BLASTX 7.6.2
Query= UN27896 /QuerySize=1154
(1153 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDI... 255 6e-068
TAIR9_protein||AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDI... 224 1e-058
TAIR9_protein||AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | PAB2... 171 9e-043
TAIR9_protein||AT1G49760.1 | Symbols: PAB8, PABP8 | PAB8 (POLY(A... 159 5e-039
TAIR9_protein||AT2G23350.1 | Symbols: PAB4, PABP4 | PAB4 (POLY(A... 134 1e-031
TAIR9_protein||AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDI... 101 9e-022
TAIR9_protein||AT3G16380.1 | Symbols: PAB6 | PAB6 (POLY(A) BINDI... 98 8e-021
TAIR9_protein||AT1G34140.1 | Symbols: PAB1 | PAB1 (POLY(A) BINDI... 89 4e-018
TAIR9_protein||AT2G18510.1 | Symbols: emb2444 | emb2444 (embryo ... 83 3e-016
TAIR9_protein||AT5G54900.1 | Symbols: ATRBP45A | ATRBP45A (RNA-b... 50 2e-006
>TAIR9_protein||AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN 5);
RNA binding / poly(A) binding / translation initiation factor |
chr1:26990777-26993447 REVERSE
Length = 669
Score = 255 bits (649), Expect = 6e-068
Identities = 134/166 (80%), Positives = 143/166 (86%), Gaps = 7/166 (4%)
Frame = -1
Query: 478 MVDQV-PNQPASTVAS----PHATQVAAV--AAAAAEALQTHPNSSLYVGDLDQSVNEAH 320
MVDQV PNQP A+ P +QVAAV AAAAAEALQTHPNSSLYVGDLD SVNE+H
Sbjct: 1 MVDQVIPNQPTVAAAAPPPFPAVSQVAAVAAAAAAAEALQTHPNSSLYVGDLDPSVNESH 60
Query: 319 LLDLFNQVAPVQTVRVCRDLTRRSLGYAYVNFANPDDAMRAMDILNYTPIRERPIRIMRS 140
LLDLFNQVAPV +RVCRDLT RSLGYAYVNFANP+DA RAM+ LNY PIR+RPIRIM S
Sbjct: 61 LLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLS 120
Query: 139 NRDPSTRLSGKGNVFIKNLDGTIDNKALYDTFSSFGTILSCNVAMD 2
NRDPSTRLSGKGNVFIKNLD +IDNKALY+TFSSFGTILSC VAMD
Sbjct: 121 NRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD 166
>TAIR9_protein||AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3);
RNA binding / translation initiation factor | chr1:8055599-8058799
FORWARD
Length = 661
Score = 224 bits (569), Expect = 1e-058
Identities = 116/170 (68%), Positives = 132/170 (77%), Gaps = 3/170 (1%)
Frame = -1
Query: 511 AVASGIAPTTAMVDQVPNQPASTVASPHATQVAAVAAAAAEALQTHPNSSLYVGDLDQSV 332
AVA+G+AP T MVDQVP+ A T S + + A QTHPNSSLY GDLD V
Sbjct: 4 AVATGVAPAT-MVDQVPSPTAQT--SVQVPVSIPLPSPVVVADQTHPNSSLYAGDLDPKV 60
Query: 331 NEAHLLDLFNQVAPVQTVRVCRDLTRRSLGYAYVNFANPDDAMRAMDILNYTPIRERPIR 152
EAHL DLF VA V +VRVCRD RRSLGYAY+NF+NP+DA RAM+ LNYTP+ +RPIR
Sbjct: 61 TEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIR 120
Query: 151 IMRSNRDPSTRLSGKGNVFIKNLDGTIDNKALYDTFSSFGTILSCNVAMD 2
IM SNRDPSTRLSGKGN+FIKNLD +IDNKAL++TFSSFGTILSC VAMD
Sbjct: 121 IMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMD 170
>TAIR9_protein||AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | PAB2 (POLY(A)
BINDING 2); RNA binding / translation initiation factor |
chr4:16336732-16339892 FORWARD
Length = 630
Score = 171 bits (432), Expect = 9e-043
Identities = 91/157 (57%), Positives = 108/157 (68%), Gaps = 8/157 (5%)
