREDSFSRGPRSSFGSSGSGYGGGGGGS-GSGNRVYVGNLSWGVDDMALESLFGEQGKVA 489
KRE +SFG + S GG GGGS S NRVYVGNL+W VD LE+LF EQGKV
Sbjct: 180 KRE--------NSFGDNSSYQGGRGGGSMDSSNRVYVGNLAWSVDQQQLETLFSEQGKVV 231
Query: 488 EARVIYDRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEAR 333
+A+V+YDRDSGRS+GFGFVTY+SA+EV +AI +L+G DL GR IRVS AEAR
Sbjct: 232 DAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIESLDGVDLGGRAIRVSPAEAR 283
>gi|1350820|sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein,
chloroplastic; AltName: Full=CP-RBP30; Flags: Precursor
Length = 279
Score = 310 bits (794), Expect = 3e-082
Identities = 178/287 (62%), Positives = 209/287 (72%), Gaps = 21/287 (7%)
Frame = -3
Query: 1166 ASASSLALSTFNPKS--LPFSISKPASIPF--LPPSLSFKLNHQSISLSVSAASRFVRNV 999
+SASSL + P++ LP S+ S+ F LPPS LN S S +SRFVR V
Sbjct: 3 SSASSLHFLSLTPQTLLLPKPTSQTTSLSFFSLPPS---SLNLSLSSPSSCFSSRFVRKV 59
Query: 998 AVTDDFSVEE-EDGVFSDDSPSQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEM 822
+ D +E+ EDG D ++E++FS DLK+FVGNL F DSA LA+LFE AGNVEM
Sbjct: 60 TLPDFDQIEDVEDG----DEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEM 115
Query: 821 VEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRALRVNAGPPPPKREDSFSR 642
VEVIYDK+TGRSRGFGFVTMSS EVEAA QQFNGYELDGRALRVN+GPPP KRE+
Sbjct: 116 VEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKREN---- 171
Query: 641 GPRSSFGSSGSGYGG--GGGGSGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYD 468
SSF + S GG GGG S NRVYVGNL+WGVD ALE+LF EQGKV +A+V+YD
Sbjct: 172 ---SSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYD 228
Query: 467 RDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPP 327
RDSGRS+GFGFVTY+SA+EV NAI +L+G DL+GR IRVS AEARPP
Sbjct: 229 RDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPP 275
>gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A,
chloroplastic; AltName: Full=CP29A; Flags: Precursor
Length = 273
Score = 302 bits (773), Expect = 8e-080
Identities = 172/278 (61%), Positives = 203/278 (73%), Gaps = 23/278 (8%)
Frame = -3
Query: 1166 ASASSLALSTFNPKSLPF--SISKPASIPF--LPPSLSFKLNHQSISLSVSAASRFVRNV 999
+SASSL + P++LP S+ S+ F LPPS LN S S +SRFVR V
Sbjct: 3 SSASSLHFLSLTPQTLPLPKPTSQTTSLSFFSLPPS---SLNLSLSSSSSCFSSRFVRKV 59
Query: 998 AVTDDFSVEE-EDGVFSDDSPSQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEM 822
++D +E+ EDG D ++E++FS DLK+FVGNLPF DSA LA+LFE AGNVEM
Sbjct: 60 TLSDFDQIEDVEDG----DDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEM 115
Query: 821 VEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRALRVNAGPPPPKREDSFSR 642
VEVIYDK+TGRSRGFGFVTMSS EVEAA QQFNGYELDGRALRVN+GPPP KRE+S R
Sbjct: 116 VEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFR 175
Query: 641 GPRSSFGSSGSGYGGGGGGSGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRD 462
G GS GGG S NRVYVGNL+WGVD ALE+LF EQGKV +A+V+YDRD
Sbjct: 176 G-----GSR------GGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRD 224
Query: 461 SGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVS 348
SGRS+GFGFVTY+SA+EV NAI +L+G DL+GR IRVS
