BLASTX 7.6.2
Query= UN28504 /QuerySize=1399
(1398 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G76460.1 | Symbols: | RNA recognition motif (... 496 2e-140
TAIR9_protein||AT1G20880.1 | Symbols: | RNA recognition motif (... 382 3e-106
TAIR9_protein||AT1G78260.1 | Symbols: | RNA recognition motif (... 169 3e-042
TAIR9_protein||AT1G78260.2 | Symbols: | RNA recognition motif (... 169 3e-042
TAIR9_protein||AT1G22330.1 | Symbols: | RNA binding / nucleic a... 162 7e-040
TAIR9_protein||AT2G46780.1 | Symbols: | RNA binding / nucleic a... 160 3e-039
TAIR9_protein||AT1G22910.2 | Symbols: | RNA recognition motif (... 159 5e-039
TAIR9_protein||AT1G22910.1 | Symbols: | RNA recognition motif (... 159 5e-039
TAIR9_protein||AT1G22910.3 | Symbols: | RNA recognition motif (... 159 5e-039
TAIR9_protein||AT3G54770.1 | Symbols: | RNA recognition motif (... 156 4e-038
TAIR9_protein||AT1G33470.2 | Symbols: | RNA recognition motif (... 156 5e-038
TAIR9_protein||AT1G33470.1 | Symbols: | RNA recognition motif (... 155 7e-038
TAIR9_protein||AT5G11412.1 | Symbols: | nucleic acid binding / ... 124 2e-028
TAIR9_protein||AT5G53680.1 | Symbols: | RNA recognition motif (... 106 6e-023
TAIR9_protein||AT3G06970.1 | Symbols: | RNA binding / nucleic a... 101 1e-021
TAIR9_protein||AT3G54770.2 | Symbols: | RNA recognition motif (... 100 3e-021
TAIR9_protein||AT5G53720.1 | Symbols: | RNA recognition motif (... 93 4e-019
TAIR9_protein||AT3G15010.1 | Symbols: | RNA recognition motif (... 79 8e-015
TAIR9_protein||AT3G15010.2 | Symbols: | RNA recognition motif (... 79 8e-015
TAIR9_protein||AT2G41060.1 | Symbols: | RNA recognition motif (... 76 4e-014
>TAIR9_protein||AT1G76460.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:28686932-28688506 REVERSE
Length = 286
Score = 496 bits (1276), Expect = 2e-140
Identities = 246/282 (87%), Positives = 259/282 (91%), Gaps = 9/282 (3%)
Frame = +3
Query: 465 SGFHYLNSPFGDTTYTKVFVGGLAWETQSEALRRHFEQYGDILEAVVIADKNTGRSKGYG 644
SGFHYLNSPFGDTT+TKVFVGGLAWETQSE LR+HFEQYG+ILEAVVIADKNTGRSKGYG
Sbjct: 9 SGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYG 68
Query: 645 FVTFRDPEAARRACADPTPVIDGRRANCNLASLGRPRPPLPYAFMIPNMPGRLRPASPYI 824
FVTFRDPEAARRACADPTP+IDGRRANCNLASLGRPRPPLPYA +IPNMPGRLRPASPYI
Sbjct: 69 FVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYA-VIPNMPGRLRPASPYI 127
Query: 825 GNVQAPRGSLFGNYQYQQQPLPYNYQQGLVYPPYGVAAYGPEYMHTQSQGLYGPPYMGQQ 1004
GNVQ PRGSL GNY Y QQPLPYNYQQG+VY PYGV AYGPEYM++QSQGLY PYMGQQ
Sbjct: 128 GNVQGPRGSLIGNYPY-QQPLPYNYQQGVVY-PYGVTAYGPEYMYSQSQGLYS-PYMGQQ 184
Query: 1005 YLQVYGVPGAVNTPVYQYGQLSQTVPGGQSYAAVQGYSVPGSHVLQLGGGPTVSAMATSS 1184
