BLASTX 7.6.2
Query= UN30690 /QuerySize=848
(847 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G28910.2 | Symbols: | LOCATED IN: cellular_co... 264 7e-071
TAIR9_protein||AT4G28910.1 | Symbols: | LOCATED IN: cellular_co... 264 7e-071
TAIR9_protein||AT4G28910.3 | Symbols: | LOCATED IN: cellular_co... 264 7e-071
>TAIR9_protein||AT4G28910.2 | Symbols: | LOCATED IN: cellular_component
unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675
(InterPro:IPR012463); BEST Arabidopsis thaliana protein match is:
nuclear transport factor 2 (NTF2) family protein / RNA recognition
motif (RRM)-containing protein (TAIR:AT3G07250.1); Has 223 Blast hits
to 204 proteins in 56 species: Archae - 2; Bacteria - 11; Metazoa - 48;
Fungi - 32; Plants - 89; Viruses - 3; Other Eukaryotes - 38 (source:
NCBI BLink). | chr4:14264330-14265680 REVERSE
Length = 426
Score = 264 bits (673), Expect = 7e-071
Identities = 155/244 (63%), Positives = 173/244 (70%), Gaps = 32/244 (13%)
Frame = +2
Query: 173 MDDDNGLELSLGLSCGG--GKAKG-ANNNAGTSSENHHHNVEGDNRSAKVIDDFKNFLHP 343
MDDDNGLELSLGLSCGG GKAKG NNNAG+SSEN + EG +RSAKVIDDFKNFLHP
Sbjct: 1 MDDDNGLELSLGLSCGGSTGKAKGNNNNNAGSSSEN--YRAEGGDRSAKVIDDFKNFLHP 58
Query: 344 TTSQRP--PAAAADPSSEPPPPPQNFFNDLSKAPTSADAAEAASTKPLWVEDEAMKEAGS 517
TSQRP P++ + S PPQNFFNDLSKAPT+ ASTKPLWVEDE+ KEAG
Sbjct: 59 -TSQRPAEPSSGSQRSDSGQQPPQNFFNDLSKAPTT---EAEASTKPLWVEDESRKEAG- 113
Query: 518 SKRKFGFQEMNDEKK------------KKAKASLVSNATDEGSTADNEDVAESEAGGGDL 661
+KRKFGF MND+KK KK KAS VS ATDEGSTA+NEDVAESE GGG
Sbjct: 114 NKRKFGFPGMNDDKKKEKDSSHVDMHEKKTKASHVSTATDEGSTAENEDVAESEVGGGSS 173
Query: 662 AKDVVVAARPAAD---MDSIAGQRKSNH----VEEFTANRNMSYNVPFTVHPHNVITGLP 820
+ RP D +D++ GQR+SNH EEFT RNMSY VPFTVHP NV+T +P
Sbjct: 174 SNHAKEVVRPPTDTNIVDNLTGQRRSNHGGSGTEEFTM-RNMSYTVPFTVHPQNVVTSMP 232
Query: 821 YSLP 832
YSLP
Sbjct: 233 YSLP 236
Score = 121 bits (301), Expect = 1e-027
Identities = 65/106 (61%), Positives = 74/106 (69%), Gaps = 8/106 (7%)
Frame = +2
Query: 551 DEKKKKAKASLVSNATDEGSTADNEDVAESEAGGGDLAKDVVVAARPAAD---MDSIAGQ 721
D +KK KAS VS ATDEGSTA+NEDVAESE GGG + RP D +D++ GQ
Sbjct: 137 DMHEKKTKASHVSTATDEGSTAENEDVAESEVGGGSSSNHAKEVVRPPTDTNIVDNLTGQ 196
Query: 722 RKSNH----VEEFTANRNMSYNVPFTVHPHNVITGLPYSLPGKESG 847
R+SNH EEFT RNMSY VPFTVHP NV+T +PYSLP KESG
Sbjct: 197 RRSNHGGSGTEEFTM-RNMSYTVPFTVHPQNVVTSMPYSLPTKESG 241
>TAIR9_protein||AT4G28910.1 | Symbols: | LOCATED IN: cellular_component
unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675
(InterPro:IPR012463); BEST Arabidopsis thaliana protein match is:
nuclear transport factor 2 (NTF2) family protein / RNA recognition
motif (RRM)-containing protein (TAIR:AT3G07250.1); Has 223 Blast hits
to 204 proteins in 56 species: Archae - 2; Bacteria - 11; Metazoa - 48;
Fungi - 32; Plants - 89; Viruses - 3; Other Eukaryotes - 38 (source:
NCBI BLink). | chr4:14264330-14265680 REVERSE
Length = 426
Score = 264 bits (673), Expect = 7e-071
Identities = 155/244 (63%), Positives = 173/244 (70%), Gaps = 32/244 (13%)
Frame = +2
Query: 173 MDDDNGLELSLGLSCGG--GKAKG-ANNNAGTSSENHHHNVEGDNRSAKVIDDFKNFLHP 343
MDDDNGLELSLGLSCGG GKAKG NNNAG+SSEN + EG +RSAKVIDDFKNFLHP
Sbjct: 1 MDDDNGLELSLGLSCGGSTGKAKGNNNNNAGSSSEN--YRAEGGDRSAKVIDDFKNFLHP 58
Query: 344 TTSQRP--PAAAADPSSEPPPPPQNFFNDLSKAPTSADAAEAASTKPLWVEDEAMKEAGS 517