Frame = -1
Query: 469 QVPNQPASTVASPHATQVAAVAAAAAEALQTHPNSSLYVGDLDQSVNEAHLLDLFNQVAP 290
Q PN + V S AT A A N+SLYVGDLD +V ++ L D F Q+
Sbjct: 9 QTPNGSTAAVTSAPATSGGATATQFG-------NTSLYVGDLDFNVTDSQLFDAFGQMGT 61
Query: 289 VQTVRVCRDL-TRRSLGYAYVNFANPDDAMRAMDILNYTPIRERPIRIMRSNRDPSTRLS 113
V TVRVCRDL TRRSLGY YVNF NP DA RA+ LNY P+ +PIR+M S+RDPS R S
Sbjct: 62 VVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRS 121
Query: 112 GKGNVFIKNLDGTIDNKALYDTFSSFGTILSCNVAMD 2
G GN+FIKNLD +ID+KAL+DTFSSFG I+SC VA+D
Sbjct: 122 GAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD 158
>TAIR9_protein||AT1G49760.1 | Symbols: PAB8, PABP8 | PAB8 (POLY(A) BINDING
PROTEIN 8); RNA binding / translation initiation factor |
chr1:18416740-18419753 FORWARD
Length = 672
Score = 159 bits (400), Expect = 5e-039
Identities = 83/147 (56%), Positives = 104/147 (70%), Gaps = 1/147 (0%)
Frame = -1
Query: 439 ASPHATQVAAVAAAAAEALQTHPNSSLYVGDLDQSVNEAHLLDLFNQVAPVQTVRVCRDL 260
A+ A AA AAAAA +SLYVGDLD +V ++ L + F Q V +VRVCRD+
Sbjct: 21 AAAEAAAAAAGAAAAAAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDM 80
Query: 259 -TRRSLGYAYVNFANPDDAMRAMDILNYTPIRERPIRIMRSNRDPSTRLSGKGNVFIKNL 83
TRRSLGY YVN+A P DA RA++ LN+ + R IR+M S RDPS R SG GN+FIKNL
Sbjct: 81 TTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNL 140
Query: 82 DGTIDNKALYDTFSSFGTILSCNVAMD 2
D +ID+KAL++TFS+FG ILSC VA+D
Sbjct: 141 DKSIDHKALHETFSAFGPILSCKVAVD 167
>TAIR9_protein||AT2G23350.1 | Symbols: PAB4, PABP4 | PAB4 (POLY(A) BINDING
PROTEIN 4); RNA binding / translation initiation factor |
chr2:9943209-9946041 FORWARD
Length = 663
Score = 134 bits (336), Expect = 1e-031
Identities = 68/122 (55%), Positives = 87/122 (71%), Gaps = 1/122 (0%)
Frame = -1
Query: 364 SLYVGDLDQSVNEAHLLDLFNQVAPVQTVRVCRD-LTRRSLGYAYVNFANPDDAMRAMDI 188
SLYVGDLD +V ++ L D F +V V +VRVCRD T SLGY YVN++N DDA +AM
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 187 LNYTPIRERPIRIMRSNRDPSTRLSGKGNVFIKNLDGTIDNKALYDTFSSFGTILSCNVA 8
LNY+ + + IRI S+RD S R SG GN+F+KNLD ++DNK L++ FS GTI+SC VA
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVA 166
Query: 7 MD 2
D
Sbjct: 167 TD 168
>TAIR9_protein||AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDING PROTEIN 7);
RNA binding / translation initiation factor | chr2:15361476-15364398
REVERSE
Length = 610
Score = 101 bits (251), Expect = 9e-022
Identities = 60/145 (41%), Positives = 85/145 (58%), Gaps = 3/145 (2%)
Frame = -1
Query: 439 ASPHATQVAAVAAAAAEALQTHPNSSLYVGDLDQSVNEAHLLDLFNQVAPVQTVRVCRDL 260
A+ HA AA A+++ + + +SLYVGDL SV E L D F + + +VR+C+D
Sbjct: 2 ATVHAALHAADASSSGSS--SPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDA 59
Query: 259 TR-RSLGYAYVNFANPDDAMRAMDILNYTPIRERPIRIMRSNRDPSTRLSGKGNVFIKNL 83
+ RSL Y Y NF + DA A++ N + + + IR+M S R P R +G GNVF+KNL
Sbjct: 60 SSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNL 119
Query: 82 DGTIDNKALYDTFSSFGTILSCNVA 8
++ N L D F FG I+SC VA
Sbjct: 120 PESVTNAVLQDMFKKFGNIVSCKVA 144