YLQVYGVPGAVN+PVYQYGQLSQT+P G Y AVQGYSVPGSH+LQL GGPTVS M TSS
Sbjct: 185 YLQVYGVPGAVNSPVYQYGQLSQTIPNGHGYTAVQGYSVPGSHILQL-GGPTVSTMTTSS 243
Query: 1185 MPPALQAPYP---PGPAPAQSHIIVHPPQFMQSSSSDQTTSY 1301
M PALQAPYP PGPAP QSHIIVH PQFMQS++SDQTTSY
Sbjct: 244 M-PALQAPYPSGIPGPAPVQSHIIVHSPQFMQSTASDQTTSY 284
>TAIR9_protein||AT1G20880.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:7262879-7264834 REVERSE
Length = 275
Score = 382 bits (980), Expect = 3e-106
Identities = 185/244 (75%), Positives = 207/244 (84%), Gaps = 4/244 (1%)
Frame = +3
Query: 465 SGFHYLNSPFGDTTYTKVFVGGLAWETQSEALRRHFEQYGDILEAVVIADKNTGRSKGYG 644
SGFHYLNSPFGDTT+TKVFVGGLAWETQSE LRRHF+QYGDILEAVVI DKNTGRSKGYG
Sbjct: 9 SGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYG 68
Query: 645 FVTFRDPEAARRACADPTPVIDGRRANCNLASLGRPRPPLPYAFMIPNMPGRLRPASPYI 824
FVTFRDPEAARRAC DPTP+IDGRRANCNLASLGR RPP+ YA +IP+ PGR+RP SPY+
Sbjct: 69 FVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYA-VIPHAPGRVRPPSPYV 127
Query: 825 GNVQAPRGSLFGNYQYQQQPLPYNYQQGLVYPPYGVAAYGPEYMHTQSQGLYGPPYMGQQ 1004
G+VQ+PRG FG++ Y Q P YNYQQG+VY PYGV YGP+YM++QSQG YG PYMGQQ
Sbjct: 128 GSVQSPRGLHFGSHPYHQPP-TYNYQQGVVY-PYGVTPYGPDYMYSQSQGFYG-PYMGQQ 184
Query: 1005 YLQVYGVPGAVNTPVYQYGQLSQTVPGGQSYAAVQGYSVPGSHVLQLGGGPTVSAMATSS 1184
YLQVYGVPGAVN+P YQYGQLS T+PG Y A QGYS PGSHVLQLG +SA+ +
Sbjct: 185 YLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLGATSPMSAIQSPY 244
Query: 1185 MPPA 1196
P+
Sbjct: 245 PSPS 248
>TAIR9_protein||AT1G78260.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:29447317-29450181 FORWARD
Length = 288
Score = 169 bits (428), Expect = 3e-042
Identities = 90/176 (51%), Positives = 110/176 (62%), Gaps = 12/176 (6%)
Frame = +3
Query: 477 YLNSPFGDTTYTKVFVGGLAWETQSEALRRHFEQYGDILEAVVIADKNTGRSKGYGFVTF 656
Y SPFGDTTYTKVFVGGLAWET ++ +RR+FEQ+G+ILEAV+I DKNTG+SKGYGFVTF
Sbjct: 6 YYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65
Query: 657 RDPEAARRACADPTPVIDGRRANCNLASLGRPRPPLPYAFMIPNMPGRLRPASP--YIGN 830
R+ ++A RA ADP PVIDGR+ANCN+AS GRPRP P P + + P Y G
Sbjct: 66 RESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSGGPSTYTGM 125
Query: 831 V-----QAPRGSLFGNYQYQQQPLPYNYQQGLVYPPYGVAAYGPEYMHTQSQGLYG 983
A ++ +Y Y P + Y Q L A Y + Q Q LYG
Sbjct: 126 AAPLPPAAAPQLMYPSYGYTYNPDQFGYHQALYNTQLQQAQY-----YQQQQQLYG 176
>TAIR9_protein||AT1G78260.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:29447317-29449246 FORWARD
Length = 272
Score = 169 bits (428), Expect = 3e-042
Identities = 90/176 (51%), Positives = 110/176 (62%), Gaps = 12/176 (6%)
Frame = +3
