BLASTX 7.6.2
Query= UN29705 /QuerySize=877
(876 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|15235876|ref|NP_192535.1| DNA-directed RNA polymerase, subuni... 106 5e-021
gi|297848404|ref|XP_002892083.1| hypothetical protein ARALYDRAFT... 106 5e-021
gi|21553769|gb|AAM62862.1| putative DNA-directed RNA polymerase ... 106 8e-021
gi|15223344|ref|NP_171629.1| DNA-directed RNA polymerase III sub... 102 7e-020
gi|297745506|emb|CBI40586.3| unnamed protein product [Vitis vini... 87 2e-015
gi|225470966|ref|XP_002267122.1| PREDICTED: similar to Os02g0672... 87 3e-015
gi|118431049|ref|NP_147234.2| transcription factor S [Aeropyrum ... 68 1e-009
gi|145591990|ref|YP_001153992.1| transcription termination facto... 68 2e-009
gi|145344997|ref|XP_001417010.1| predicted protein [Ostreococcus... 67 3e-009
gi|171186130|ref|YP_001795049.1| transcription termination facto... 65 1e-008
gi|18313781|ref|NP_560448.1| putative DNA-directed RNA polymeras... 65 2e-008
gi|119871953|ref|YP_929960.1| transcription termination factor T... 65 2e-008
gi|126459602|ref|YP_001055880.1| DNA-directed RNA polymerase, su... 65 2e-008
gi|170290660|ref|YP_001737476.1| DNA-directed RNA polymerase sub... 64 2e-008
gi|221053187|ref|XP_002257968.1| transcription factor [Plasmodiu... 64 3e-008
gi|255072375|ref|XP_002499862.1| predicted protein [Micromonas s... 64 3e-008
>gi|15235876|ref|NP_192535.1| DNA-directed RNA polymerase, subunit M
[Arabidopsis thaliana]
Length = 106
Score = 106 bits (264), Expect = 5e-021
Identities = 51/65 (78%), Positives = 56/65 (86%), Gaps = 3/65 (4%)
Frame = +3
Query: 153 MEFCPTCGNLLRYV---PSQFFCSTCPYIARIERQVEIKKKQLLVKKSIDPVLKKDDIPT 323
MEFCPTCGNLLRY S+FFCSTCPY+A IER+VEIKKKQLLVKKSI+PV+ KDDIPT
Sbjct: 1 MEFCPTCGNLLRYEGGGSSRFFCSTCPYVANIERRVEIKKKQLLVKKSIEPVVTKDDIPT 60
Query: 324 GPETE 338
ETE
Sbjct: 61 AAETE 65
Score = 91 bits (223), Expect = 3e-016
Identities = 38/41 (92%), Positives = 40/41 (97%)
Frame = +1
Query: 553 APCPRCGHDKAYFKTMQIRSADEPESRFYRCVKCEQTWREE 675
APCPRCGHDKAYFK+MQIRSADEPESRFYRC+KCE TWREE
Sbjct: 66 APCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWREE 106
>gi|297848404|ref|XP_002892083.1| hypothetical protein ARALYDRAFT_311313
[Arabidopsis lyrata subsp. lyrata]
Length = 106
Score = 106 bits (264), Expect = 5e-021
Identities = 51/65 (78%), Positives = 56/65 (86%), Gaps = 3/65 (4%)
Frame = +3
Query: 153 MEFCPTCGNLLRYV---PSQFFCSTCPYIARIERQVEIKKKQLLVKKSIDPVLKKDDIPT 323
MEFCPTCGNLLRY S+FFCSTCPY+A +ERQVEIKKKQLLVKKSI+PV+ KDDIPT
Sbjct: 1 MEFCPTCGNLLRYEGSGNSRFFCSTCPYVAYVERQVEIKKKQLLVKKSIEPVVTKDDIPT 60
Query: 324 GPETE 338
ETE
Sbjct: 61 AAETE 65
Score = 89 bits (220), Expect = 6e-016
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = +1
Query: 553 APCPRCGHDKAYFKTMQIRSADEPESRFYRCVKCEQTWREE 675
APCPRCGHDKAYFK+MQIRSADEPESRFYRC+KC+ TWREE
Sbjct: 66 APCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCDFTWREE 106
>gi|21553769|gb|AAM62862.1| putative DNA-directed RNA polymerase subunit
[Arabidopsis thaliana]
Length = 106
Score = 106 bits (262), Expect = 8e-021
Identities = 51/65 (78%), Positives = 56/65 (86%), Gaps = 3/65 (4%)
