BLASTX 7.6.2

Query= UN29705 /QuerySize=877
        (876 letters)

Database: UniProt/SwissProt;
          518,415 sequences; 182,829,261 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

sp|Q58548|RPOM_METJA DNA-directed RNA polymerase subunit M OS=Me...     63   2e-009
sp|Q07271|RPOM_SULAC DNA-directed RNA polymerase subunit M OS=Su...     63   3e-009
sp|O29033|RPOM_ARCFU DNA-directed RNA polymerase subunit M OS=Ar...     59   4e-008
sp|O27369|RPOM_METTH DNA-directed RNA polymerase subunit M OS=Me...     55   7e-007
sp|O13896|RPC10_SCHPO DNA-directed RNA polymerase III subunit RP...     54   1e-006
sp|Q9CQZ7|RPC10_MOUSE DNA-directed RNA polymerase III subunit RP...     54   2e-006
sp|Q04307|RPC10_YEAST DNA-directed RNA polymerase III subunit RP...     52   6e-006
sp|Q2M2S7|RPC10_BOVIN DNA-directed RNA polymerase III subunit RP...     51   8e-006

>sp|Q58548|RPOM_METJA DNA-directed RNA polymerase subunit M
        OS=Methanocaldococcus jannaschii GN=rpoM PE=3 SV=1

          Length = 108

 Score =  63 bits (152), Expect = 2e-009
 Identities = 24/38 (63%), Positives = 30/38 (78%)
 Frame = +1

Query: 559 CPRCGHDKAYFKTMQIRSADEPESRFYRCVKCEQTWRE 672
           CP+CGH++AY+   Q R ADEPE+RFY+C KC  TWRE
Sbjct:  69 CPKCGHNEAYWWLQQTRCADEPETRFYKCKKCGHTWRE 106

>sp|Q07271|RPOM_SULAC DNA-directed RNA polymerase subunit M OS=Sulfolobus
        acidocaldarius GN=rpoM PE=3 SV=2

          Length = 111

 Score =  63 bits (151), Expect = 3e-009
 Identities = 24/38 (63%), Positives = 30/38 (78%)
 Frame = +1

Query: 559 CPRCGHDKAYFKTMQIRSADEPESRFYRCVKCEQTWRE 672
           CP CG+D+AYF  +Q RSADEP +RFY+C KC + WRE
Sbjct:  72 CPSCGNDEAYFWILQTRSADEPATRFYKCTKCGKVWRE 109

>sp|O29033|RPOM_ARCFU DNA-directed RNA polymerase subunit M OS=Archaeoglobus
        fulgidus GN=rpoM PE=3 SV=1

          Length = 103

 Score =  59 bits (141), Expect = 4e-008
 Identities = 23/40 (57%), Positives = 31/40 (77%)
 Frame = +1

Query: 553 APCPRCGHDKAYFKTMQIRSADEPESRFYRCVKCEQTWRE 672
           A CP CGH++A++   Q+R+ADE E RF+RC KC +TWRE
Sbjct:  62 AICPACGHNEAFWWLRQLRAADESEVRFFRCTKCGKTWRE 101

>sp|O27369|RPOM_METTH DNA-directed RNA polymerase subunit M OS=Methanobacterium
        thermoautotrophicum GN=rpoM PE=3 SV=2

          Length = 104

 Score =  55 bits (130), Expect = 7e-007
 Identities = 20/38 (52%), Positives = 29/38 (76%)
 Frame = +1

Query: 559 CPRCGHDKAYFKTMQIRSADEPESRFYRCVKCEQTWRE 672
           CP+CG+ +A++   Q R ADE E+RF+RC +C+ TWRE
Sbjct:  65 CPKCGNMEAFWWLQQTRRADESETRFFRCTRCKHTWRE 102

>sp|O13896|RPC10_SCHPO DNA-directed RNA polymerase III subunit RPC10
        OS=Schizosaccharomyces pombe GN=rpc11 PE=2 SV=1

          Length = 109

 Score =  54 bits (129), Expect = 1e-006
 Identities = 22/36 (61%), Positives = 28/36 (77%)
 Frame = +1

Query: 565 RCGHDKAYFKTMQIRSADEPESRFYRCVKCEQTWRE 672
           +C +++AYF  +QIRSADEP S FYRC KC+  WRE
Sbjct:  73 KCDNNRAYFFQLQIRSADEPMSTFYRCTKCKFQWRE 108

>sp|Q9CQZ7|RPC10_MOUSE DNA-directed RNA polymerase III subunit RPC10 OS=Mus
        musculus GN=Polr3k PE=2 SV=1

          Length = 108

 Score =  54 bits (127), Expect = 2e-006
 Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
 Frame = +1

Query: 556 PCPRCGHDKAYFKTMQIRSADEPESRFYRC--VKCEQTWRE 672
           PCP+C H +AYF  +Q RSADEP + FY+C   +C   WR+
Sbjct:  68 PCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108

>sp|Q04307|RPC10_YEAST DNA-directed RNA polymerase III subunit RPC10
        OS=Saccharomyces cerevisiae GN=RPC11 PE=1 SV=1

          Length = 110

 Score =  52 bits (122), Expect = 6e-006
 Identities = 22/41 (53%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
 Frame = +1

Query: 559 CPR---CGHDKAYFKTMQIRSADEPESRFYRCVKCEQTWRE 672
           CP    CG + AYF  +QIRSADEP + FY+CV C   W+E
Sbjct:  69 CPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKE 109

>sp|Q2M2S7|RPC10_BOVIN DNA-directed RNA polymerase III subunit RPC10 OS=Bos
        taurus GN=POLR3K PE=3 SV=1

          Length = 108

 Score =  51 bits (121), Expect = 8e-006
 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
 Frame = +1

Query: 556 PCPRCGHDKAYFKTMQIRSADEPESRFYRC--VKCEQTWRE 672
           PCP+C H +AYF  +Q R ADEP + FY+C   +C   WR+
Sbjct:  68 PCPKCEHPRAYFMQLQTRYADEPMTTFYKCCNAQCGHRWRD 108

  Database: UniProt/SwissProt
    Posted date:  Sat Aug 07 14:36:18 2010
  Number of letters in database: 182,829,261
  Number of sequences in database:  518,415

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,645,466,101
Number of Sequences: 518415
Number of Extensions: 122645466101
Number of Successful Extensions: 771820818
Number of sequences better than 0.0: 0