BLASTX 7.6.2
Query= UN28062 /QuerySize=1297
(1296 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein DRT11... 597 9e-170
sp|Q96I25|SPF45_HUMAN Splicing factor 45 OS=Homo sapiens GN=RBM1... 148 1e-034
sp|Q8JZX4|SPF45_MOUSE Splicing factor 45 OS=Mus musculus GN=Rbm1... 147 2e-034
sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=B... 93 4e-018
sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=M... 93 4e-018
sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rat... 93 4e-018
sp|Q8T6B9|PUF68_DROME Poly(U)-binding-splicing factor half pint ... 92 6e-018
sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=H... 90 4e-017
sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=P... 90 4e-017
sp|Q6IQE0|PU60B_DANRE Poly(U)-binding-splicing factor PUF60-B OS... 89 5e-017
sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Or... 62 8e-009
sp|Q54PM6|Y8605_DICDI Uncharacterized protein DDB_G0284459 OS=Di... 56 4e-007
sp|P49756|RBM25_HUMAN RNA-binding protein 25 OS=Homo sapiens GN=... 52 8e-006
sp|B2RY56|RBM25_MOUSE RNA-binding protein 25 OS=Mus musculus GN=... 52 8e-006
sp|Q4KMP7|TB10B_HUMAN TBC1 domain family member 10B OS=Homo sapi... 52 8e-006
>sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein DRT111,
chloroplastic OS=Arabidopsis thaliana GN=DRT111 PE=2 SV=2
Length = 387
Score = 597 bits (1537), Expect = 9e-170
Identities = 310/389 (79%), Positives = 339/389 (87%), Gaps = 21/389 (5%)
Frame = -1
Query: 1296 GDLPPPSDDDKPTGNSSSSSVWSSSTKMAPPTLRKPPAFAPTQTIIRPQSKPKPQYKPPP 1117
GDLPPP+DD+KP+GN SSSVWSSSTKMAPPTLRKPPAFAP QTI+RP +KPKP P
Sbjct: 7 GDLPPPTDDEKPSGN--SSSVWSSSTKMAPPTLRKPPAFAPPQTILRPLNKPKPIVSAPY 64
Query: 1116 PPPPP---TQSIITP----APPSQPALVGVTSSVIEEYDPARPNDYEEYRREKKKKAMEA 958
PPPP +QS++ P AP QPALVGVTSSVIEEYDPARPNDYEEY+REKK+KA EA
Sbjct: 65 KPPPPSNSSQSVLIPANESAPSHQPALVGVTSSVIEEYDPARPNDYEEYKREKKRKATEA 124
Query: 957 EMKRELDKRRREEEEREEMEKKKERERERERFDHHQTPLNISGEEAWKRRAAMSG---GK 787
EMKRE+DKRR+E+EER++ E ++ERE+ERER + + LNISGEEAWKRRAAMSG G
Sbjct: 125 EMKREMDKRRQEDEERDKRE-REEREKERERDNSDPSRLNISGEEAWKRRAAMSGGGSGG 183
Query: 786 RGRSSSPPPHAGNGVDDGFSMGTSETSGLGVGAGGQMTAAERMMAKMGWKQGQGLGKSEQ 607
+GRSSSPP G DGFS+G SETSGLGVGAGGQMTAA+RMMAKMGWKQGQGLGKSEQ
Sbjct: 184 KGRSSSPP-----GNVDGFSIGKSETSGLGVGAGGQMTAAQRMMAKMGWKQGQGLGKSEQ 238
Query: 606 GITTPLMAKKTDRRAGVIVNASEKKVVAA---VVKGVNISGEPTRVLLLRNMVGPGEVDD 436
GITTPLMAKKTDRRAGVIVNASE K +A VVK VNI+GEPTRVLLLRNMVGPG+VDD
Sbjct: 239 GITTPLMAKKTDRRAGVIVNASENKSSSAEKKVVKSVNINGEPTRVLLLRNMVGPGQVDD 298
Query: 435 ELEEEVGSECGKYGTVTRVLIFEITQPNFPTHEAVRIFVQFSRPEETTKALVDLDGRFFG 256
ELE+EVG ECGKYGTVTRVLIFEIT+PNFP HEAVRIFVQFSRPEETTKALVDLDGR+FG
Sbjct: 299 ELEDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDLDGRYFG 358
Query: 255 GRTVRATFYDESKFSKNELAPVPGEIPGY 169
GRTVRATFYDE KFSKNELAPVPGEIPGY
Sbjct: 359 GRTVRATFYDEEKFSKNELAPVPGEIPGY 387
>sp|Q96I25|SPF45_HUMAN Splicing factor 45 OS=Homo sapiens GN=RBM17 PE=1 SV=1
Length = 401