Query: 477 YLNSPFGDTTYTKVFVGGLAWETQSEALRRHFEQYGDILEAVVIADKNTGRSKGYGFVTF 656
Y SPFGDTTYTKVFVGGLAWET ++ +RR+FEQ+G+ILEAV+I DKNTG+SKGYGFVTF
Sbjct: 6 YYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTF 65
Query: 657 RDPEAARRACADPTPVIDGRRANCNLASLGRPRPPLPYAFMIPNMPGRLRPASP--YIGN 830
R+ ++A RA ADP PVIDGR+ANCN+AS GRPRP P P + + P Y G
Sbjct: 66 RESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSGGPSTYTGM 125
Query: 831 V-----QAPRGSLFGNYQYQQQPLPYNYQQGLVYPPYGVAAYGPEYMHTQSQGLYG 983
A ++ +Y Y P + Y Q L A Y + Q Q LYG
Sbjct: 126 AAPLPPAAAPQLMYPSYGYTYNPDQFGYHQALYNTQLQQAQY-----YQQQQQLYG 176
>TAIR9_protein||AT1G22330.1 | Symbols: | RNA binding / nucleic acid binding /
nucleotide binding | chr1:7886693-7889241 FORWARD
Length = 292
Score = 162 bits (408), Expect = 7e-040
Identities = 83/173 (47%), Positives = 104/173 (60%), Gaps = 2/173 (1%)
Frame = +3
Query: 462 VSGFHYLNSPFGDTTYTKVFVGGLAWETQSEALRRHFEQYGDILEAVVIADKNTGRSKGY 641
+S Y SPFGDTT+TKVFVGGLAWET ++ +RR+F+Q+G+ILEAV+I DK TG+SKGY
Sbjct: 1 MSNTSYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGY 60
Query: 642 GFVTFRDPEAARRACADPTPVIDGRRANCNLASLGRPRPPLPYAFMIPNMPGRLRPA--S 815
GFVTFRD ++A RA ADP PVIDGR+ANCN+AS GRPRP P P + + S
Sbjct: 61 GFVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGGGQS 120
Query: 816 PYIGNVQAPRGSLFGNYQYQQQPLPYNYQQGLVYPPYGVAAYGPEYMHTQSQG 974
Y G + + Y YN + G Y +Y Q G
Sbjct: 121 SYTGMAAPVQQAAAAQLMYPSYGYTYNSEYGYHQALYNAQLQQAQYYQQQMYG 173
>TAIR9_protein||AT2G46780.1 | Symbols: | RNA binding / nucleic acid binding /
nucleotide binding | chr2:19229516-19231043 FORWARD
Length = 337
Score = 160 bits (403), Expect = 3e-039
Identities = 102/223 (45%), Positives = 127/223 (56%), Gaps = 23/223 (10%)
Frame = +3
Query: 483 NSPFGDTTYTKVFVGGLAWETQSEALRRHFEQYGDILEAVVIADKNTGRSKGYGFVTFRD 662
N+ DT TK+FVGGLAWETQ + +RR+FEQ+G+I+EAVVI DKNTGRSKGYGFVTF++
Sbjct: 13 NNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKE 72
Query: 663 PEAARRACADPTPVIDGRRANCNLASLG--RPRPPLPYAFMIPNMPGRLRPASPYIGNVQ 836
EAA RAC + PVIDGRRANCNLA LG +PRPP + GR R +G V
Sbjct: 73 AEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSPR----HGTGRFRSPGSGVGLV- 127
Query: 837 AP----RGSLFGNYQYQQQPLPYNYQQGLVYPPYGVAAYGPEYMHTQ---SQGLYGPPYM 995
AP RGS + QQ + Q Y YG + Y E M+ + LYG
Sbjct: 128 APSPQFRGSSSSSAFVHQQQQQHTAQFPFPYSTYGFSGYSQEGMYPMNYYNHHLYG---- 183
Query: 996 GQQYLQVYGVPGAVNTPVYQ-----YGQLSQTVPGGQSYAAVQ 1109
GQQ+ G P A +T ++ Y Q + Q+ A VQ
Sbjct: 184 GQQFSPYMGHPSAGSTGMFHGFYPYYPQYNAAQSSNQAQAQVQ 226
>TAIR9_protein||AT1G22910.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:8105808-8107618 FORWARD
Length = 243
Score = 159 bits (401), Expect = 5e-039