>TAIR9_protein||AT3G16380.1 | Symbols: PAB6 | PAB6 (POLY(A) BINDING PROTEIN 6);
RNA binding / translation initiation factor | chr3:5558676-5560993
REVERSE
Length = 538
Score = 98 bits (243), Expect = 8e-021
Identities = 58/142 (40%), Positives = 85/142 (59%), Gaps = 8/142 (5%)
Frame = -1
Query: 412 AVAAAAAEALQTHPNS----SLYVGDLDQSVNEAHLLDLFNQVAPVQTVRVCRD-LTRRS 248
A+ +AL H +S SLYVGDL V E L+D F+ PV +V +CR+ +T +S
Sbjct: 2 ALVKTETQALGNHQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKS 61
Query: 247 LGYAYVNFANPDDAMRAMDILNYTPIRERPIRIMRSNRDPSTR---LSGKGNVFIKNLDG 77
+ YAY+NF +P A AM LN++ ++ + +RIM S RD + R +G N+++KNLD
Sbjct: 62 MCYAYINFDSPFSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDS 121
Query: 76 TIDNKALYDTFSSFGTILSCNV 11
+I + L F FG+ILSC V
Sbjct: 122 SITSSCLERMFCPFGSILSCKV 143
>TAIR9_protein||AT1G34140.1 | Symbols: PAB1 | PAB1 (POLY(A) BINDING PROTEIN 1);
RNA binding / translation initiation factor | chr1:12433356-12434735
REVERSE
Length = 408
Score = 89 bits (220), Expect = 4e-018
Identities = 40/65 (61%), Positives = 52/65 (80%)
Frame = -1
Query: 196 MDILNYTPIRERPIRIMRSNRDPSTRLSGKGNVFIKNLDGTIDNKALYDTFSSFGTILSC 17
M++LNY ++ +P+RIM S RDPS R+SG+GNVF+KNLD +IDNK L D FS+FG +LSC
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSC 60
Query: 16 NVAMD 2
VA D
Sbjct: 61 KVARD 65
>TAIR9_protein||AT2G18510.1 | Symbols: emb2444 | emb2444 (embryo defective
2444); RNA binding / nucleic acid binding / nucleotide binding |
chr2:8031554-8033517 REVERSE
Length = 364
Score = 83 bits (204), Expect = 3e-016
Identities = 45/122 (36%), Positives = 74/122 (60%), Gaps = 2/122 (1%)
Frame = -1
Query: 382 QTHPNSSLYVGDLDQSVNEAHLLDLFNQVAPVQTVRVCRD-LTRRSLGYAYVNFANPDDA 206
+ + ++++YVG LD ++E L +LF Q PV V V +D +T Y ++ + + +DA
Sbjct: 20 ERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDA 79
Query: 205 MRAMDILNYTPIRERPIRIMRSNRDPSTRLSGKGNVFIKNLDGTIDNKALYDTFSSFGTI 26
A+ +LN + +PIR+ ++++D + L N+FI NLD +D K LYDTFS+FG I
Sbjct: 80 DYAIKVLNMIKLHGKPIRVNKASQDKKS-LDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
Query: 25 LS 20
S
Sbjct: 139 AS 140
>TAIR9_protein||AT5G54900.1 | Symbols: ATRBP45A | ATRBP45A (RNA-binding protein
45A); RNA binding | chr5:22295412-22298126 FORWARD
Length = 388
Score = 50 bits (119), Expect = 2e-006
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Frame = -1
Query: 412 AVAAAAAEALQTH-PNSSLYVGDLDQSVNEAHLLDLFNQV-APVQTVRVCRD-LTRRSLG 242
A A A + QT P+ +++VGDL V + L D F V V+ +V D T RS G
Sbjct: 138 AQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKG 197
Query: 241 YAYVNFANPDDAMRAMDILNYTPIRERPIRI 149
Y +V FA+ ++ MRAM +N RP+RI
Sbjct: 198 YGFVRFADENEQMRAMTEMNGQYCSTRPMRI 228
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,534,877,335
Number of Sequences: 33410
Number of Extensions: 14534877335
Number of Successful Extensions: 466470437
Number of sequences better than 0.0: 0
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