Score = 148 bits (372), Expect = 1e-034
Identities = 81/164 (49%), Positives = 107/164 (65%), Gaps = 6/164 (3%)
Frame = -1
Query: 675 TAAERMMAKMGWKQGQGLGKSEQGITTPLMAKKTDRRAGVIVNASEKKVVAAVVKGVNIS 496
T A ++M K G+++GQGLGK EQG++T L +KT +R G I+ + A+ N
Sbjct: 237 TVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKDASKKSDSNPL 296
Query: 495 GE----PTRVLLLRNMVGPGEVDDELEEEVGSECGKYGTVTRVLIFEITQPNFPTHEAVR 328
E PT+V+LLRNMVG GEVD++LE E EC KYG V + +IFEI P P EAVR
Sbjct: 297 TEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEI--PGAPDDEAVR 354
Query: 327 IFVQFSRPEETTKALVDLDGRFFGGRTVRATFYDESKFSKNELA 196
IF++F R E KA+VDL+GR+FGGR V+A FY+ KF +LA
Sbjct: 355 IFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLA 398
>sp|Q8JZX4|SPF45_MOUSE Splicing factor 45 OS=Mus musculus GN=Rbm17 PE=1 SV=1
Length = 405
Score = 147 bits (370), Expect = 2e-034
Identities = 83/168 (49%), Positives = 109/168 (64%), Gaps = 10/168 (5%)
Frame = -1
Query: 675 TAAERMMAKMGWKQGQGLGKSEQGITTPLMAKKTDRRAGVIV--NASEKKVVAAVVKG-- 508
T A ++M K G+++GQGLGK EQG++T L +KT +R G I+ +A+EK K
Sbjct: 237 TVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKGEAQDASKKSD 296
Query: 507 ----VNISGEPTRVLLLRNMVGPGEVDDELEEEVGSECGKYGTVTRVLIFEITQPNFPTH 340
I PT+V+LLRNMVG GEVD++LE E EC KYG V + +IFEI P P
Sbjct: 297 SNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEI--PGAPDD 354
Query: 339 EAVRIFVQFSRPEETTKALVDLDGRFFGGRTVRATFYDESKFSKNELA 196
EAVRIF++F R E KA+VDL+GR+FGGR V+A FY+ KF +LA
Sbjct: 355 EAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLA 402
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus
GN=PUF60 PE=2 SV=1
Length = 530
Score = 93 bits (229), Expect = 4e-018
Identities = 47/100 (47%), Positives = 68/100 (68%), Gaps = 1/100 (1%)
Frame = -1
Query: 492 EPTRVLLLRNMVGPGEVDDELEEEVGSECGKYGTVTRVLIFEITQPNFPTHE-AVRIFVQ 316
+ + V++LRNMV P ++DD+LE EV ECGK+G V RV+I++ Q E V+IFV+
Sbjct: 430 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVE 489
Query: 315 FSRPEETTKALVDLDGRFFGGRTVRATFYDESKFSKNELA 196
FS ET KA+ DL+GR+F GR V A YD+ +F ++L+
Sbjct: 490 FSVASETHKAIQDLNGRWFAGRKVVAEVYDQERFDNSDLS 529
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus
GN=Puf60 PE=2 SV=2
Length = 564
Score = 93 bits (229), Expect = 4e-018
Identities = 47/100 (47%), Positives = 68/100 (68%), Gaps = 1/100 (1%)
Frame = -1
Query: 492 EPTRVLLLRNMVGPGEVDDELEEEVGSECGKYGTVTRVLIFEITQPNFPTHE-AVRIFVQ 316
+ + V++LRNMV P ++DD+LE EV ECGK+G V RV+I++ Q E V+IFV+
Sbjct: 464 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVE 523
Query: 315 FSRPEETTKALVDLDGRFFGGRTVRATFYDESKFSKNELA 196
FS ET KA+ L+GR+FGGR V A YD+ +F ++L+
Sbjct: 524 FSMASETHKAIQALNGRWFGGRKVVAEVYDQERFDNSDLS 563
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus
GN=Puf60 PE=2 SV=2
Length = 564
Score = 93 bits (229), Expect = 4e-018
Identities = 47/100 (47%), Positives = 68/100 (68%), Gaps = 1/100 (1%)
Frame = -1
Query: 492 EPTRVLLLRNMVGPGEVDDELEEEVGSECGKYGTVTRVLIFEITQPNFPTHE-AVRIFVQ 316
