BLASTX 7.6.2
Query= UN25997 /QuerySize=650
(649 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y2S0|RPAC2_HUMAN DNA-directed RNA polymerases I and III sub... 76 1e-013
sp|Q5XK67|RPAC2_XENLA DNA-directed RNA polymerases I and III sub... 76 2e-013
sp|Q1RMG8|RPAC2_BOVIN DNA-directed RNA polymerases I and III sub... 75 2e-013
sp|P97304|RPAC2_MOUSE DNA-directed RNA polymerases I and III sub... 75 2e-013
sp|Q6DRI4|RPAC2_DANRE DNA-directed RNA polymerases I and III sub... 69 2e-011
sp|P28000|RPAC2_YEAST DNA-directed RNA polymerases I and III sub... 69 3e-011
sp|Q54ES6|RPC19_DICDI DNA-directed RNA polymerases I and III sub... 67 1e-010
sp|Q9VIZ0|RPAC2_DROME Probable DNA-directed RNA polymerases I an... 59 3e-008
sp|Q9VJE4|RPB11_DROME DNA-directed RNA polymerase II subunit RPB... 58 5e-008
sp|Q9GZM3|RPB1B_HUMAN DNA-directed RNA polymerase II subunit RPB... 58 5e-008
sp|Q9H1A7|RPB1C_HUMAN DNA-directed RNA polymerase II subunit RPB... 58 5e-008
sp|Q32P79|RPB11_BOVIN DNA-directed RNA polymerase II subunit RPB... 57 7e-008
sp|P52435|RPB11_HUMAN DNA-directed RNA polymerase II subunit RPB... 57 7e-008
sp|O08740|RPB11_MOUSE DNA-directed RNA polymerase II subunit RPB... 57 7e-008
sp|Q4XS21|RPB11_PLACH Probable DNA-directed RNA polymerase II su... 57 1e-007
sp|Q38859|RPB11_ARATH DNA-directed RNA polymerase II subunit RPB... 56 2e-007
sp|Q09177|RPAC2_SCHPO DNA-directed RNA polymerases I and III sub... 56 2e-007
sp|Q60SM4|RPB11_CAEBR Probable DNA-directed RNA polymerase II su... 56 2e-007
sp|Q4YZZ7|RPB11_PLABA Probable DNA-directed RNA polymerase II su... 55 3e-007
sp|Q9XVH6|RPB11_CAEEL Probable DNA-directed RNA polymerase II su... 55 4e-007
>sp|Q9Y2S0|RPAC2_HUMAN DNA-directed RNA polymerases I and III subunit RPAC2
OS=Homo sapiens GN=POLR1D PE=1 SV=1
Length = 133
Score = 76 bits (186), Expect = 1e-013
Identities = 42/110 (38%), Positives = 67/110 (60%), Gaps = 3/110 (2%)
Frame = +3
Query: 114 SVAEAEVET--EMEHGSFTNDSHASFTLAEEDHTLANAVRFMLNQDPRVTLAGYSIPHPS 287
S+AE E +T EM + T+ +F L EEDHTL N++R+M+ ++P V GY+ HPS
Sbjct: 17 SMAEGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPS 76
Query: 288 LECVNVRVQTTGD-PAREVLKDACQELMLMNRHVRSVFDKAVSEFKVKQA 434
+N+R+QT G PA E + ELM + +HV F+ ++ ++K ++A
Sbjct: 77 ESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKDYKDQKA 126
>sp|Q5XK67|RPAC2_XENLA DNA-directed RNA polymerases I and III subunit RPAC2
OS=Xenopus laevis GN=polr1d PE=3 SV=1
Length = 114
Score = 76 bits (185), Expect = 2e-013
Identities = 42/104 (40%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Frame = +3
