BLASTX 7.6.2

Query= UN30502 /QuerySize=946
        (945 letters)

Database: TAIR9 protein;
          33,410 sequences; 13,468,323 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

TAIR9_protein||AT5G14170.1 | Symbols: CHC1 | CHC1 | chr5:4568696...    414   5e-116
TAIR9_protein||AT3G01890.1 | Symbols:  | SWIB complex BAF60b dom...    181   7e-046
TAIR9_protein||AT2G40030.1 | Symbols: NRPD1B, DRD3, ATNRPD1B, DM...     52   4e-007

>TAIR9_protein||AT5G14170.1 | Symbols: CHC1 | CHC1 | chr5:4568696-4570444
        REVERSE

          Length = 535

 Score =  414 bits (1063), Expect = 5e-116
 Identities = 224/277 (80%), Positives = 236/277 (85%), Gaps = 16/277 (5%)
 Frame = +3

Query: 114 NNNNNNPQKPQGSSAAPSPFGNPGVQASASSVPGNQGFTQQQSHMAPNFPAQFQFSQAQA 293
           + NNNNPQKPQGS  AP PFGNPG+  +++SVPGNQGF   QSHMA NF AQFQFSQAQA
Sbjct:   2 SGNNNNPQKPQGS--APLPFGNPGM--ASASVPGNQGFA--QSHMAANFQAQFQFSQAQA 55

Query: 294 LAHAQAQAQSKAQAQFQAQMQAGMSTMNQGQQGGGSSQGGIGVLGSSSSPSMTPGSLNMK 473
           LAH  AQAQSK QAQ QAQ+QA   TMNQ Q        GIG LG SS    TPGSLNMK
Sbjct:  56 LAH--AQAQSKVQAQLQAQLQAQGMTMNQAQ-----GSPGIGGLGPSSPSLTTPGSLNMK 108

Query: 474 RFQQRPSMRPPSGFPSSNNNTISPMRTMELTPAARKKKMKLPEKSLQERVAAILPESALY 653
           RFQQ+P MRPP G P+S NNTISPMRTMELTPAARKKK KLPEKSLQERVAAILPESALY
Sbjct: 109 RFQQKPPMRPP-GAPAS-NNTISPMRTMELTPAARKKKQKLPEKSLQERVAAILPESALY 166

Query: 654 TQLLEFESRVDAALSRKKVDIQEALKNPPCTQKTLRIYVFNTFANQQNNTIPGNPNADPP 833
           TQLLEFESRVDAAL+RKKVDIQEALKNPPC QKTLRIYVFN+FAN QNNTIPGNPNADPP
Sbjct: 167 TQLLEFESRVDAALTRKKVDIQEALKNPPCIQKTLRIYVFNSFAN-QNNTIPGNPNADPP 225

Query: 834 TWTLKIVGRILEDGVDPDQPGFVQQANPSHPKFSSFF 944
           TWTLKI+GRILEDGVDPDQPGFVQ+ANP HPKFSSFF
Sbjct: 226 TWTLKIIGRILEDGVDPDQPGFVQKANPLHPKFSSFF 262

>TAIR9_protein||AT3G01890.1 | Symbols:  | SWIB complex BAF60b domain-containing
        protein | chr3:310332-311772 FORWARD

          Length = 459

 Score =  181 bits (458), Expect = 7e-046
 Identities = 104/160 (65%), Positives = 117/160 (73%), Gaps = 23/160 (14%)
 Frame = +3

Query: 471 KRFQQRPSMRPPSGFPSSNNNTISPMRTMELTPAARKKKMKLPEK-SLQERVAAILPESA 647
           +RF  +P +  P   P S          MELTPA+RKKK KLP+K SLQERVAA+LPESA
Sbjct:  55 RRFPHKPPIGGPPAVPPS----------MELTPASRKKKHKLPDKSSLQERVAAVLPESA 104

Query: 648 LYTQLLEFESRVDAALSRKKVDIQEALKNPPCTQKTLRIYVFNTFANQQNNTIPGNPNAD 827
           LYTQLLEFESRVDAAL RKKVDIQ++LKNPP  QKTLRIYVFNTF+NQ    IPG    D
Sbjct: 105 LYTQLLEFESRVDAALFRKKVDIQDSLKNPPSIQKTLRIYVFNTFSNQ----IPG---PD 157

Query: 828 PPTWTLKIVGRILEDGVDPDQP-GFVQQANPSHPKFSSFF 944
           PPTWTL+I GR+L    DPD   G VQ +NP +PKFSSFF
Sbjct: 158 PPTWTLRIFGRVL----DPDHTGGLVQNSNPLYPKFSSFF 193


 Score =  158 bits (397), Expect = 8e-039
 Identities = 95/159 (59%), Positives = 112/159 (70%), Gaps = 17/159 (10%)
 Frame = +3

Query: 417 GVLGSSSSPS-MTPGS------LNMKRFQQRPSMRPPSGFPSSNNNTISPMRTMELTPAA 575
           G+  +S +PS M P +      L+  +    P  R P   P      + P  +MELTPA+
Sbjct:  22 GMASASFAPSHMAPPNFQPQFQLSQDQGISAPGRRFPHKPPIGGPPAVPP--SMELTPAS 79

Query: 576 RKKKMKLPEK-SLQERVAAILPESALYTQLLEFESRVDAALSRKKVDIQEALKNPPCTQK 752
           RKKK KLP+K SLQERVAA+LPESALYTQLLEFESRVDAAL RKKVDIQ++LKNPP  QK
Sbjct:  80 RKKKHKLPDKSSLQERVAAVLPESALYTQLLEFESRVDAALFRKKVDIQDSLKNPPSIQK 139

Query: 753 TLRIYVFNTFANQQNNTIPGNPNADPPTWTLKIVGRILE 869
           TLRIYVFNTF+NQ    IPG    DPPTWTL+I GR+L+
Sbjct: 140 TLRIYVFNTFSNQ----IPG---PDPPTWTLRIFGRVLD 171

>TAIR9_protein||AT2G40030.1 | Symbols: NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 |
        NRPD1B; DNA binding / DNA-directed RNA polymerase |
        chr2:16715089-16723406 FORWARD

          Length = 1977

 Score =  52 bits (124), Expect = 4e-007
 Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
 Frame = +3

Query:   84 FF*APMSGNNNNNNNNPQKPQGSSAAPSP---FGNPG--VQASASSVPGNQGFTQQQSHM 248
            +F  P    N + NN    P G   +  P    GN G   Q    S   +Q   Q  S  
Sbjct: 1846 YFTKPRPSGNRDRNNQDATPPGEEQSQPPNQSIGNGGDDFQTQTQSQSPSQTRAQSPSQA 1905

Query:  249 APNFPAQFQF-SQAQALAHAQAQAQSKAQAQFQAQMQAGMSTMNQGQQGGGSSQGGIGVL 425
                P+Q Q  SQ+Q+ + +Q+Q+QS++Q+Q Q+Q Q+   + +Q Q    S        
Sbjct: 1906 QAQSPSQTQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSPSQTQTQSPSQTQAQAQS 1965

Query:  426 GSSSSPSMT 452
             SS SPS T
Sbjct: 1966 PSSQSPSQT 1974

  Database: TAIR9 protein
    Posted date:  Wed Jul 08 15:16:08 2009
  Number of letters in database: 13,468,323
  Number of sequences in database:  33,410

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,869,515,959
Number of Sequences: 33410
Number of Extensions: 15869515959
Number of Successful Extensions: 504234963
Number of sequences better than 0.0: 0