+ + V++LRNMV P ++DD+LE EV ECGK+G V RV+I++ Q E V+IFV+
Sbjct: 464 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVE 523
Query: 315 FSRPEETTKALVDLDGRFFGGRTVRATFYDESKFSKNELA 196
FS ET KA+ L+GR+FGGR V A YD+ +F ++L+
Sbjct: 524 FSMASETHKAIQALNGRWFGGRKVVAEVYDQERFDNSDLS 563
>sp|Q8T6B9|PUF68_DROME Poly(U)-binding-splicing factor half pint OS=Drosophila
melanogaster GN=pUf68 PE=1 SV=2
Length = 637
Score = 92 bits (228), Expect = 6e-018
Identities = 50/101 (49%), Positives = 67/101 (66%), Gaps = 4/101 (3%)
Frame = -1
Query: 486 TRVLLLRNMVGPGEVDDELEEEVGSECGKYGTVTRVLIFEITQ-PNFPTHEA---VRIFV 319
+RV++LRNMVGP +VD+ L+EE+ EC K+GTV+RV+IF Q N EA V+IFV
Sbjct: 536 SRVIILRNMVGPEDVDETLQEEIQEECSKFGTVSRVIIFNEKQTENEDDDEAEIIVKIFV 595
Query: 318 QFSRPEETTKALVDLDGRFFGGRTVRATFYDESKFSKNELA 196
+FS E + LDGRFFGGR V A YD+ F + +L+
Sbjct: 596 EFSAGAEAMRGKEALDGRFFGGRRVVAELYDQGIFDQGDLS 636
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens
GN=PUF60 PE=1 SV=1
Length = 559
Score = 90 bits (221), Expect = 4e-017
Identities = 46/100 (46%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Frame = -1
Query: 492 EPTRVLLLRNMVGPGEVDDELEEEVGSECGKYGTVTRVLIFEITQPNFPTHE-AVRIFVQ 316
+ + V++LRNMV P ++DD+LE EV ECGK+G V RV+I++ Q E V+IFV+
Sbjct: 459 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVE 518
Query: 315 FSRPEETTKALVDLDGRFFGGRTVRATFYDESKFSKNELA 196
FS ET KA+ L+GR+F GR V A YD+ +F ++L+
Sbjct: 519 FSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLS 558
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii
GN=PUF60 PE=2 SV=1
Length = 558
Score = 90 bits (221), Expect = 4e-017
Identities = 46/100 (46%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Frame = -1
Query: 492 EPTRVLLLRNMVGPGEVDDELEEEVGSECGKYGTVTRVLIFEITQPNFPTHE-AVRIFVQ 316
+ + V++LRNMV P ++DD+LE EV ECGK+G V RV+I++ Q E V+IFV+
Sbjct: 458 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVE 517
Query: 315 FSRPEETTKALVDLDGRFFGGRTVRATFYDESKFSKNELA 196
FS ET KA+ L+GR+F GR V A YD+ +F ++L+
Sbjct: 518 FSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLS 557
>sp|Q6IQE0|PU60B_DANRE Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio
GN=puf60b PE=2 SV=2
Length = 516
Score = 89 bits (220), Expect = 5e-017
Identities = 46/95 (48%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
Frame = -1
Query: 480 VLLLRNMVGPGEVDDELEEEVGSECGKYGTVTRVLIFEITQPNFPTHE-AVRIFVQFSRP 304
V++LRNMVGP ++DD+LE EV ECGKYG V RV+I++ Q E V+IFV+FS
Sbjct: 420 VMVLRNMVGPEDIDDDLEGEVMEECGKYGAVNRVIIYQERQGEEDDAEIIVKIFVEFSDA 479
Query: 303 EETTKALVDLDGRFFGGRTVRATFYDESKFSKNEL 199
E KA+ L+ R+F GR V A YD+ +F+ ++L
Sbjct: 480 GEMNKAIQALNNRWFAGRKVVAELYDQDRFNSSDL 514
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa
subsp. japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 62 bits (149), Expect = 8e-009
Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 7/133 (5%)
Frame = -1
Query: 585 AKKTDRRAGVIVNASEKKVVAAVVKGVNISGEPTRVLLLRNMVGPGEVDDELE-----EE 421
