BLASTX 7.6.2

Query= UN31308 /QuerySize=1030
        (1029 letters)

Database: UniProt/SwissProt;
          518,415 sequences; 182,829,261 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

sp|Q5XET6|PUS3_ARATH RNA pseudourine synthase 3, mitochondrial O...    236   2e-061
sp|Q0J4D4|PUS3_ORYSJ RNA pseudourine synthase 3, mitochondrial O...    198   5e-050
sp|Q9LT72|PUS4_ARATH RNA pseudourine synthase 4, mitochondrial O...    106   4e-022
sp|Q69K07|PUS4_ORYSJ RNA pseudourine synthase 4, mitochondrial O...     55   7e-007

>sp|Q5XET6|PUS3_ARATH RNA pseudourine synthase 3, mitochondrial OS=Arabidopsis
        thaliana GN=At1g78910 PE=2 SV=1

          Length = 478

 Score =  236 bits (602), Expect = 2e-061
 Identities = 115/127 (90%), Positives = 119/127 (93%), Gaps = 2/127 (1%)
 Frame = -1

Query: 381 QLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQVDIEPTTGKQYKLRRPEGLDVQKGSVL 202
           QLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQVDIEPTTGK YKLRRPEGLDVQKGSVL
Sbjct: 353 QLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQVDIEPTTGKPYKLRRPEGLDVQKGSVL 412

Query: 201 SKVPLLHLHCREMVLPNIAKFLHVLNQKEDADPLLRPGITSKPDLLRFVASMPSHMKISW 22
           SKVPLLHLHCREMVLPNIAKFLHV+NQ+E  +P L  GI  KPDLLRFVASMPSHMKISW
Sbjct: 413 SKVPLLHLHCREMVLPNIAKFLHVMNQQE-TEP-LHTGIIDKPDLLRFVASMPSHMKISW 470

Query:  21 NIMSSYL 1
           N+MSSYL
Sbjct: 471 NLMSSYL 477


 Score =  102 bits (253), Expect = 5e-021
 Identities = 48/56 (85%), Positives = 53/56 (94%)
 Frame = -3

Query: 616 VLLDDGKTDRVVLAQGSGFEASQEAITKYRVLGPMINGCSWLELRPITGRKHQVVV 449
           VLLDDGKTDRVVLAQGSGFEASQ+AIT+Y+VLGP INGCSW+ELRPIT RKHQ+ V
Sbjct: 301 VLLDDGKTDRVVLAQGSGFEASQDAITEYKVLGPKINGCSWVELRPITSRKHQLRV 356


 Score =  77 bits (189), Expect = 1e-013
 Identities = 36/39 (92%), Positives = 38/39 (97%)
 Frame = -1

Query: 996 VHRLDRETSGLLVMGRTKESIDHLHSVFSDFKGRNSRCK 880
           VHRLDRETSGLLVMGRTKESID+LHSVFSD+KGRNS CK
Sbjct: 228 VHRLDRETSGLLVMGRTKESIDYLHSVFSDYKGRNSSCK 266


 Score =  74 bits (179), Expect = 2e-012
 Identities = 33/37 (89%), Positives = 36/37 (97%)
 Frame = -1

Query: 795 AWNKACEAMYQRYWALVIGSPKDKEGVISAPLSKVSL 685
           AWNKACEAMYQ+YWALVIGSPK+KEG+ISAPLSKV L
Sbjct: 267 AWNKACEAMYQQYWALVIGSPKEKEGLISAPLSKVLL 303

>sp|Q0J4D4|PUS3_ORYSJ RNA pseudourine synthase 3, mitochondrial OS=Oryza sativa
        subsp. japonica GN=Os08g0520100 PE=2 SV=1

          Length = 475

 Score =  198 bits (503), Expect = 5e-050
 Identities = 101/154 (65%), Positives = 115/154 (74%), Gaps = 13/154 (8%)
 Frame = -1

Query: 435 TILRVVSPLTFFVCCFLK---------QLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQ 283
           T  RV+ P T   C +++         QLRVHCAEALGTPIVGDYKYGWFVH+RWKQ PQ
Sbjct: 325 TAYRVMGP-TIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQNPQ 383

Query: 282 VDIEPTTGKQYKLRRPEGLDVQKGSVLSKVPLLHLHCREMVLPNIAKFLHVLNQKEDADP 103
            D EP TG+ YKLRRPEGL++QKGSVLSKVPLLHLHCREMV+PNIAKFL    +  +   
Sbjct: 384 PDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSSNGEWHENG- 442