Identities = 96/190 (50%), Positives = 113/190 (59%), Gaps = 24/190 (12%)
Frame = +3
Query: 495 GDTTYTKVFVGGLAWETQSEALRRHFEQYGDILEAVVIADKNTGRSKGYGFVTFRDPEAA 674
GDTTYTKVFVGGLAWET E +++HFEQ+G+ILEAVVI DK +GRSKGYGFVTFR+ EAA
Sbjct: 8 GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67
Query: 675 RRACADPTPVIDGRRANCNLASLG--RPRPPLPY---AFMIPNMPGRLRPASPYIGNVQA 839
R AC D TPVIDGRRANCNLASLG R +P P I NM + G
Sbjct: 68 RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMSTMQTGFGPPPP 127
Query: 840 PRGSLFGNYQYQQQPLPYNYQQGLVYPPYGVAAYGPEY--MHTQSQGLYGPPYMGQQYLQ 1013
P+ F +Y + LP N +G + Y P+Y T G+YG GQ
Sbjct: 128 PQPPTFTHYPH----LPLNL--------FGYSPYSPDYSSFPTNLYGMYGCTSGGQ---- 171
Query: 1014 VYGVPGAVNT 1043
YGV G N+
Sbjct: 172 -YGVYGNRNS 180
>TAIR9_protein||AT1G22910.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:8105808-8107659 FORWARD
Length = 250
Score = 159 bits (401), Expect = 5e-039
Identities = 96/190 (50%), Positives = 113/190 (59%), Gaps = 24/190 (12%)
Frame = +3
Query: 495 GDTTYTKVFVGGLAWETQSEALRRHFEQYGDILEAVVIADKNTGRSKGYGFVTFRDPEAA 674
GDTTYTKVFVGGLAWET E +++HFEQ+G+ILEAVVI DK +GRSKGYGFVTFR+ EAA
Sbjct: 8 GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67
Query: 675 RRACADPTPVIDGRRANCNLASLG--RPRPPLPY---AFMIPNMPGRLRPASPYIGNVQA 839
R AC D TPVIDGRRANCNLASLG R +P P I NM + G
Sbjct: 68 RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMSTMQTGFGPPPP 127
Query: 840 PRGSLFGNYQYQQQPLPYNYQQGLVYPPYGVAAYGPEY--MHTQSQGLYGPPYMGQQYLQ 1013
P+ F +Y + LP N +G + Y P+Y T G+YG GQ
Sbjct: 128 PQPPTFTHYPH----LPLNL--------FGYSPYSPDYSSFPTNLYGMYGCTSGGQ---- 171
Query: 1014 VYGVPGAVNT 1043
YGV G N+
Sbjct: 172 -YGVYGNRNS 180
>TAIR9_protein||AT1G22910.3 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:8105808-8107949 FORWARD
Length = 348
Score = 159 bits (401), Expect = 5e-039
Identities = 96/190 (50%), Positives = 113/190 (59%), Gaps = 24/190 (12%)
Frame = +3
Query: 495 GDTTYTKVFVGGLAWETQSEALRRHFEQYGDILEAVVIADKNTGRSKGYGFVTFRDPEAA 674
GDTTYTKVFVGGLAWET E +++HFEQ+G+ILEAVVI DK +GRSKGYGFVTFR+ EAA
Sbjct: 8 GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67
Query: 675 RRACADPTPVIDGRRANCNLASLG--RPRPPLPY---AFMIPNMPGRLRPASPYIGNVQA 839
R AC D TPVIDGRRANCNLASLG R +P P I NM + G
Sbjct: 68 RSACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMSTMQTGFGPPPP 127
Query: 840 PRGSLFGNYQYQQQPLPYNYQQGLVYPPYGVAAYGPEY--MHTQSQGLYGPPYMGQQYLQ 1013
P+ F +Y + LP N +G + Y P+Y T G+YG GQ
Sbjct: 128 PQPPTFTHYPH----LPLNL--------FGYSPYSPDYSSFPTNLYGMYGCTSGGQ---- 171
Query: 1014 VYGVPGAVNT 1043
YGV G N+
Sbjct: 172 -YGVYGNRNS 180