Frame = +3
Query: 153 MEFCPTCGNLLRYV---PSQFFCSTCPYIARIERQVEIKKKQLLVKKSIDPVLKKDDIPT 323
MEFCPTCGNLLRY S+FFCSTCPY+A IER+VEIKKKQLLVKKSI+PV+ KDDIPT
Sbjct: 1 MEFCPTCGNLLRYEGGGSSRFFCSTCPYVAYIERRVEIKKKQLLVKKSIEPVVTKDDIPT 60
Query: 324 GPETE 338
ETE
Sbjct: 61 AAETE 65
Score = 91 bits (223), Expect = 3e-016
Identities = 38/41 (92%), Positives = 40/41 (97%)
Frame = +1
Query: 553 APCPRCGHDKAYFKTMQIRSADEPESRFYRCVKCEQTWREE 675
APCPRCGHDKAYFK+MQIRSADEPESRFYRC+KCE TWREE
Sbjct: 66 APCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWREE 106
>gi|15223344|ref|NP_171629.1| DNA-directed RNA polymerase III subunit C11
[Arabidopsis thaliana]
Length = 106
Score = 102 bits (254), Expect = 7e-020
Identities = 50/65 (76%), Positives = 55/65 (84%), Gaps = 3/65 (4%)
Frame = +3
Query: 153 MEFCPTCGNLLRYV---PSQFFCSTCPYIARIERQVEIKKKQLLVKKSIDPVLKKDDIPT 323
MEFCPTCGNLLRY S+FFCSTCPY+A I+RQVEIKKKQLLVKKSI+ V+ KDDIPT
Sbjct: 1 MEFCPTCGNLLRYEGGGNSRFFCSTCPYVAYIQRQVEIKKKQLLVKKSIEAVVTKDDIPT 60
Query: 324 GPETE 338
ETE
Sbjct: 61 AAETE 65
Score = 91 bits (223), Expect = 3e-016
Identities = 38/41 (92%), Positives = 40/41 (97%)
Frame = +1
Query: 553 APCPRCGHDKAYFKTMQIRSADEPESRFYRCVKCEQTWREE 675
APCPRCGHDKAYFK+MQIRSADEPESRFYRC+KCE TWREE
Sbjct: 66 APCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWREE 106
>gi|297745506|emb|CBI40586.3| unnamed protein product [Vitis vinifera]
Length = 175
Score = 87 bits (215), Expect = 2e-015
Identities = 38/71 (53%), Positives = 50/71 (70%), Gaps = 6/71 (8%)
Frame = +3
Query: 144 VNNMEFCPTCGNLLRYV------PSQFFCSTCPYIARIERQVEIKKKQLLVKKSIDPVLK 305
+ MEFCPTCGN L+Y P++FFC TCPY+ IE +V+IK+KQ LVKK I+P+
Sbjct: 62 LQQMEFCPTCGNFLQYELPHMGRPARFFCPTCPYVCHIETKVKIKRKQRLVKKEIEPIFS 121
Query: 306 KDDIPTGPETE 338
KDD+ GP T+
Sbjct: 122 KDDMKNGPTTD 132
>gi|225470966|ref|XP_002267122.1| PREDICTED: similar to Os02g0672700 [Vitis
vinifera]
Length = 111
Score = 87 bits (214), Expect = 3e-015
Identities = 38/68 (55%), Positives = 49/68 (72%), Gaps = 6/68 (8%)
Frame = +3
Query: 153 MEFCPTCGNLLRYV------PSQFFCSTCPYIARIERQVEIKKKQLLVKKSIDPVLKKDD 314
MEFCPTCGN L+Y P++FFC TCPY+ IE +V+IK+KQ LVKK I+P+ KDD
Sbjct: 1 MEFCPTCGNFLQYELPHMGRPARFFCPTCPYVCHIETKVKIKRKQRLVKKEIEPIFSKDD 60
Query: 315 IPTGPETE 338
+ GP T+
Sbjct: 61 MKNGPTTD 68
>gi|118431049|ref|NP_147234.2| transcription factor S [Aeropyrum pernix K1]
Length = 118
Score = 68 bits (165), Expect = 1e-009
Identities = 27/41 (65%), Positives = 31/41 (75%)
Frame = +1
Query: 550 SAPCPRCGHDKAYFKTMQIRSADEPESRFYRCVKCEQTWRE 672
S CP+CGHD+ YF MQ RSADEP +RFYRC +C TWRE
Sbjct: 76 SVTCPKCGHDEVYFWMMQTRSADEPMTRFYRCKRCRYTWRE 116
>gi|145591990|ref|YP_001153992.1| transcription termination factor Tfs
[Pyrobaculum arsenaticum DSM 13514]
Length = 110
Score = 68 bits (164), Expect = 2e-009
Identities = 26/38 (68%), Positives = 30/38 (78%)
Frame = +1
Query: 559 CPRCGHDKAYFKTMQIRSADEPESRFYRCVKCEQTWRE 672
CP+CGHD+AYF Q R+ADEP +RFYRC KC TWRE
Sbjct: 71 CPKCGHDEAYFWVQQTRAADEPPTRFYRCTKCGHTWRE 108
>gi|145344997|ref|XP_001417010.1| predicted protein [Ostreococcus lucimarinus
CCE9901]
Length = 120
