BLASTX 7.6.2
Query= UN32640 /QuerySize=1208
(1207 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapie... 376 2e-103
sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus muscul... 376 3e-103
sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norve... 376 3e-103
sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabd... 349 3e-095
sp|O14102|SAP49_SCHPO Spliceosome-associated protein 49 OS=Schiz... 253 3e-066
sp|Q55GD6|SF3B4_DICDI Splicing factor 3B subunit 4 OS=Dictyostel... 222 4e-057
sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabido... 122 6e-027
sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sa... 121 1e-026
sp|P60047|PABP5_GORGO Polyadenylate-binding protein 5 OS=Gorilla... 113 4e-024
sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sa... 113 4e-024
sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobat... 113 4e-024
sp|Q7JGR2|PABP5_MACMU Polyadenylate-binding protein 5 OS=Macaca ... 113 4e-024
sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan tro... 113 4e-024
sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo p... 113 4e-024
sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila... 112 5e-024
sp|Q99181|HSH49_YEAST Protein HSH49 OS=Saccharomyces cerevisiae ... 79 4e-014
sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E OS=Dr... 63 3e-009
sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=B... 61 1e-008
sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=H... 61 1e-008
sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=M... 61 1e-008
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4
PE=1 SV=1
Length = 424
Score = 376 bits (964), Expect = 2e-103
Identities = 204/367 (55%), Positives = 240/367 (65%), Gaps = 40/367 (10%)
Frame = -3
Query: 1109 AERNQEATVYVGGLDPQLSEELLWELFVQSGPVVNVYVPKDRVTGLHLGYGFIEFRSEED 930
+ERNQ+ATVYVGGLD ++SE LLWELF+Q+GPVVN ++PKDRVTG H GYGF+EF SEED
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 929 ADYAIKVLNMIKIHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKILYDTFSAFGGV 750
ADYAIK++NMIK++GKPIRVNKAS K+LDVGAN+FIGNLDP++DEK+LYDTFSAFG +
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVI 126
Query: 749 ASNPKIMRDPDTGNSRGFGFISYDSFDASDAAIEAMTGQYLCNRQITVSYAYKKDTKGER 570
PKIMRDPDTGNS+G+ FI++ SFDASDAAIEAM GQYLCNR ITVSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Query: 569 HGTPAERLLAATNPVAQKSRPHTLFASGPPTAPQANGIPRPFANGGMQP-VPIPGPRPTP 393
HG+ AERLLAA NP++Q RPH LFA PP N + +G P +P PG P P
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPP 246
Query: 392 PPPPPQVYQIQPPSWQFQPHQQQHGLAVPPPMQYRPPQGMPPPP--PPQFFHHQQGFGGP 219
PPP + PP A+PPP G PP P H G P
Sbjct: 247 VPPPGALPPGIPP-------------AMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHP 293
Query: 218 RPPPPQAM---GMNQ--------------HGWPPQHMQQGGPSPPQQPMHLHH----HMF 102
P PP M GM+Q H PP GG PP+ P + H M
Sbjct: 294 HPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPP---GSGGQPPPRPPPGMPHPGPPPMG 350
Query: 101 MPPPPPP 81
MPP PP
Sbjct: 351 MPPRGPP 357
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4