Sbjct: 225 SGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVS 262
>gi|1350821|sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucleoprotein,
chloroplastic; AltName: Full=CP-RBP31; Flags: Precursor
Length = 292
Score = 295 bits (754), Expect = 1e-077
Identities = 172/299 (57%), Positives = 205/299 (68%), Gaps = 22/299 (7%)
Frame = -3
Query: 1169 AASASSLALSTFNPKSLPFSISKPASIPFLP-PSLSFKLNHQSISLSVSAA-----SRFV 1008
A+S+ S F P S+ +++ F PS S L+ S S+ SA+ S F
Sbjct: 2 ASSSVSSLQFLFVTSQTPSSLKPNSTLSFFSLPSSSLNLSLSSSSIGHSASIKPFESSFS 61
Query: 1007 RNVAVTDDFSVEEEDGVFSDDSPSQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNV 828
VA++D +E DD ++ FS DLKLFVGNLPF VDSA LA LFE AGNV
Sbjct: 62 TRVALSDFDQLE-------DDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNV 114
Query: 827 EMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRALRVNAGPPPPKREDSF 648
E+VEVIYDK++GRSRGFGFVTMS+ EVEAA QQFNGYE+DGRA+RVNAGP P KRE+S
Sbjct: 115 EIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSS 174
Query: 647 ---SRGPRSSFG---SSGSGYGGGGGGSG--SGNRVYVGNLSWGVDDMALESLFGEQGKV 492
RG SS+G S +GG GG S NRVYVGNLSWGVDD+AL+ LF EQG V
Sbjct: 175 FGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNV 234
Query: 491 AEARVIYDRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 315
+A+V+YDRDSGRS+GFGFVTY+SA+EV +AI +LNG DLDGR IRVS AE R PRRQF
Sbjct: 235 VDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER-PRRQF 292
>gi|255639723|gb|ACU20155.1| unknown [Glycine max]
Length = 279
Score = 282 bits (719), Expect = 1e-073
Identities = 166/288 (57%), Positives = 203/288 (70%), Gaps = 21/288 (7%)
Frame = -3
Query: 1172 MAASASSLALSTF-----NPKSLPFSISKPASIPFLPPSLSFKLNHQSISLSVSAASRFV 1008
M+ SA+SLAL T P P S +S+ P S ++ + ++S++S
Sbjct: 1 MSTSAASLALPTLTLRTRQPLCSPQCFS--SSLSLTPNSKPISISAVFLKTTLSSSSPLS 58
Query: 1007 RNVAVTDDFSV-EEEDGVFSD-DSPSQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAG 834
+ SV E+E+ F D D P SFS DLKLFVGNLPF VDSA+LA+LFESAG
Sbjct: 59 LSSRFVPHVSVLEQEEDTFGDGDGP-----SFSRDLKLFVGNLPFSVDSARLAELFESAG 113
Query: 833 NVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRALRVNAGPPPPKRED 654
NVE+VEVIYDK TGRSRGFGFVTMSSV E EAAA+QFNGYELDGR+LRVN+GPPP + E
Sbjct: 114 NVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAKQFNGYELDGRSLRVNSGPPPARNES 173
Query: 653 SFSRGPRSSFGSSGSGYGGGGGGSGSGNRVYVGNLSWGVDDMALESLFGEQG-KVAEARV 477
+ SSFGS GGG S S NRV+VGNL+WGVDD+ALESLF EQG KV EARV
Sbjct: 174 APRFRGGSSFGSR------GGGPSDSENRVHVGNLAWGVDDVALESLFREQGKKVLEARV 227
Query: 476 IYDRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEAR 333
IYDR+SGRS+GFGFVT+ S EV++AI++L+G DL+GR IRVS A+++
Sbjct: 228 IYDRESGRSRGFGFVTFGSPDEVKSAIQSLDGVDLNGRAIRVSLADSK 275
>gi|681902|dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 334
Score = 220 bits (560), Expect = 4e-055
Identities = 136/219 (62%), Positives = 156/219 (71%), Gaps = 16/219 (7%)
Frame = -3
Query: 1193 ISSPASSMAA-SASSLALSTFNPKSLPFSISKPASIPFLPPSLSFKLNHQSISLSVSA-- 1023
+S+ ASS++A + SL L P S+ P S+ F S S +L S+
