BLASTX 7.6.2
Query= UN30511 /QuerySize=866
(865 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G00830.1 | Symbols: | RNA recognition motif (... 381 4e-106
TAIR9_protein||AT4G00830.2 | Symbols: | RNA recognition motif (... 381 4e-106
TAIR9_protein||AT3G52660.1 | Symbols: | RNA recognition motif (... 182 3e-046
TAIR9_protein||AT3G52660.2 | Symbols: | RNA recognition motif (... 182 3e-046
TAIR9_protein||AT5G28390.1 | Symbols: | RNA recognition motif (... 95 6e-020
TAIR9_protein||AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDI... 66 2e-011
TAIR9_protein||AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDI... 60 2e-009
TAIR9_protein||AT1G71800.1 | Symbols: | cleavage stimulation fa... 52 6e-007
TAIR9_protein||AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDI... 50 2e-006
>TAIR9_protein||AT4G00830.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:352782-354965 FORWARD
Length = 496
Score = 381 bits (977), Expect = 4e-106
Identities = 190/213 (89%), Positives = 199/213 (93%), Gaps = 3/213 (1%)
Frame = -1
Query: 865 AAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSAL 686
AAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSAL
Sbjct: 286 AAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSAL 345
Query: 685 RAVKDSERYEINGQPLEVVLAKPQAERKHD-SSYTYGAAPTPAPFALPTFGGFAAPAYGA 509
+AVKD+ERYE+NGQPLEVVLAKPQAERKHD SSY+YGAAPTPAPF PTFGGFAA YGA
Sbjct: 346 KAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAAPYGA 405
Query: 508 MGSGLGIAGSFSQPMIYGRGSMPTGMQMVPMLLPDGRVGYVLQQPGMQMAPPPPPQRPRR 329
MG+GLGIAGSFSQPMIYGRG+MPTGMQMVPMLLPDGRVGYVLQQPGM MA PPQRPRR
Sbjct: 406 MGAGLGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGYVLQQPGMPMA-AAPPQRPRR 464
Query: 328 GDRNNGSSRGSGRENSDDHDGSRGGGRRYRPY* 230
DRNNGSS GSGR+NS +HDG+R GGRRYRPY*
Sbjct: 465 NDRNNGSSGGSGRDNSHEHDGNR-GGRRYRPY* 496
>TAIR9_protein||AT4G00830.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:352782-354965 FORWARD
Length = 496
Score = 381 bits (977), Expect = 4e-106
Identities = 190/213 (89%), Positives = 199/213 (93%), Gaps = 3/213 (1%)
Frame = -1
Query: 865 AAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSAL 686
AAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSAL
Sbjct: 286 AAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSAL 345
Query: 685 RAVKDSERYEINGQPLEVVLAKPQAERKHD-SSYTYGAAPTPAPFALPTFGGFAAPAYGA 509
+AVKD+ERYE+NGQPLEVVLAKPQAERKHD SSY+YGAAPTPAPF PTFGGFAA YGA
Sbjct: 346 KAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAAPYGA 405
Query: 508 MGSGLGIAGSFSQPMIYGRGSMPTGMQMVPMLLPDGRVGYVLQQPGMQMAPPPPPQRPRR 329
MG+GLGIAGSFSQPMIYGRG+MPTGMQMVPMLLPDGRVGYVLQQPGM MA PPQRPRR
Sbjct: 406 MGAGLGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGYVLQQPGMPMA-AAPPQRPRR 464
Query: 328 GDRNNGSSRGSGRENSDDHDGSRGGGRRYRPY* 230
DRNNGSS GSGR+NS +HDG+R GGRRYRPY*
Sbjct: 465 NDRNNGSSGGSGRDNSHEHDGNR-GGRRYRPY* 496
>TAIR9_protein||AT3G52660.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19522598-19524735 FORWARD