Query: 120 AEAEVET--EMEHGSFTNDSHASFTLAEEDHTLANAVRFMLNQDPRVTLAGYSIPHPSLE 293
AE E +T EM +S +F L EEDHTL N++R+M+ ++P V GYSI HPS
Sbjct: 3 AETERKTTLEMVQAQGNEESCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSET 62
Query: 294 CVNVRVQT-TGDPAREVLKDACQELMLMNRHVRSVFDKAVSEFK 422
+N R+QT G PA E + EL+ + +HV + F+ ++ E+K
Sbjct: 63 KINFRIQTRNGIPAVEPFRRGLNELVDVCQHVLNTFETSIKEYK 106
>sp|Q1RMG8|RPAC2_BOVIN DNA-directed RNA polymerases I and III subunit RPAC2
OS=Bos taurus GN=POLR1D PE=2 SV=1
Length = 133
Score = 75 bits (184), Expect = 2e-013
Identities = 42/110 (38%), Positives = 67/110 (60%), Gaps = 3/110 (2%)
Frame = +3
Query: 114 SVAEAEVET--EMEHGSFTNDSHASFTLAEEDHTLANAVRFMLNQDPRVTLAGYSIPHPS 287
S+AE E +T EM + T+ +F L EEDHTL N++R+M+ ++P V GY+ HPS
Sbjct: 17 SMAEGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPS 76
Query: 288 LECVNVRVQTTGD-PAREVLKDACQELMLMNRHVRSVFDKAVSEFKVKQA 434
+N+R+QT G PA E + +LM + +HV F+ ++ E+K ++A
Sbjct: 77 ESKINLRIQTRGALPAVEPFQRGLTDLMNVCQHVLDKFEASIKEYKDQKA 126
>sp|P97304|RPAC2_MOUSE DNA-directed RNA polymerases I and III subunit RPAC2
OS=Mus musculus GN=Polr1d PE=2 SV=1
Length = 133
Score = 75 bits (184), Expect = 2e-013
Identities = 41/110 (37%), Positives = 66/110 (60%), Gaps = 3/110 (2%)
Frame = +3
Query: 114 SVAEAEVET--EMEHGSFTNDSHASFTLAEEDHTLANAVRFMLNQDPRVTLAGYSIPHPS 287
S+AE E +T EM + T+ +F L EEDHTL N +R+++ ++P V GY+ HPS
Sbjct: 17 SMAEGERKTALEMVQAAGTDRQCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPS 76
Query: 288 LECVNVRVQTTGD-PAREVLKDACQELMLMNRHVRSVFDKAVSEFKVKQA 434
+N+R+QT G PA E + EL+ + +HV F+ ++ ++K K+A
Sbjct: 77 ESKINLRIQTRGALPAVEPFQKGLNELLNVCQHVLVKFEASIKDYKAKKA 126
>sp|Q6DRI4|RPAC2_DANRE DNA-directed RNA polymerases I and III subunit RPAC2
OS=Danio rerio GN=polr1d PE=3 SV=1
Length = 112
Score = 69 bits (168), Expect = 2e-011
Identities = 37/98 (37%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Frame = +3
Query: 141 EMEHGSFTNDSHASFTLAEEDHTLANAVRFMLNQDPRVTLAGYSIPHPSLECVNVRVQT- 317
EM ++ +F L EEDHTL N++R+M+ + V GYSI HPS +N R+QT
Sbjct: 11 EMVRTDGADEGCVTFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTR 70
Query: 318 TGDPAREVLKDACQELMLMNRHVRSVFDKAVSEFKVKQ 431
G PA E L++ L + +HV F+ + EFK ++
Sbjct: 71 DGVPASEPLRNGLNNLTDVCKHVLQTFEARMKEFKEQE 108
>sp|P28000|RPAC2_YEAST DNA-directed RNA polymerases I and III subunit RPAC2
OS=Saccharomyces cerevisiae GN=RPC19 PE=1 SV=1
Length = 142
Score = 69 bits (166), Expect = 3e-011
Identities = 38/107 (35%), Positives = 63/107 (58%), Gaps = 5/107 (4%)
Frame = +3
Query: 105 SGNSVAEAEVETE----MEHGSFTNDSHASFTLAEEDHTLANAVRFMLNQDPRVTLAGYS 272
+G+ E E + E + + + + ASF + EEDHTL NA+R+++ ++P V GYS