>TAIR9_protein||AT3G54770.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:20273863-20275827 REVERSE
Length = 262
Score = 156 bits (393), Expect = 4e-038
Identities = 94/197 (47%), Positives = 113/197 (57%), Gaps = 11/197 (5%)
Frame = +3
Query: 480 LNSPFGDTTYTKVFVGGLAWETQSEALRRHFEQYGDILEAVVIADKNTGRSKGYGFVTFR 659
+N FGDT TKVFVGGLAW+T EA+ HF +YGDILEAV+I+DK T RSKGYGFVTF+
Sbjct: 7 VNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFK 66
Query: 660 DPEAARRACADPTPVIDGRRANCNLASLG---RPRPPLPYAFMIPNMPGRLRPASPYIGN 830
D +AA RAC D TP+I+GRRANCNLASLG R P + P R P P++GN
Sbjct: 67 DAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGNRATP--PHVGN 124
Query: 831 -VQAPRGSLFGNYQYQQQPLPYNYQQGLVYPPYGVAAYGPEYMHTQSQGLYGPPYMGQQY 1007
Q S F N Q+QQQ Q + + Y A P Q G G YM Y
Sbjct: 125 HSQWYYPSGFTNQQHQQQ-----NHQAVPFYGYPSAYVAPNMTFNQKVGYVGGTYMNGYY 179
Query: 1008 LQVYGVPGAVNTPVYQY 1058
Q+ P + P Y +
Sbjct: 180 AQMQPQPQSQPQPQYYH 196
>TAIR9_protein||AT1G33470.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:12144632-12146040 FORWARD
Length = 245
Score = 156 bits (392), Expect = 5e-038
Identities = 101/250 (40%), Positives = 140/250 (56%), Gaps = 31/250 (12%)
Frame = +3
Query: 498 DTTYTKVFVGGLAWETQSEALRRHFEQYGDILEAVVIADKNTGRSKGYGFVTFRDPEAAR 677
DTT+TKVFVGGLAWET +LR +FEQ+GDI+EAVVI DK++GRSKGYGFVTF DPEAA+
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 678 RACADPTPVIDGRRANCNLASLG--RPRPPLPYAFMIPNMPGR-LRPASPYIGNVQAPRG 848
+AC DP PVIDGRRANCNLA+ G R +P P + ++ GR ++ SP+ +
Sbjct: 63 KACVDPAPVIDGRRANCNLAAFGVQRSKPSSP---IHGHVGGRGMKVTSPFKTHFGTAAT 119
Query: 849 SLFGNYQYQQQPLPYNYQQGLVYPPYGVAAYGPEYMH-TQSQGLYG------PPYMGQQY 1007
++ PLP+++ P+G ++Y +Y + T +YG P Y
Sbjct: 120 AI-------PSPLPFSHYTLPYTNPFGFSSYSMDYNYPTSYYNVYGGATAQHPMYGSGPM 172
Query: 1008 LQVYGVPGAVNTPVYQYGQLSQTVPGGQSYAAVQ------GYSVPGSHVLQLGGGPTVSA 1169
V P A P Q+ + + V G YA + YS PG + G P +
Sbjct: 173 TGVAAAPAAGFYPYLQFAEGNGPVTG---YAPLHYPNHMFHYSAPGGNYPHHNGSPV--S 227
Query: 1170 MATSSMPPAL 1199
+A S + P++
Sbjct: 228 LAPSPVIPSV 237
>TAIR9_protein||AT1G33470.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:12144632-12146040 FORWARD
Length = 246
Score = 155 bits (391), Expect = 7e-038
Identities = 103/251 (41%), Positives = 142/251 (56%), Gaps = 32/251 (12%)
Frame = +3
Query: 498 DTTYTKVFVGGLAWETQSEALRRHFEQYGDILEAVVIADKNTGRSKGYGFVTFRDPEAAR 677
DTT+TKVFVGGLAWET +LR +FEQ+GDI+EAVVI DK++GRSKGYGFVTF DPEAA+
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 678 RACADPTPVIDGRRANCNLASLG--RPRPPLPYAFMIPNMPGR-LRPASPYIGNVQAPRG 848
+AC DP PVIDGRRANCNLA+ G R +P P + ++ GR ++ SP+ +
Sbjct: 63 KACVDPAPVIDGRRANCNLAAFGVQRSKPSSP---IHGHVGGRGMKVTSPFKTHFGTAAT 119