Query: 102 LLRPGITSKPDLLRFVASMPSHMKISWNIMSSYL 1
              P    KP+LLRF+A MP+HMKISWNIMSSYL
Sbjct: 443 --APWSKEKPNLLRFIAPMPAHMKISWNIMSSYL 474


 Score =  87 bits (215), Expect = 1e-016
 Identities = 38/56 (67%), Positives = 48/56 (85%)
 Frame = -3

Query: 616 VLLDDGKTDRVVLAQGSGFEASQEAITKYRVLGPMINGCSWLELRPITGRKHQVVV 449
           VLLDDGK +RV+LA  SG + +QEA+T YRV+GP I+GCSW+ELRP+TGRKHQ+ V
Sbjct: 299 VLLDDGKAERVILAHPSGIDGAQEAVTAYRVMGPTIHGCSWIELRPLTGRKHQLRV 354


 Score =  65 bits (158), Expect = 5e-010
 Identities = 29/40 (72%), Positives = 34/40 (85%)
 Frame = -1

Query: 804 NT*AWNKACEAMYQRYWALVIGSPKDKEGVISAPLSKVSL 685
           N+  WN ACEA  QRYWALVIG+PK++EG+ISAPLSKV L
Sbjct: 262 NSQVWNAACEAYMQRYWALVIGTPKEREGIISAPLSKVLL 301

>sp|Q9LT72|PUS4_ARATH RNA pseudourine synthase 4, mitochondrial OS=Arabidopsis
        thaliana GN=At3g19440 PE=2 SV=1

          Length = 477

 Score =  106 bits (263), Expect = 4e-022
 Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 11/125 (8%)
 Frame = -1

Query: 381 QLRVHCAEALGTPIVGDYKYGWFVHKRWKQMPQVDIEPTTGKQYKLRRPEGLDVQKGSVL 202
           QLRVHCAE LGTPIVGDYKYGW  HK   + P V  E    KQ     P GLD+  G V 
Sbjct: 356 QLRVHCAEVLGTPIVGDYKYGWQAHK--AREPFVSSENNPTKQSS--SPFGLDLDGGDVS 411

Query: 201 SKVPLLHLHCREMVLPNIAKFLHVLNQKEDADPLLRPGITSKPDLLRFVASMPSHMKISW 22
           SK P LHLH +++ LPNI++ L  +    D+D        S  D L+F A +PSHM++S+
Sbjct: 412 SKQPHLHLHSKQIDLPNISQLLEKMQVSSDSD-------ISDLDSLKFDAPLPSHMQLSF 464

Query:  21 NIMSS 7
           N++ S
Sbjct: 465 NLLKS 469


 Score =  61 bits (147), Expect = 1e-008
 Identities = 27/56 (48%), Positives = 41/56 (73%)
 Frame = -3

Query: 616 VLLDDGKTDRVVLAQGSGFEASQEAITKYRVLGPMINGCSWLELRPITGRKHQVVV 449
           V++DDGK++R+ +       ++Q AIT+YRV+    +G +WLELRP+TGRKHQ+ V
Sbjct: 304 VVVDDGKSERITVNDNGELVSTQHAITEYRVIESSPHGYTWLELRPLTGRKHQLRV 359

>sp|Q69K07|PUS4_ORYSJ RNA pseudourine synthase 4, mitochondrial OS=Oryza sativa
        subsp. japonica GN=Os09g0103500 PE=2 SV=1

          Length = 448

 Score =  55 bits (131), Expect = 7e-007
 Identities = 25/53 (47%), Positives = 36/53 (67%)
 Frame = -3

Query: 616 VLLDDGKTDRVVLAQGSGFEASQEAITKYRVLGPMINGCSWLELRPITGRKHQ 458
           +LL DGK++R+ +   S   + Q+A+T+YRV+     G +WLEL P TGRKHQ
Sbjct: 293 ILLQDGKSERLTIRASSNAASVQDALTEYRVIESCPQGYTWLELFPRTGRKHQ 345

  Database: UniProt/SwissProt
    Posted date:  Sat Aug 07 14:36:18 2010
  Number of letters in database: 182,829,261
  Number of sequences in database:  518,415

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,067,222,631
Number of Sequences: 518415
Number of Extensions: 126067222631
Number of Successful Extensions: 789442336
Number of sequences better than 0.0: 0