Sbjct: 33 TGDEEQEEEPDREKIKLLTQATSEDGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYS 92
Query: 273 IPHPSLECVNVRVQTTGD-PAREVLKDACQELMLMNRHVRSVFDKAV 410
IPHPS +N+R+QT G+ A + L+ ++LM + V S F + +
Sbjct: 93 IPHPSENLLNIRIQTYGETTAVDALQKGLKDLMDLCDVVESKFTEKI 139
>sp|Q54ES6|RPC19_DICDI DNA-directed RNA polymerases I and III subunit rpc19
OS=Dictyostelium discoideum GN=rpc19 PE=3 SV=1
Length = 116
Score = 67 bits (161), Expect = 1e-010
Identities = 31/81 (38%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Frame = +3
Query: 177 ASFTLAEEDHTLANAVRFMLNQDPRVTLAGYSIPHPSLECVNVRVQTTGD-PAREVLKDA 353
A+F +EDHTL NA+ ++L ++P+V +GYSIPHPS +N+R+QT + A+E L
Sbjct: 36 ATFIFTDEDHTLGNALHYVLMKNPKVDFSGYSIPHPSDNRMNLRIQTKSNITAQESLLQG 95
Query: 354 CQELMLMNRHVRSVFDKAVSE 416
++ ++RH+ F+ A+ +
Sbjct: 96 LTDIKDISRHIFETFNNALDQ 116
>sp|Q9VIZ0|RPAC2_DROME Probable DNA-directed RNA polymerases I and III subunit
RPAC2 OS=Drosophila melanogaster GN=l(2)37Cg PE=1 SV=1
Length = 105
Score = 59 bits (140), Expect = 3e-008
Identities = 27/80 (33%), Positives = 48/80 (60%)
Frame = +3
Query: 180 SFTLAEEDHTLANAVRFMLNQDPRVTLAGYSIPHPSLECVNVRVQTTGDPAREVLKDACQ 359
+F E HTL NA++ ++ + P V GY+IPHP+ + ++ R+Q+ D A ++LK +
Sbjct: 19 TFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRDRAIDILKRGLE 78
Query: 360 ELMLMNRHVRSVFDKAVSEF 419
+L + H F+K ++EF
Sbjct: 79 DLEGLCDHTIVTFEKEMAEF 98
>sp|Q9VJE4|RPB11_DROME DNA-directed RNA polymerase II subunit RPB11
OS=Drosophila melanogaster GN=Rpb11 PE=1 SV=1
Length = 117
Score = 58 bits (138), Expect = 5e-008
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +3
Query: 177 ASFTLAEEDHTLANAVRFMLNQDPRVTLAGYSIPHPSLECVNVRVQTTGD-PAREVLKDA 353
A FT+ +EDHTL N +R L +DP V AGY +PHP +R+QTT D +E +A
Sbjct: 31 AIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFMNA 90
Query: 354 CQELMLMNRHVRSVFDKAVSEFK 422
+L+ F A+ E K
Sbjct: 91 ITDLLAELSLFEERFKDAIKEKK 113
>sp|Q9GZM3|RPB1B_HUMAN DNA-directed RNA polymerase II subunit RPB11-b1 OS=Homo
sapiens GN=POLR2J2 PE=1 SV=1
Length = 115
Score = 58 bits (138), Expect = 5e-008
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Frame = +3
Query: 183 FTLAEEDHTLANAVRFMLNQDPRVTLAGYSIPHPSLECVNVRVQTTGDPARE-----VLK 347
FT+ +EDHTL N ++ L +DP+V AGY +PHP + +RVQTT D + + +
Sbjct: 32 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 91
Query: 348 DACQELMLMNRHVRS 392
D EL L+ R+
Sbjct: 92 DLISELSLLEERFRT 106
>sp|Q9H1A7|RPB1C_HUMAN DNA-directed RNA polymerase II subunit RPB11-b2 OS=Homo
sapiens GN=POLR2J3 PE=3 SV=1
Length = 115
Score = 58 bits (138), Expect = 5e-008
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Frame = +3