Query: 849 SLFGNYQYQQQPLPYNYQQGLVYPPYGVAAYGPEYMH-TQS-QGLYG------PPYMGQQ 1004
++ PLP+++ P+G ++Y +Y + TQS +YG P Y
Sbjct: 120 AI-------PSPLPFSHYTLPYTNPFGFSSYSMDYNYPTQSYYNVYGGATAQHPMYGSGP 172
Query: 1005 YLQVYGVPGAVNTPVYQYGQLSQTVPGGQSYAAVQ------GYSVPGSHVLQLGGGPTVS 1166
V P A P Q+ + + V G YA + YS PG + G P
Sbjct: 173 MTGVAAAPAAGFYPYLQFAEGNGPVTG---YAPLHYPNHMFHYSAPGGNYPHHNGSPV-- 227
Query: 1167 AMATSSMPPAL 1199
++A S + P++
Sbjct: 228 SLAPSPVIPSV 238
>TAIR9_protein||AT5G11412.1 | Symbols: | nucleic acid binding / nucleotide
binding | chr5:3640349-3640876 REVERSE
Length = 176
Score = 124 bits (310), Expect = 2e-028
Identities = 56/91 (61%), Positives = 70/91 (76%), Gaps = 1/91 (1%)
Frame = +3
Query: 474 HYLNSPFGDTTYTKVFVGGLAWETQSEALRRHFEQYGDILEAVVIADKNTGRSKGYGFVT 653
HY N DT YTK++VGGL WET++E LR +FEQ+GDI+ ++ D+ TGRS+GYGFVT
Sbjct: 41 HYANENV-DTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVT 99
Query: 654 FRDPEAARRACADPTPVIDGRRANCNLASLG 746
FRD E+A RAC +P PVIDGR A CNLA +G
Sbjct: 100 FRDAESATRACQNPKPVIDGREAKCNLAYIG 130
>TAIR9_protein||AT5G53680.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:21798382-21799109 FORWARD
Length = 170
Score = 106 bits (262), Expect = 6e-023
Identities = 46/88 (52%), Positives = 62/88 (70%)
Frame = +3
Query: 498 DTTYTKVFVGGLAWETQSEALRRHFEQYGDILEAVVIADKNTGRSKGYGFVTFRDPEAAR 677
DTT+TK++VGGL W T+ E L F+++G+I+ V+ D+ T RS+GYGFVTF+D E+A
Sbjct: 9 DTTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESAT 68
Query: 678 RACADPTPVIDGRRANCNLASLGRPRPP 761
RAC DP P I+GR NC LA +G P
Sbjct: 69 RACKDPNPTIEGRITNCKLAFVGAKVKP 96
>TAIR9_protein||AT3G06970.1 | Symbols: | RNA binding / nucleic acid binding /
nucleotide binding | chr3:2199653-2201150 REVERSE
Length = 318
Score = 101 bits (251), Expect = 1e-021
Identities = 56/140 (40%), Positives = 79/140 (56%), Gaps = 6/140 (4%)
Frame = +3
Query: 498 DTTYTKVFVGGLAWETQSEALRRHFEQYGDILEAVVIADKNTGRSKGYGFVTFRDPEAAR 677
DT TK+FVG L W T ++ LRR+FEQ+G +++A V+++ GRSKGYGF+TFRD +
Sbjct: 8 DTRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTV 67
Query: 678 RACADPTPVIDGRRANCNLASLGRPR----PPLPYAFMIPNMPGRLRPASPYIGNVQAPR 845
RA + P+IDGR NCNLAS G + P L +F P + + A ++ P
Sbjct: 68 RALQNSKPIIDGRTTNCNLASAGAKQNMNHPNLNGSFNYVIPPHQYQQAPQHVIPYCPPH 127
Query: 846 --GSLFGNYQYQQQPLPYNY 899
++G Y Y P Y
Sbjct: 128 TWNHVWGQYIYMYNNNPCYY 147
>TAIR9_protein||AT3G54770.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:20273863-20275731 REVERSE
Length = 219
Score = 100 bits (247), Expect = 3e-021
Identities = 49/65 (75%), Positives = 56/65 (86%), Gaps = 1/65 (1%)
Frame = +3