A+ + +++ A ++ + +V + PT+V+ L +V E+ D+ E E+
Sbjct: 415 AQPRPEQESILLQAQQQVQLQKLV--YQVGALPTKVVCLTQVVSADELKDDEEYEDIMED 472
Query: 420 VGSECGKYGTVTRVLIFEITQPNFPTHEAVRIFVQFSRPEETTKALVDLDGRFFGGRTVR 241
+ E GKYG + +V+I P ++F++++ + TKA + GR FGG V
Sbjct: 473 MRLEAGKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAKTAMHGRKFGGNPVV 532
Query: 240 ATFYDESKFSKNE 202
A FY E+KFS E
Sbjct: 533 AVFYPENKFSSAE 545
>sp|Q54PM6|Y8605_DICDI Uncharacterized protein DDB_G0284459 OS=Dictyostelium
discoideum GN=DDB_G0284459 PE=4 SV=1
Length = 1224
Score = 56 bits (134), Expect = 4e-007
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 2/130 (1%)
Frame = -1
Query: 1254 NSSSSSVWSSSTKMAPPTLRKPPAFAPTQTIIRPQSKPKPQYKPPPPPPPPTQSIITPAP 1075
+SSSSS SSS+ + + + + T T I+ + P P P PPPPP Q P P
Sbjct: 690 SSSSSSSSSSSSSSSSSSSSSSSSSSTTSTKIKKEEPPPP--PPQQPPPPPPQQPPPPPP 747
Query: 1074 PSQPALVGVTSSVIEEYDPARPNDYEEYRREKKKKAMEAEMKRELDKRRREEEEREEMEK 895
P P V I E + + R + + R+ D R + + ++
Sbjct: 748 PINPFSVSEHDKKIIEKETGKDLGSSRDRDNSSRTTNGRDSDRDRDSREGSRDRDRDRDR 807
Query: 894 KKERERERER 865
++R+R+R+R
Sbjct: 808 DRDRDRDRDR 817
>sp|P49756|RBM25_HUMAN RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE=1
SV=3
Length = 843
Score = 52 bits (123), Expect = 8e-006
Identities = 25/61 (40%), Positives = 37/61 (60%)
Frame = -1
Query: 1047 TSSVIEEYDPARPNDYEEYRREKKKKAMEAEMKRELDKRRREEEEREEMEKKKERERERE 868
T +EE + + +E +E++++ E E +RE +R RE E E EK+KERERERE
Sbjct: 287 THKKLEEEKGKKEKERQEIEKERRERERERERERERREREREREREREREKEKERERERE 346
Query: 867 R 865
R
Sbjct: 347 R 347
>sp|B2RY56|RBM25_MOUSE RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE=1
SV=1
Length = 841
Score = 52 bits (123), Expect = 8e-006
Identities = 25/61 (40%), Positives = 37/61 (60%)
Frame = -1
Query: 1047 TSSVIEEYDPARPNDYEEYRREKKKKAMEAEMKRELDKRRREEEEREEMEKKKERERERE 868
T +EE + + +E +E++++ E E +RE +R RE E E EK+KERERERE
Sbjct: 289 THKKLEEEKGKKEKERQEIEKERRERERERERERERREREREREREREREKEKERERERE 348
Query: 867 R 865
R
Sbjct: 349 R 349
>sp|Q4KMP7|TB10B_HUMAN TBC1 domain family member 10B OS=Homo sapiens GN=TBC1D10B
PE=1 SV=3
Length = 808
Score = 52 bits (123), Expect = 8e-006
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Frame = -1
Query: 1122 PPPPPPPTQSIITPAPPSQPALVGVTSSVIEEYDPARP--NDYEEYRREKKKKAMEAEMK 949
P PPPP ++ PAP G+ S+ + P + E ++EK+++ E E +
Sbjct: 677 PSPPPPVRRASAGPAPGPVVTAEGLHPSLPSPTGNSTPLGSSKETRKQEKERQKQEKERQ 736
Query: 948 RELDKRRREEEEREEMEKKKERERERERFDHHQTPLNISGEEAWKRRAAMSGGKRGRSSS 769
++ +R +E +++E+ +K+E+ERE++ + + G + RR A
Sbjct: 737 KQEKEREKERQKQEKEREKQEKEREKQEKERQKQEKKAQGRKLSLRRKA--------DGP 788
Query: 768 PPPHAG 751
P PH G
Sbjct: 789 PGPHDG 794
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,323,427,680
Number of Sequences: 518415
Number of Extensions: 116323427680
Number of Successful Extensions: 743337835
Number of sequences better than 0.0: 0
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