BLASTX 7.6.2
Query= UN25997 /QuerySize=650
(649 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G29540.1 | Symbols: ATRPC14, ATRPAC14 | ATRPC1... 195 3e-050
TAIR9_protein||AT2G29540.2 | Symbols: ATRPC14, ATRPAC14 | ATRPC1... 195 3e-050
TAIR9_protein||AT2G29540.3 | Symbols: ATRPC14, ATRPAC14 | ATRPC1... 132 2e-031
TAIR9_protein||AT3G52090.1 | Symbols: ATRPB13.6, NRPB11, NRPD11,... 56 1e-008
>TAIR9_protein||AT2G29540.1 | Symbols: ATRPC14, ATRPAC14 | ATRPC14 (RNA
POLYMERASE 14 KDA SUBUNIT); DNA binding / DNA-directed RNA polymerase/
protein dimerization | chr2:12642727-12643828 FORWARD
Length = 123
Score = 195 bits (493), Expect = 3e-050
Identities = 97/130 (74%), Positives = 112/130 (86%), Gaps = 7/130 (5%)
Frame = +3
Query: 144 MEHGSFTNDSHASFTLAEEDHTLANAVRFMLNQDPRVTLAGYSIPHPSLECVNVRVQTTG 323
MEHGSFTN SHASFTL+EEDHTLANAVRF+LNQDPRVT+A Y+IPHPSLE VN+RVQTTG
Sbjct: 1 MEHGSFTNVSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTG 60
Query: 324 DPAREVLKDACQELMLMNRHVRSVFDKAVSEFKVKQARLATEEEKNKKAEEEELKK*RDL 503
DPAREV KDACQELM MNRHVRSVFDKAV+E+K E+++ ++AEEEELK+ RDL
Sbjct: 61 DPAREVFKDACQELMQMNRHVRSVFDKAVAEYK-------DEQKRKEEAEEEELKRQRDL 113
Query: 504 LASMDIESD* 533
SMDIE++*
Sbjct: 114 FGSMDIENN* 123
>TAIR9_protein||AT2G29540.2 | Symbols: ATRPC14, ATRPAC14 | ATRPC14 (RNA
POLYMERASE 14 KDA SUBUNIT); DNA binding / DNA-directed RNA polymerase/
protein dimerization | chr2:12642727-12643828 FORWARD
Length = 123
Score = 195 bits (493), Expect = 3e-050
Identities = 97/130 (74%), Positives = 112/130 (86%), Gaps = 7/130 (5%)
Frame = +3
Query: 144 MEHGSFTNDSHASFTLAEEDHTLANAVRFMLNQDPRVTLAGYSIPHPSLECVNVRVQTTG 323
MEHGSFTN SHASFTL+EEDHTLANAVRF+LNQDPRVT+A Y+IPHPSLE VN+RVQTTG
Sbjct: 1 MEHGSFTNVSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTG 60
Query: 324 DPAREVLKDACQELMLMNRHVRSVFDKAVSEFKVKQARLATEEEKNKKAEEEELKK*RDL 503
DPAREV KDACQELM MNRHVRSVFDKAV+E+K E+++ ++AEEEELK+ RDL
Sbjct: 61 DPAREVFKDACQELMQMNRHVRSVFDKAVAEYK-------DEQKRKEEAEEEELKRQRDL 113
Query: 504 LASMDIESD* 533
SMDIE++*
Sbjct: 114 FGSMDIENN* 123
>TAIR9_protein||AT2G29540.3 | Symbols: ATRPC14, ATRPAC14 | ATRPC14 (RNA
POLYMERASE 14 KDA SUBUNIT); DNA binding / DNA-directed RNA polymerase/
protein dimerization | chr2:12643288-12643828 FORWARD
Length = 140
Score = 132 bits (331), Expect = 2e-031
Identities = 66/96 (68%), Positives = 79/96 (82%), Gaps = 7/96 (7%)
Frame = +3
Query: 246 PRVTLAGYSIPHPSLECVNVRVQTTGDPAREVLKDACQELMLMNRHVRSVFDKAVSEFKV 425
PRVT+A Y+IPHPSLE VN+RVQTTGDPAREV KDACQELM MNRHVRSVFDKAV+E+K
Sbjct: 52 PRVTVAAYTIPHPSLEQVNIRVQTTGDPAREVFKDACQELMQMNRHVRSVFDKAVAEYK- 110
Query: 426 KQARLATEEEKNKKAEEEELKK*RDLLASMDIESD* 533
E+++ ++AEEEELK+ RDL SMDIE++*
Sbjct: 111 ------DEQKRKEEAEEEELKRQRDLFGSMDIENN* 140
>TAIR9_protein||AT3G52090.1 | Symbols: ATRPB13.6, NRPB11, NRPD11, NRPE11 |
NRPB11; DNA binding / DNA-directed RNA polymerase |
chr3:19318069-19318998 REVERSE
Length = 117
Score = 56 bits (134), Expect = 1e-008
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +3
Query: 177 ASFTLAEEDHTLANAVRFMLNQDPRVTLAGYSIPHPSLECVNVRVQTTGDPA-REVLKDA 353
ASFT+ EDHT+ N VR L++D V AGY +PHP + VR+ TT + + A
Sbjct: 31 ASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQAYNQA 90
Query: 354 CQELMLMNRHVRSVFDKAVSEF 419
+L ++++ F+ V++F
Sbjct: 91 INDLDKELDYLKNQFEAEVAKF 112
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,304,570,537
Number of Sequences: 33410
Number of Extensions: 13304570537
Number of Successful Extensions: 418736496
Number of sequences better than 0.0: 0
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