PE=2 SV=1
Length = 424
Score = 376 bits (963), Expect = 3e-103
Identities = 204/367 (55%), Positives = 240/367 (65%), Gaps = 40/367 (10%)
Frame = -3
Query: 1109 AERNQEATVYVGGLDPQLSEELLWELFVQSGPVVNVYVPKDRVTGLHLGYGFIEFRSEED 930
+ERNQ+ATVYVGGLD ++SE LLWELF+Q+GPVVN ++PKDRVTG H GYGF+EF SEED
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 929 ADYAIKVLNMIKIHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKILYDTFSAFGGV 750
ADYAIK++NMIK++GKPIRVNKAS K+LDVGAN+FIGNLDP++DEK+LYDTFSAFG +
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVI 126
Query: 749 ASNPKIMRDPDTGNSRGFGFISYDSFDASDAAIEAMTGQYLCNRQITVSYAYKKDTKGER 570
PKIMRDPDTGNS+G+ FI++ SFDASDAAIEAM GQYLCNR ITVSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Query: 569 HGTPAERLLAATNPVAQKSRPHTLFASGPPTAPQANGIPRPFANGGMQP-VPIPGPRPTP 393
HG+ AERLLAA NP++Q RPH LFA PP N + +G P +P PG P P
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPP 246
Query: 392 PPPPPQVYQIQPPSWQFQPHQQQHGLAVPPPMQYRPPQGMPPPP--PPQFFHHQQGFGGP 219
PPP + PP A+PPP G PP P H G P
Sbjct: 247 VPPPGALPPGIPP-------------AMPPPPMPPGAGGHGPPAAGTPGAGHPGHGHSHP 293
Query: 218 RPPPPQAM---GMNQ--------------HGWPPQHMQQGGPSPPQQPMHLHH----HMF 102
P PP M GM+Q H PP GG PP+ P + H M
Sbjct: 294 HPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPP---GSGGQPPPRPPPGMPHPGPPPMG 350
Query: 101 MPPPPPP 81
MPP PP
Sbjct: 351 MPPRGPP 357
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4
PE=2 SV=1
Length = 424
Score = 376 bits (963), Expect = 3e-103
Identities = 204/367 (55%), Positives = 240/367 (65%), Gaps = 40/367 (10%)
Frame = -3
Query: 1109 AERNQEATVYVGGLDPQLSEELLWELFVQSGPVVNVYVPKDRVTGLHLGYGFIEFRSEED 930
+ERNQ+ATVYVGGLD ++SE LLWELF+Q+GPVVN ++PKDRVTG H GYGF+EF SEED
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 929 ADYAIKVLNMIKIHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKILYDTFSAFGGV 750
ADYAIK++NMIK++GKPIRVNKAS K+LDVGAN+FIGNLDP++DEK+LYDTFSAFG +
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVI 126
Query: 749 ASNPKIMRDPDTGNSRGFGFISYDSFDASDAAIEAMTGQYLCNRQITVSYAYKKDTKGER 570
PKIMRDPDTGNS+G+ FI++ SFDASDAAIEAM GQYLCNR ITVSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Query: 569 HGTPAERLLAATNPVAQKSRPHTLFASGPPTAPQANGIPRPFANGGMQP-VPIPGPRPTP 393
HG+ AERLLAA NP++Q RPH LFA PP N + +G P +P PG P P
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPP 246
Query: 392 PPPPPQVYQIQPPSWQFQPHQQQHGLAVPPPMQYRPPQGMPPPP--PPQFFHHQQGFGGP 219
PPP + PP A+PPP G PP P H G P
Sbjct: 247 VPPPGALPPGIPP-------------AMPPPPMPPGAGGHGPPAAGTPGAGHPGHGHSHP 293
Query: 218 RPPPPQAM---GMNQ--------------HGWPPQHMQQGGPSPPQQPMHLHH----HMF 102
P PP M GM+Q H PP GG PP+ P + H M
Sbjct: 294 HPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPP---GSGGQPPPRPPPGMPHPGPPPMG 350
Query: 101 MPPPPPP 81
MPP PP
Sbjct: 351 MPPRGPP 357
>sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabditis elegans
GN=sap-49 PE=1 SV=2
Length = 388
Score = 349 bits (894), Expect = 3e-095
Identities = 181/351 (51%), Positives = 225/351 (64%), Gaps = 14/351 (3%)
Frame = -3