Query: 183 FTLAEEDHTLANAVRFMLNQDPRVTLAGYSIPHPSLECVNVRVQTTGDPARE-----VLK 347
FT+ +EDHTL N ++ L +DP+V AGY +PHP + +RVQTT D + + +
Sbjct: 32 FTMNKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 91
Query: 348 DACQELMLMNRHVRS 392
D EL L+ R+
Sbjct: 92 DLISELSLLEERFRT 106
>sp|Q32P79|RPB11_BOVIN DNA-directed RNA polymerase II subunit RPB11 OS=Bos
taurus GN=POLR2J PE=3 SV=1
Length = 117
Score = 57 bits (137), Expect = 7e-008
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Frame = +3
Query: 183 FTLAEEDHTLANAVRFMLNQDPRVTLAGYSIPHPSLECVNVRVQTTGDPARE-----VLK 347
FT+ +EDHTL N ++ L +DP+V AGY +PHP + +RVQTT D + + +
Sbjct: 33 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 92
Query: 348 DACQELMLMNRHVR 389
D EL L+ R
Sbjct: 93 DLISELSLLEERFR 106
>sp|P52435|RPB11_HUMAN DNA-directed RNA polymerase II subunit RPB11-a OS=Homo
sapiens GN=POLR2J PE=1 SV=1
Length = 117
Score = 57 bits (137), Expect = 7e-008
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Frame = +3
Query: 183 FTLAEEDHTLANAVRFMLNQDPRVTLAGYSIPHPSLECVNVRVQTTGDPARE-----VLK 347
FT+ +EDHTL N ++ L +DP+V AGY +PHP + +RVQTT D + + +
Sbjct: 33 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 92
Query: 348 DACQELMLMNRHVR 389
D EL L+ R
Sbjct: 93 DLISELSLLEERFR 106
>sp|O08740|RPB11_MOUSE DNA-directed RNA polymerase II subunit RPB11 OS=Mus
musculus GN=Polr2j PE=2 SV=1
Length = 117
Score = 57 bits (137), Expect = 7e-008
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Frame = +3
Query: 183 FTLAEEDHTLANAVRFMLNQDPRVTLAGYSIPHPSLECVNVRVQTTGDPARE-----VLK 347
FT+ +EDHTL N ++ L +DP+V AGY +PHP + +RVQTT D + + +
Sbjct: 33 FTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAIT 92
Query: 348 DACQELMLMNRHVR 389
D EL L+ R
Sbjct: 93 DLISELSLLEERFR 106
>sp|Q4XS21|RPB11_PLACH Probable DNA-directed RNA polymerase II subunit RPB11
OS=Plasmodium chabaudi GN=PC000833.03.0 PE=3 SV=1
Length = 126
Score = 57 bits (135), Expect = 1e-007
Identities = 27/84 (32%), Positives = 43/84 (51%)
Frame = +3
Query: 183 FTLAEEDHTLANAVRFMLNQDPRVTLAGYSIPHPSLECVNVRVQTTGDPAREVLKDACQE 362
FT+ EDHT+ N ++ L QDP+VT A Y PHP + + ++ G ++L D
Sbjct: 38 FTIKLEDHTIGNLIKQSLCQDPKVTFAAYRQPHPLQNAIEITIRPKGYAGVKLLSDNVHS 97
Query: 363 LMLMNRHVRSVFDKAVSEFKVKQA 434
++ +R F V ++K K A
Sbjct: 98 ILNQVSTLRETFANRVQKYKEKNA 121
>sp|Q38859|RPB11_ARATH DNA-directed RNA polymerase II subunit RPB11
OS=Arabidopsis thaliana GN=RPB13.6 PE=2 SV=1
Length = 116
Score = 56 bits (134), Expect = 2e-007
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +3
Query: 177 ASFTLAEEDHTLANAVRFMLNQDPRVTLAGYSIPHPSLECVNVRVQTTGDPA-REVLKDA 353