Score = 67 bits (162), Expect = 3e-009
Identities = 28/41 (68%), Positives = 32/41 (78%)
Frame = +1
Query: 550 SAPCPRCGHDKAYFKTMQIRSADEPESRFYRCVKCEQTWRE 672
SA CP C HD+AYF +QIRSADEP S FY+CVKC + WRE
Sbjct: 79 SATCPGCAHDEAYFMQIQIRSADEPMSVFYKCVKCARQWRE 119
>gi|171186130|ref|YP_001795049.1| transcription termination factor Tfs
[Thermoproteus neutrophilus V24Sta]
Length = 110
Score = 65 bits (157), Expect = 1e-008
Identities = 25/38 (65%), Positives = 29/38 (76%)
Frame = +1
Query: 559 CPRCGHDKAYFKTMQIRSADEPESRFYRCVKCEQTWRE 672
CP+CGHD+AY Q R+ADEP +RFYRC KC TWRE
Sbjct: 71 CPKCGHDEAYVWVQQTRAADEPPTRFYRCTKCGHTWRE 108
>gi|18313781|ref|NP_560448.1| putative DNA-directed RNA polymerase subunit M
[Pyrobaculum aerophilum str. IM2]
Length = 110
Score = 65 bits (156), Expect = 2e-008
Identities = 25/38 (65%), Positives = 29/38 (76%)
Frame = +1
Query: 559 CPRCGHDKAYFKTMQIRSADEPESRFYRCVKCEQTWRE 672
CP+CGHD+AY Q R+ADEP +RFYRC KC TWRE
Sbjct: 71 CPKCGHDEAYVWVQQTRAADEPPTRFYRCTKCGYTWRE 108
>gi|119871953|ref|YP_929960.1| transcription termination factor Tfs [Pyrobaculum
islandicum DSM 4184]
Length = 110
Score = 65 bits (156), Expect = 2e-008
Identities = 25/38 (65%), Positives = 29/38 (76%)
Frame = +1
Query: 559 CPRCGHDKAYFKTMQIRSADEPESRFYRCVKCEQTWRE 672
CP+CGHD+AY Q R+ADEP +RFYRC KC TWRE
Sbjct: 71 CPKCGHDEAYVWVQQTRAADEPPTRFYRCTKCGYTWRE 108
>gi|126459602|ref|YP_001055880.1| DNA-directed RNA polymerase, subunit M
[Pyrobaculum calidifontis JCM 11548]
Length = 124
Score = 65 bits (156), Expect = 2e-008
Identities = 24/38 (63%), Positives = 29/38 (76%)
Frame = +1
Query: 559 CPRCGHDKAYFKTMQIRSADEPESRFYRCVKCEQTWRE 672
CP+CGHD+AYF Q R+ADEP +RFY+C KC WRE
Sbjct: 85 CPKCGHDEAYFWVQQTRAADEPPTRFYKCTKCGHVWRE 122
>gi|170290660|ref|YP_001737476.1| DNA-directed RNA polymerase subunit M
[Candidatus Korarchaeum cryptofilum OPF8]
Length = 108
Score = 64 bits (155), Expect = 2e-008
Identities = 24/43 (55%), Positives = 34/43 (79%)
Frame = +1
Query: 544 LLSAPCPRCGHDKAYFKTMQIRSADEPESRFYRCVKCEQTWRE 672
++ A CP+CG+DKAYF+ +Q R+ADEP +R Y+C KC +WRE
Sbjct: 64 VVEARCPKCGNDKAYFQIVQTRAADEPPTRIYKCTKCGYSWRE 106
>gi|221053187|ref|XP_002257968.1| transcription factor [Plasmodium knowlesi
strain H]
Length = 106
Score = 64 bits (154), Expect = 3e-008
Identities = 25/40 (62%), Positives = 31/40 (77%)
Frame = +1
Query: 553 APCPRCGHDKAYFKTMQIRSADEPESRFYRCVKCEQTWRE 672
A CP+C HD+AYF +MQIRSADEP + FY C+KC W+E
Sbjct: 67 AVCPKCTHDEAYFYSMQIRSADEPSTLFYICIKCNHHWKE 106
>gi|255072375|ref|XP_002499862.1| predicted protein [Micromonas sp. RCC299]
Length = 109
Score = 64 bits (154), Expect = 3e-008
Identities = 26/41 (63%), Positives = 30/41 (73%)
Frame = +1
Query: 550 SAPCPRCGHDKAYFKTMQIRSADEPESRFYRCVKCEQTWRE 672
SA CP+C H +AYF +QIRSADEP S FY+C KC WRE
Sbjct: 68 SATCPKCDHGQAYFMQIQIRSADEPMSTFYKCCKCANQWRE 108
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,531,826,676,690
Number of Sequences: 15229318
Number of Extensions: 3531826676690
Number of Successful Extensions: 836928167
Number of sequences better than 0.0: 0
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