Query: 1106 ERNQEATVYVGGLDPQLSEELLWELFVQSGPVVNVYVPKDRVTGLHLGYGFIEFRSEEDA 927
ERNQ+AT+YVGGLD ++SE +LWEL VQ+GPVV+V +PKDRVT H G+GF+EF EEDA
Sbjct: 8 ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDA 67
Query: 926 DYAIKVLNMIKIHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKILYDTFSAFGGVA 747
DYAIK+LNMIK++GKPI+VNKAS +K++DVGAN+F+GNLDP+VDEK+LYDTFSAFG +
Sbjct: 68 DYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVIL 127
Query: 746 SNPKIMRDPDTGNSRGFGFISYDSFDASDAAIEAMTGQYLCNRQITVSYAYKKDTKGERH 567
PKIMRD D+G S+GF FI++ SF+ASD A+EAM GQ+LCNR ITVSYA+K+D+KGERH
Sbjct: 128 QVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERH 187
Query: 566 GTPAERLLAATNPVAQKSRPHTLFASGPPTAPQANGIPRPFANGGMQPVPIPGPRPTPPP 387
GT AER+LAA NP+ K RPH +F+ P P + P + + P PPP
Sbjct: 188 GTAAERMLAAQNPLFPKDRPHQVFSDVPLGVPANTPLAMPGVHAAIAAHATGRPGYQPPP 247
Query: 386 PPPQVYQIQPPSWQFQPHQQQHGLAVPPPMQYRPPQGMPPPPPPQFFHHQQGFGGPRPPP 207
+ P +PPPM P PPPPP G P PPP
Sbjct: 248 LMGMAQSGYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPP-----SSGMWPPPPPP 302
Query: 206 PQAM-----GMNQHGWPPQHMQQGGPS----PPQQPMHLHHHMFMPPPPPP 81
P GM PP + G P PP P + + MPPPPPP
Sbjct: 303 PPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPP 353
>sp|O14102|SAP49_SCHPO Spliceosome-associated protein 49 OS=Schizosaccharomyces
pombe GN=sap49 PE=2 SV=2
Length = 335
Score = 253 bits (644), Expect = 3e-066
Identities = 140/295 (47%), Positives = 191/295 (64%), Gaps = 17/295 (5%)
Frame = -3
Query: 1106 ERNQEATVYVGGLDPQLSEELLWELFVQSGPVVNVYVPKDRVTGLHLGYGFIEFRSEEDA 927
+RNQ+AT+Y+G LD ++++ +L+EL +Q+GPVVN+++P+DRV H G+GF EF E+D
Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65
Query: 926 DYAIKVLNMIKIHGKPIRVNKASQDK-KSLDVGANLFIGNLDPDVDEKILYDTFSAFGGV 750
+YA ++LN +K+ GKPIRVN+ASQD+ + +GANLF+GNLDP VDE++LYDTFSA G +
Sbjct: 66 EYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQL 125
Query: 749 ASNPKIMRDPDTGNSRGFGFISYDSFDASDAAIEAMTGQYLCNRQITVSYAYKKDTKGER 570
P++ RD + G S+G+GF+SYDSF+ +DAAIEAM Q+L N+ ITVSYA+K++ KGER
Sbjct: 126 VKAPQVARD-ENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGER 184
Query: 569 HGTPAERLLAAT---NPVA---QKSRPHTLFASGPPTAPQANGIPRPFANGGMQPVP-IP 411
HG AER LAA N VA Q + P F+ P A P A + PVP +P
Sbjct: 185 HGDIAERKLAAAAKKNKVAVTPQSTLPPG-FSPATPAPTSAANTPATIAATSIPPVPNVP 243
Query: 410 GPRPTPPPPPPQVYQIQPPSWQFQPHQQQHGLAVPPPMQY-RPPQGMP--PPPPP 255
T PP + + P F Q G+ P M P G P PPPPP
Sbjct: 244 LVGATTAVPPLSIPNVLP----FTAAQHFPGMPAMPMMNVPMGPGGAPLVPPPPP 294
>sp|Q55GD6|SF3B4_DICDI Splicing factor 3B subunit 4 OS=Dictyostelium discoideum
GN=sf3b4 PE=3 SV=1
Length = 359
Score = 222 bits (565), Expect = 4e-057
Identities = 121/262 (46%), Positives = 171/262 (65%), Gaps = 9/262 (3%)
Frame = -3
Query: 1106 ERNQEATVYVGGLDPQLSEELLWELFVQSGPVVNVYVPKDRVTGLHLGYGFIEFRSEEDA 927
ERN EA + + LDP ++E LL ELF+Q+ PVV V++PKD++T H G ++EF+S DA
Sbjct: 8 ERNHEACLLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDA 67
Query: 926 DYAIKVLNMIKIHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKILYDTFSAFGGVA 747
+YA+KV+ +++ K I++ K ++DK +D+GANLFIGNLD DVDE+IL+DTFS FG +