Length = 472
Score = 182 bits (461), Expect = 3e-046
Identities = 99/216 (45%), Positives = 141/216 (65%), Gaps = 13/216 (6%)
Frame = -1
Query: 865 AAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRD--FGFVHYAERSS 692
++A+QVKALY+KN+P + + E+LK LF+ HG++ K+V PP K GK D +GFVHYAER+S
Sbjct: 262 SSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTS 321
Query: 691 ALRAVKDSERYEINGQPLEVVLAKPQAERKHDSSYTYGAAPTPAPFALPTF--GGFAAPA 518
+RA+K++ERYEI+G L+ LAKPQA++K +++ + P G A
Sbjct: 322 VMRALKNTERYEIDGHMLDCTLAKPQADQKTNTNTVQNVQKSQLQPNYPPLLSYGMAPSP 381
Query: 517 YGAMGSGLGIAGSFSQPMIYGRGSMPTGMQMVPMLLPDGRVGYVLQQPGMQMAPPPPPQR 338
+GA+G G G A ++SQP+++ G GM M+P++LPDGR+GYVLQQPG+ P PPP+
Sbjct: 382 FGALG-GFG-ASAYSQPLMHAGGHAAGGMSMMPIMLPDGRIGYVLQQPGLAAMPQPPPRH 439
Query: 337 --PRRGDRNNGSSRGSGRENSDDHDGSRGGGRRYRP 236
P RG +GSS SG + S D+ R RY P
Sbjct: 440 SPPYRG--GSGSSSSSGSKRSSDNGRGRS---RYNP 470
>TAIR9_protein||AT3G52660.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19522598-19524735 FORWARD
Length = 472
Score = 182 bits (461), Expect = 3e-046
Identities = 99/216 (45%), Positives = 141/216 (65%), Gaps = 13/216 (6%)
Frame = -1
Query: 865 AAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRD--FGFVHYAERSS 692
++A+QVKALY+KN+P + + E+LK LF+ HG++ K+V PP K GK D +GFVHYAER+S
Sbjct: 262 SSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTS 321
Query: 691 ALRAVKDSERYEINGQPLEVVLAKPQAERKHDSSYTYGAAPTPAPFALPTF--GGFAAPA 518
+RA+K++ERYEI+G L+ LAKPQA++K +++ + P G A
Sbjct: 322 VMRALKNTERYEIDGHMLDCTLAKPQADQKTNTNTVQNVQKSQLQPNYPPLLSYGMAPSP 381
Query: 517 YGAMGSGLGIAGSFSQPMIYGRGSMPTGMQMVPMLLPDGRVGYVLQQPGMQMAPPPPPQR 338
+GA+G G G A ++SQP+++ G GM M+P++LPDGR+GYVLQQPG+ P PPP+
Sbjct: 382 FGALG-GFG-ASAYSQPLMHAGGHAAGGMSMMPIMLPDGRIGYVLQQPGLAAMPQPPPRH 439
Query: 337 --PRRGDRNNGSSRGSGRENSDDHDGSRGGGRRYRP 236
P RG +GSS SG + S D+ R RY P
Sbjct: 440 SPPYRG--GSGSSSSSGSKRSSDNGRGRS---RYNP 470
>TAIR9_protein||AT5G28390.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:10342024-10342997 REVERSE
Length = 181
Score = 95 bits (234), Expect = 6e-020
Identities = 45/82 (54%), Positives = 64/82 (78%), Gaps = 6/82 (7%)
Frame = -1
Query: 865 AAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRD--FGFVHYAERSS 692
++A+QVKALY+KN+P + + E+LK LF+ HG++ K+V PP K GK D +GFVHYAER+S
Sbjct: 28 SSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTS 87
Query: 691 ALRAVKDSERYEIN----GQPL 638
+RA+K++ERYEI+ QPL
Sbjct: 88 VMRALKNTERYEIDASAYSQPL 109
Score = 69 bits (166), Expect = 4e-012
Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
Frame = -1
Query: 487 AGSFSQPMIYGRGSMPTGMQMVPMLLPDGRVGYVLQQPGMQMAPPPPPQ--RPRRGDRNN 314
A ++SQP+++ G GM M+P++LPDGR+ YVLQQPG+ P PPP+ P RG
Sbjct: 102 ASAYSQPLMHAGGHAAGGMSMMPIMLPDGRIRYVLQQPGLAAMPQPPPRPSPPYRG---- 157
Query: 313 GSSRGSGRENSDDHDG 266
GS S +++SD+ G
Sbjct: 158 GSGSSSSKQSSDNGRG 173
>TAIR9_protein||AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3);