Sbjct: 1 MSASASSLSAFNPKSLPLCVSRPASVSV---LPPSLSFKLHSDHLVSIFASSALKCSSPA 57
Query: 1022 --ASRFVRNVAVTDDFSVEEEDGVFS--DDSPSQQEQSFSADLKLFVGNLPFDVDSAQLA 855
SRFVRNVAV+ DF VEE+D +F+ DDS + SFS DLKLFVGNL F+VDSAQLA
Sbjct: 58 EYPSRFVRNVAVSSDFEVEEDD-MFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLA 116
Query: 854 QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRALRVNAGP 675
QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAAAQQFNGYE +GR LRVNAGP
Sbjct: 117 QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGP 176
Query: 674 PPPKREDSFSRGPRS-SFGSS-GSGYG---GGGGGSGSG 573
PPPKRE+SFSRGPRS +GS G GYG GGG GS G
Sbjct: 177 PPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERG 215
Score = 172 bits (435), Expect = 1e-040
Identities = 87/107 (81%), Positives = 93/107 (86%), Gaps = 4/107 (3%)
Frame = -3
Query: 635 RSSFGSSGSGYGGGGGGSGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDSG 456
RSS+GS G G GSGSGNR+YVGNLSWGVDDMALE+LF EQGKV EARVIYDRDSG
Sbjct: 232 RSSYGSG----SGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSG 287
Query: 455 RSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 315
RSKGFGFVT +S+QEVQ AI +LNGADLDGRQIRVSEAEARPPR QF
Sbjct: 288 RSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 334
>gi|15231817|ref|NP_190914.1| chloroplast RNA-binding protein 29 [Arabidopsis
thaliana]
Length = 342
Score = 220 bits (560), Expect = 4e-055
Identities = 136/219 (62%), Positives = 156/219 (71%), Gaps = 16/219 (7%)
Frame = -3
Query: 1193 ISSPASSMAA-SASSLALSTFNPKSLPFSISKPASIPFLPPSLSFKLNHQSISLSVSA-- 1023
+S+ ASS++A + SL L P S+ P S+ F S S +L S+
Sbjct: 1 MSASASSLSAFNPKSLPLCVSRPASVSV---LPPSLSFKLHSDHLVSIFASSALKCSSPA 57
Query: 1022 --ASRFVRNVAVTDDFSVEEEDGVFS--DDSPSQQEQSFSADLKLFVGNLPFDVDSAQLA 855
SRFVRNVAV+ DF VEE+D +F+ DDS + SFS DLKLFVGNL F+VDSAQLA
Sbjct: 58 EYPSRFVRNVAVSSDFEVEEDD-MFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLA 116
Query: 854 QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRALRVNAGP 675
QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAAAQQFNGYE +GR LRVNAGP
Sbjct: 117 QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGP 176
Query: 674 PPPKREDSFSRGPRS-SFGSS-GSGYG---GGGGGSGSG 573
PPPKRE+SFSRGPRS +GS G GYG GGG GS G
Sbjct: 177 PPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERG 215
Score = 172 bits (435), Expect = 1e-040
Identities = 87/107 (81%), Positives = 93/107 (86%), Gaps = 4/107 (3%)
Frame = -3
Query: 635 RSSFGSSGSGYGGGGGGSGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDSG 456
RSS+GS G G GSGSGNR+YVGNLSWGVDDMALE+LF EQGKV EARVIYDRDSG
Sbjct: 240 RSSYGSG----SGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSG 295
Query: 455 RSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 315
RSKGFGFVT +S+QEVQ AI +LNGADLDGRQIRVSEAEARPPR QF
Sbjct: 296 RSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 342
>gi|297820076|ref|XP_002877921.1| hypothetical protein ARALYDRAFT_348440
[Arabidopsis lyrata subsp. lyrata]
Length = 339
Score = 218 bits (554), Expect = 2e-054
Identities = 134/219 (61%), Positives = 156/219 (71%), Gaps = 16/219 (7%)