Query: 567 HFEQYGDILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPVIDGRRANCNLASL- 743
HF +YGDILEAV+I+DK T RSKGYGFVTF+D +AA RAC D TP+I+GRRANCNLASL
Sbjct: 4 HFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRANCNLASLG 63
Query: 744 GRPRP 758
GR RP
Sbjct: 64 GRLRP 68
>TAIR9_protein||AT5G53720.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:21806622-21807012 FORWARD
Length = 101
Score = 93 bits (229), Expect = 4e-019
Identities = 43/79 (54%), Positives = 57/79 (72%)
Frame = +3
Query: 510 TKVFVGGLAWETQSEALRRHFEQYGDILEAVVIADKNTGRSKGYGFVTFRDPEAARRACA 689
TK++V GL W T++E L +FE++G+I+ A V+ D T RSKG+GFVTFR+ E+A RAC
Sbjct: 9 TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACE 68
Query: 690 DPTPVIDGRRANCNLASLG 746
+P IDGR NC LA LG
Sbjct: 69 NPNHTIDGRTVNCKLAYLG 87
>TAIR9_protein||AT3G15010.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:5052844-5054058 FORWARD
Length = 405
Score = 79 bits (192), Expect = 8e-015
Identities = 41/83 (49%), Positives = 53/83 (63%)
Frame = +3
Query: 498 DTTYTKVFVGGLAWETQSEALRRHFEQYGDILEAVVIADKNTGRSKGYGFVTFRDPEAAR 677
D + K+F+ GLA +T +E LR F YGD+ EA+VI DK TG+SKGYGFVTF + A
Sbjct: 71 DISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGAL 130
Query: 678 RACADPTPVIDGRRANCNLASLG 746
A +P+ IDGR LA+ G
Sbjct: 131 LALKEPSKKIDGRVTVTQLAASG 153
>TAIR9_protein||AT3G15010.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:5052844-5054058 FORWARD
Length = 405
Score = 79 bits (192), Expect = 8e-015
Identities = 41/83 (49%), Positives = 53/83 (63%)
Frame = +3
Query: 498 DTTYTKVFVGGLAWETQSEALRRHFEQYGDILEAVVIADKNTGRSKGYGFVTFRDPEAAR 677
D + K+F+ GLA +T +E LR F YGD+ EA+VI DK TG+SKGYGFVTF + A
Sbjct: 71 DISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGAL 130
Query: 678 RACADPTPVIDGRRANCNLASLG 746
A +P+ IDGR LA+ G
Sbjct: 131 LALKEPSKKIDGRVTVTQLAASG 153
>TAIR9_protein||AT2G41060.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:17127138-17128493 FORWARD
Length = 452
Score = 76 bits (186), Expect = 4e-014
Identities = 35/83 (42%), Positives = 51/83 (61%)
Frame = +3
Query: 498 DTTYTKVFVGGLAWETQSEALRRHFEQYGDILEAVVIADKNTGRSKGYGFVTFRDPEAAR 677
D + K+FV GL W+T++++L F+QYG+I + + DK +G+SKGYGF+ F+ AR
Sbjct: 124 DLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGAR 183
Query: 678 RACADPTPVIDGRRANCNLASLG 746
A P I R C LAS+G
Sbjct: 184 NALKQPQKKIGTRMTACQLASIG 206
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,841,334,647
Number of Sequences: 33410
Number of Extensions: 14841334647
Number of Successful Extensions: 477290609
Number of sequences better than 0.0: 0
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