TSQRP P++ + S PPQNFFNDLSKAPT+ ASTKPLWVEDE+ KEAG
Sbjct: 59 -TSQRPAEPSSGSQRSDSGQQPPQNFFNDLSKAPTT---EAEASTKPLWVEDESRKEAG- 113
Query: 518 SKRKFGFQEMNDEKK------------KKAKASLVSNATDEGSTADNEDVAESEAGGGDL 661
+KRKFGF MND+KK KK KAS VS ATDEGSTA+NEDVAESE GGG
Sbjct: 114 NKRKFGFPGMNDDKKKEKDSSHVDMHEKKTKASHVSTATDEGSTAENEDVAESEVGGGSS 173
Query: 662 AKDVVVAARPAAD---MDSIAGQRKSNH----VEEFTANRNMSYNVPFTVHPHNVITGLP 820
+ RP D +D++ GQR+SNH EEFT RNMSY VPFTVHP NV+T +P
Sbjct: 174 SNHAKEVVRPPTDTNIVDNLTGQRRSNHGGSGTEEFTM-RNMSYTVPFTVHPQNVVTSMP 232
Query: 821 YSLP 832
YSLP
Sbjct: 233 YSLP 236
Score = 121 bits (301), Expect = 1e-027
Identities = 65/106 (61%), Positives = 74/106 (69%), Gaps = 8/106 (7%)
Frame = +2
Query: 551 DEKKKKAKASLVSNATDEGSTADNEDVAESEAGGGDLAKDVVVAARPAAD---MDSIAGQ 721
D +KK KAS VS ATDEGSTA+NEDVAESE GGG + RP D +D++ GQ
Sbjct: 137 DMHEKKTKASHVSTATDEGSTAENEDVAESEVGGGSSSNHAKEVVRPPTDTNIVDNLTGQ 196
Query: 722 RKSNH----VEEFTANRNMSYNVPFTVHPHNVITGLPYSLPGKESG 847
R+SNH EEFT RNMSY VPFTVHP NV+T +PYSLP KESG
Sbjct: 197 RRSNHGGSGTEEFTM-RNMSYTVPFTVHPQNVVTSMPYSLPTKESG 241
>TAIR9_protein||AT4G28910.3 | Symbols: | LOCATED IN: cellular_component
unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675
(InterPro:IPR012463); BEST Arabidopsis thaliana protein match is:
nuclear transport factor 2 (NTF2) family protein / RNA recognition
motif (RRM)-containing protein (TAIR:AT3G07250.1); Has 223 Blast hits
to 204 proteins in 56 species: Archae - 2; Bacteria - 11; Metazoa - 48;
Fungi - 32; Plants - 89; Viruses - 3; Other Eukaryotes - 38 (source:
NCBI BLink). | chr4:14264330-14265680 REVERSE
Length = 426
Score = 264 bits (673), Expect = 7e-071
Identities = 155/244 (63%), Positives = 173/244 (70%), Gaps = 32/244 (13%)
Frame = +2
Query: 173 MDDDNGLELSLGLSCGG--GKAKG-ANNNAGTSSENHHHNVEGDNRSAKVIDDFKNFLHP 343
MDDDNGLELSLGLSCGG GKAKG NNNAG+SSEN + EG +RSAKVIDDFKNFLHP
Sbjct: 1 MDDDNGLELSLGLSCGGSTGKAKGNNNNNAGSSSEN--YRAEGGDRSAKVIDDFKNFLHP 58
Query: 344 TTSQRP--PAAAADPSSEPPPPPQNFFNDLSKAPTSADAAEAASTKPLWVEDEAMKEAGS 517
TSQRP P++ + S PPQNFFNDLSKAPT+ ASTKPLWVEDE+ KEAG
Sbjct: 59 -TSQRPAEPSSGSQRSDSGQQPPQNFFNDLSKAPTT---EAEASTKPLWVEDESRKEAG- 113
Query: 518 SKRKFGFQEMNDEKK------------KKAKASLVSNATDEGSTADNEDVAESEAGGGDL 661
+KRKFGF MND+KK KK KAS VS ATDEGSTA+NEDVAESE GGG
Sbjct: 114 NKRKFGFPGMNDDKKKEKDSSHVDMHEKKTKASHVSTATDEGSTAENEDVAESEVGGGSS 173
Query: 662 AKDVVVAARPAAD---MDSIAGQRKSNH----VEEFTANRNMSYNVPFTVHPHNVITGLP 820
+ RP D +D++ GQR+SNH EEFT RNMSY VPFTVHP NV+T +P
Sbjct: 174 SNHAKEVVRPPTDTNIVDNLTGQRRSNHGGSGTEEFTM-RNMSYTVPFTVHPQNVVTSMP 232
Query: 821 YSLP 832
YSLP
Sbjct: 233 YSLP 236
Score = 121 bits (301), Expect = 1e-027
Identities = 65/106 (61%), Positives = 74/106 (69%), Gaps = 8/106 (7%)
Frame = +2
Query: 551 DEKKKKAKASLVSNATDEGSTADNEDVAESEAGGGDLAKDVVVAARPAAD---MDSIAGQ 721
D +KK KAS VS ATDEGSTA+NEDVAESE GGG + RP D +D++ GQ
Sbjct: 137 DMHEKKTKASHVSTATDEGSTAENEDVAESEVGGGSSSNHAKEVVRPPTDTNIVDNLTGQ 196
Query: 722 RKSNH----VEEFTANRNMSYNVPFTVHPHNVITGLPYSLPGKESG 847
R+SNH EEFT RNMSY VPFTVHP NV+T +PYSLP KESG
Sbjct: 197 RRSNHGGSGTEEFTM-RNMSYTVPFTVHPQNVVTSMPYSLPTKESG 241
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,952,330,062
Number of Sequences: 33410
Number of Extensions: 15952330062
Number of Successful Extensions: 504294319
Number of sequences better than 0.0: 0
|
