BLASTX 7.6.2
Query= UN32556 /QuerySize=1164
(1163 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G76940.1 | Symbols: | RNA recognition motif (... 290 1e-078
TAIR9_protein||AT1G21320.1 | Symbols: | nucleic acid binding / ... 195 6e-050
TAIR9_protein||AT1G21320.2 | Symbols: | nucleic acid binding / ... 195 6e-050
>TAIR9_protein||AT1G76940.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:28902707-28904085 REVERSE
Length = 234
Score = 290 bits (741), Expect = 1e-078
Identities = 164/246 (66%), Positives = 176/246 (71%), Gaps = 34/246 (13%)
Frame = -3
Query: 1014 MADGYWN------HPPGPGGGPPKRRRPDFET-HEMHGGGGGGGYFPRDEDL---DARTI 865
MADGYWN HPP GGP KR R DFE G GGGY+PRDEDL D RTI
Sbjct: 1 MADGYWNQQRQQHHPP---GGPMKRPRSDFEAPSSTMTIGHGGGYYPRDEDLDVPDTRTI 57
Query: 864 GSAYDRYLQSVQT---SSMPLGEAGPPRNGG---VVAIDEFMMRRG------QGLNGRDM 721
GSAYDRYLQSVQ+ S+ +G +G GG V ID+FM+RRG G NG +
Sbjct: 58 GSAYDRYLQSVQSGEGGSVSMGRSGGGGGGGGGNVQTIDDFMLRRGGVLPLDHGPNGHTI 117
Query: 720 GGGFDPLDSVDRRNSNREPLPLPPDASNTLYVEGLPPNCSRREVAHIFRPFVGYREARLV 541
GFDP + V RRN LP DASNTLYVEGLP NCSRREVAHIFRPFVGYRE RLV
Sbjct: 118 --GFDPPEPVGRRN-------LPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLV 168
Query: 540 TKDSKHRNGDPVVLCFVDFTSPACAATALSTLQGYRMDENDPDSKFLRLQFSRKPTSRPG 361
TKDSKHRNGDP+VLCFVDFT+PACAATALS LQGYRMDEN+ DSKFLRLQFSRKP SRPG
Sbjct: 169 TKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKPGSRPG 228
Query: 360 QRVRR* 343
QR RR*
Sbjct: 229 QRGRR* 234
>TAIR9_protein||AT1G21320.1 | Symbols: | nucleic acid binding / nucleotide
binding | chr1:7462834-7465200 REVERSE
Length = 422
Score = 195 bits (494), Expect = 6e-050
Identities = 98/127 (77%), Positives = 104/127 (81%), Gaps = 4/127 (3%)
Frame = -3
Query: 735 NGRDMGGGFDPLDSVDRRNSNREPLPLPPDASNTLYVEGLPPNCSRREVAHIFRPFVGYR 556
NGRDM GF LDSV R REP PLPPD SNTLYVEGLP NCSRREV+HIFRPFVGYR
Sbjct: 295 NGRDM--GFGQLDSVGR--PGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYR 350
Query: 555 EARLVTKDSKHRNGDPVVLCFVDFTSPACAATALSTLQGYRMDENDPDSKFLRLQFSRKP 376
E RLVT+DSKHR+GDP VLCFVDF + ACAATALS LQ YRMDE++PDSK LRLQF R P
Sbjct: 351 EVRLVTQDSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNP 410
Query: 375 TSRPGQR 355
RPGQR
Sbjct: 411 GPRPGQR 417
>TAIR9_protein||AT1G21320.2 | Symbols: | nucleic acid binding / nucleotide
binding | chr1:7462834-7466164 REVERSE
Length = 254
Score = 195 bits (494), Expect = 6e-050
Identities = 98/127 (77%), Positives = 104/127 (81%), Gaps = 4/127 (3%)
Frame = -3
Query: 735 NGRDMGGGFDPLDSVDRRNSNREPLPLPPDASNTLYVEGLPPNCSRREVAHIFRPFVGYR 556
NGRDM GF LDSV R REP PLPPD SNTLYVEGLP NCSRREV+HIFRPFVGYR
Sbjct: 127 NGRDM--GFGQLDSVGR--PGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYR 182
Query: 555 EARLVTKDSKHRNGDPVVLCFVDFTSPACAATALSTLQGYRMDENDPDSKFLRLQFSRKP 376
E RLVT+DSKHR+GDP VLCFVDF + ACAATALS LQ YRMDE++PDSK LRLQF R P
Sbjct: 183 EVRLVTQDSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNP 242
Query: 375 TSRPGQR 355
RPGQR
Sbjct: 243 GPRPGQR 249
Score = 57 bits (136), Expect = 2e-008
Identities = 42/100 (42%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Frame = -3
Query: 969 PPKRRRPDFE-THEMHGGGGGGGYFPRDED-------LDARTIGSAYDRYLQSVQTSSMP 814
PPKR R DF+ T + G Y +DED D R+IGSAYDRYLQS+QT +P
Sbjct: 24 PPKRPRSDFQGTPYLIPSGDMHSYLSQDEDRGIPHSVKDTRSIGSAYDRYLQSMQTFFVP 83
Query: 813 LGEAGPPRNGGVVAIDEFMMRRGQGLNGRDMG-GGFDPLD 697
EAGP G+V M G + G GG P D
Sbjct: 84 SEEAGPFNGVGMVRQGGSNMMPGPSMGELMAGCGGSLPSD 123
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,197,270,730
Number of Sequences: 33410
Number of Extensions: 17197270730
Number of Successful Extensions: 561746603
Number of sequences better than 0.0: 0
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