Frame = -3
Query: 1193 ISSPASSMAA-SASSLALSTFNPKSLPFSISKPASIPFLPPSLSFKLNHQSISLSVSAAS 1017
+S+ ASS++A + SL L P S+ P S+ F S S ++ S+ +
Sbjct: 1 MSASASSLSAFNPKSLPLCVSRPASVSV---LPPSLSFKLHSDHIVSLFASSAVKCSSPA 57
Query: 1016 ----RFVRNVAVTDDFSVEEEDGVFS--DDSPSQQEQSFSADLKLFVGNLPFDVDSAQLA 855
RFVRNVAV+ DF VEE+D +F+ DDS + SFS DLKLFVGNL F+VDSAQLA
Sbjct: 58 EYPLRFVRNVAVSSDFEVEEDD-MFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLA 116
Query: 854 QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRALRVNAGP 675
QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAAAQQFNGYE +GR LRVNAGP
Sbjct: 117 QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGP 176
Query: 674 PPPKREDSFSRGPRS-SFGSS-GSGYG---GGGGGSGSG 573
PPPKRE+SFSRGPRS +GS G GYG GGG GS G
Sbjct: 177 PPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERG 215
Score = 173 bits (438), Expect = 5e-041
Identities = 88/117 (75%), Positives = 96/117 (82%), Gaps = 6/117 (5%)
Frame = -3
Query: 665 KREDSFSRGPRSSFGSSGSGYGGGGGGSGSGNRVYVGNLSWGVDDMALESLFGEQGKVAE 486
+R + RSS+GS G G GSGSGNR+YVGNLSWGVDDMALE+LF EQGKV E
Sbjct: 229 QRSGGYGGSQRSSYGS------GSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVE 282
Query: 485 ARVIYDRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 315
ARVIYDRDSGRSKGFGFVT +S+QEVQ AI +LNGADLDGRQIRVSEAEARPPR QF
Sbjct: 283 ARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 339
>gi|681904|dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 326
Score = 217 bits (552), Expect = 3e-054
Identities = 119/156 (76%), Positives = 130/156 (83%), Gaps = 8/156 (5%)
Frame = -3
Query: 1019 SRFVRNVAVTDDFSVEEEDGVFS--DDSPSQQEQSFSADLKLFVGNLPFDVDSAQLAQLF 846
SRFVRNVAV+ DF VEE+D +F+ DDS + SFS DLKLFVGNL F+VDSAQLAQLF
Sbjct: 53 SRFVRNVAVSSDFEVEEDD-MFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLF 111
Query: 845 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRALRVNAGPPPP 666
ESAGNVEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAAAQQFNGYE +GR LRVNAGPPPP
Sbjct: 112 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPP 171
Query: 665 KREDSFSRGPRS-SFGSS-GSGYG---GGGGGSGSG 573
KRE+SFSRGPRS +GS G GYG GGG GS G
Sbjct: 172 KREESFSRGPRSGGYGSERGGGYGSERGGGYGSERG 207
Score = 172 bits (435), Expect = 1e-040
Identities = 87/107 (81%), Positives = 93/107 (86%), Gaps = 4/107 (3%)
Frame = -3
Query: 635 RSSFGSSGSGYGGGGGGSGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDSG 456
RSS+GS G G GSGSGNR+YVGNLSWGVDDMALE+LF EQGKV EARVIYDRDSG
Sbjct: 224 RSSYGSG----SGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSG 279
Query: 455 RSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 315
RSKGFGFVT +S+QEVQ AI +LNGADLDGRQIRVSEAEARPPR QF
Sbjct: 280 RSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 326
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,075,932,895,059
Number of Sequences: 15229318
Number of Extensions: 3075932895059
Number of Successful Extensions: 726375405
Number of sequences better than 0.0: 0
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