RNA binding / translation initiation factor | chr1:8055599-8058799
FORWARD
Length = 661
Score = 66 bits (160), Expect = 2e-011
Identities = 54/187 (28%), Positives = 82/187 (43%), Gaps = 24/187 (12%)
Frame = -1
Query: 841 LYVKNIPENTSTEQLKELFQRHGEVT--KIVTPPGKGGKRDFGFVHYAERSSALRAVKDS 668
LY+KN+ ++ E+LKE+F +G VT K++ P +G R FGFV Y+ ALRA+ +
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEM 392
Query: 667 ERYEINGQPLEVVLAKPQAERKHDSSYTYGAAPTPAPFALPTFGGFAAPAYGAMGSG--- 497
I +PL + LA+ + +R+ + P P + GF P G M
Sbjct: 393 NGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRAPGPMS-----GFHHPPGGPMPGPPQH 447
Query: 496 --LGIAGSFSQPMIYGRGSMPTGMQMVPMLLPDGRVG-----YVLQQPGMQMAPPPPPQR 338
+G G+ P S P G P +P R G +++ P + P
Sbjct: 448 MYVGQNGASMVP------SQPIGYGFQPQFMPGMRPGSGPGNFIVPYPLQRQPQTGPRMG 501
Query: 337 PRRGDRN 317
RRG N
Sbjct: 502 FRRGATN 508
>TAIR9_protein||AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN 5);
RNA binding / poly(A) binding / translation initiation factor |
chr1:26990777-26993447 REVERSE
Length = 669
Score = 60 bits (143), Expect = 2e-009
Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Frame = -1
Query: 841 LYVKNIPENTSTEQLKELFQRHGEVTKI-VTPPGKGGKRDFGFVHYAERSSALRAVKDSE 665
LY+KN+ ++ + E+LKE+F +G VT V +G R FGFV Y+ AL A+K+
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMN 389
Query: 664 RYEINGQPLEVVLAKPQAERKH--DSSYTYGAAP-TPAPFALPTFGGFAAPAYGAM 506
I +PL V LA+ + ER+ S +T +P T +P P G P G M
Sbjct: 390 GKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPM 445
>TAIR9_protein||AT1G71800.1 | Symbols: | cleavage stimulation factor, putative
| chr1:26999606-27001850 FORWARD
Length = 462
Score = 52 bits (122), Expect = 6e-007
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Frame = -1
Query: 859 AAQVKALYVKNIPENTSTEQLKELFQRHGEVT--KIVTPPGKGGKRDFGFVHYAERSSAL 686
++Q + ++V NIP + + EQL+E+ G V ++VT G + +GF Y + +AL
Sbjct: 5 SSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETAL 64
Query: 685 RAVKDSERYEINGQPLEVVLAK 620
A ++ + YEING+ L V A+
Sbjct: 65 SARRNLQSYEINGRQLRVDFAE 86
>TAIR9_protein||AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDING PROTEIN 7);
RNA binding / translation initiation factor | chr2:15361476-15364398
REVERSE
Length = 610
Score = 50 bits (118), Expect = 2e-006
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Frame = -1
Query: 856 AQVKALYVKNIPENTSTEQLKELFQRHGEVTKI-VTPPGKGGKRDFGFVHYAERSSALRA 680
A+V +YVKN+ + E+L++ F + G +T + KG + FGFV ++ A+ A
Sbjct: 301 AKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDA 360
Query: 679 VKDSERYEINGQPLEVVLAKPQAERKHDSSYTYG 578
VK +G+PL V +A+ + +RK +G
Sbjct: 361 VKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFG 394
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,869,515,959
Number of Sequences: 33410
Number of Extensions: 15869515959
Number of Successful Extensions: 504234963
Number of sequences better than 0.0: 0
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