ASFT+ EDHT+ N VR L++D V AGY +PHP + VR+ TT + + A
Sbjct: 31 ASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQAYNQA 90
Query: 354 CQELMLMNRHVRSVFDKAVSEF 419
+L ++++ F+ V++F
Sbjct: 91 INDLDKELDYLKNQFEAEVAKF 112
>sp|Q09177|RPAC2_SCHPO DNA-directed RNA polymerases I and III subunit RPAC2
OS=Schizosaccharomyces pombe GN=rpc19 PE=2 SV=1
Length = 125
Score = 56 bits (133), Expect = 2e-007
Identities = 26/64 (40%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 180 SFTLAEEDHTLANAVRFMLNQDPRVTLAGYSIPHPSLECVNVRVQTT-GDPAREVLKDAC 356
+F + +EDHTL N++R+++ ++P V GYSIPHPS +N R+QT A +VL+
Sbjct: 36 TFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVLRKGL 95
Query: 357 QELM 368
+L+
Sbjct: 96 DDLI 99
>sp|Q60SM4|RPB11_CAEBR Probable DNA-directed RNA polymerase II subunit RPB11
OS=Caenorhabditis briggsae GN=CBG20834 PE=3 SV=1
Length = 122
Score = 56 bits (133), Expect = 2e-007
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = +3
Query: 177 ASFTLAEEDHTLANAVRFMLNQDPRVTLAGYSIPHPSLECVNVRVQTT-----GDPAREV 341
A FT+ +EDHTL N ++ L +DP V AGY PHP + +RVQTT D
Sbjct: 30 AIFTINKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRVQTTNATTPADALTTA 89
Query: 342 LKDACQELMLMNRHVRSVFDK 404
+ D EL L+ + S K
Sbjct: 90 ITDLVGELSLLEHRIDSAIKK 110
>sp|Q4YZZ7|RPB11_PLABA Probable DNA-directed RNA polymerase II subunit RPB11
OS=Plasmodium berghei (strain Anka) GN=PB000758.01.0 PE=3 SV=1
Length = 126
Score = 55 bits (132), Expect = 3e-007
Identities = 27/84 (32%), Positives = 43/84 (51%)
Frame = +3
Query: 183 FTLAEEDHTLANAVRFMLNQDPRVTLAGYSIPHPSLECVNVRVQTTGDPAREVLKDACQE 362
FT+ EDHT+ N ++ L QDP+VT A Y PHP + + ++ G ++L D
Sbjct: 38 FTIKLEDHTIGNLIKQSLCQDPKVTFAAYRQPHPLQNVIEITIRPKGYAGVKLLSDNVHT 97
Query: 363 LMLMNRHVRSVFDKAVSEFKVKQA 434
++ +R F V ++K K A
Sbjct: 98 ILNQVSTLRETFVNKVQKYKEKNA 121
>sp|Q9XVH6|RPB11_CAEEL Probable DNA-directed RNA polymerase II subunit RPB11
OS=Caenorhabditis elegans GN=W01G7.3 PE=2 SV=1
Length = 122
Score = 55 bits (130), Expect = 4e-007
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = +3
Query: 177 ASFTLAEEDHTLANAVRFMLNQDPRVTLAGYSIPHPSLECVNVRVQTT-----GDPAREV 341
A FT+ +EDHTL N ++ L +DP V AGY PHP + +R+QTT D
Sbjct: 30 AIFTIMKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRIQTTNNTTPADALTTA 89
Query: 342 LKDACQELMLMNRHVRSVFDK 404
+ D EL L+ + + K
Sbjct: 90 ITDLVGELSLLEHRIDAAIKK 110
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,807,929,624
Number of Sequences: 518415
Number of Extensions: 106807929624
Number of Successful Extensions: 680323231
Number of sequences better than 0.0: 0
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