Sbjct: 68 EYALKVMKFVRLFNKEIKIKKENKDK--VDIGANLFIGNLDADVDERILHDTFSRFGTII 125
Query: 746 SNPKIMRDPDTGNSRGFGFISYDSFDASDAAIEAMTGQYLCNRQITVSYAYKKDTKGERH 567
PK+MRD + G S+GF FI++DSF+ASDAAIEAM Q+LCN+ I+V+YA KKD+ ERH
Sbjct: 126 FTPKVMRD-ENGVSKGFAFINFDSFEASDAAIEAMNSQFLCNKPISVTYARKKDS-NERH 183
Query: 566 GTPAERLLAAT-NPVAQKSRPHTLFASGPPTAPQANGIPRPFANGGMQPVPIPGPRPTPP 390
G+ AER++AA+ N + +S T+ + P+ QP+P P
Sbjct: 184 GSSAERIIAASRNTGYLNQQQQQQSSSTSSTSTISTSTPQQQQQQQSQPLPPPIVTAGGI 243
Query: 389 PPPPQVYQIQPPSWQFQPHQQQ 324
Q+ Q Q Q Q QQQ
Sbjct: 244 IHQQQIQQQQ----QLQQQQQQ 261
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana
GN=PAB2 PE=1 SV=1
Length = 629
Score = 122 bits (305), Expect = 6e-027
Identities = 70/173 (40%), Positives = 107/173 (61%), Gaps = 3/173 (1%)
Frame = -3
Query: 1121 GQHSAERNQEATVYVGGLDPQLSEELLWELFVQSGPVVNVYVPKDRVTGLHLGYGFIEFR 942
G +A + ++YVG LD +++ L++ F Q G VV V V +D VT LGYG++ F
Sbjct: 26 GGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFT 85
Query: 941 SEEDADYAIKVLNMIKIHGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKILYDTFS 765
+ +DA AI+ LN I ++GKPIRV + +D GA N+FI NLD +D K L+DTFS
Sbjct: 86 NPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFS 145
Query: 764 AFGGVASNPKIMRDPDTGNSRGFGFISYDSFDASDAAIEAMTGQYLCNRQITV 606
+FG + S K+ D +G S+G+GF+ Y + +++ AIE + G L ++Q+ V
Sbjct: 146 SFGNIVS-CKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4
PE=1 SV=1
Length = 644
Score = 121 bits (303), Expect = 1e-026
Identities = 65/175 (37%), Positives = 105/175 (60%), Gaps = 5/175 (2%)
Frame = -3
Query: 1091 ATVYVGGLDPQLSEELLWELFVQSGPVVNVYVPKDRVTGLHLGYGFIEFRSEEDADYAIK 912
A++YVG L ++E +L+E F +GPV+++ V +D +T LGY ++ F+ DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 911 VLNMIKIHGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKILYDTFSAFGGVASNPK 735
+N I GKPIR+ + +D G N+FI NLD +D K LYDTFSAFG + S
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 734 IMRDPDTGNSRGFGFISYDSFDASDAAIEAMTGQYLCNRQITVS-YAYKKDTKGE 573
+ D S+G+ F+ +++ +A+D AIE M G L +R++ V + +K+ + E
Sbjct: 131 VC---DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
>sp|P60047|PABP5_GORGO Polyadenylate-binding protein 5 OS=Gorilla gorilla
gorilla GN=PABPC5 PE=3 SV=1
Length = 382
Score = 113 bits (281), Expect = 4e-024
Identities = 61/164 (37%), Positives = 97/164 (59%), Gaps = 4/164 (2%)
Frame = -3
Query: 1094 EATVYVGGLDPQLSEELLWELFVQSGPVVNVYVPKDRVTGLHLGYGFIEFRSEEDADYAI 915
+A +YVG LDP ++E++L++ F +GP+ + +D VT LGYG++ FR DA++A+
Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76
Query: 914 KVLNMIKIHGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKILYDTFSAFGGVASNP 738
+N I+GKP R+ + D + G N+FI NLD +D + L+ FSAFG + S
Sbjct: 77 NTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 737 KIMRDPDTGNSRGFGFISYDSFDASDAAIEAMTGQYLCNRQITV 606
+ D S+G+ ++ +DS A++ AI M G L NRQ+ V
Sbjct: 137 VVC---DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5
PE=1 SV=1
Length = 382
Score = 113 bits (281), Expect = 4e-024
Identities = 61/164 (37%), Positives = 97/164 (59%), Gaps = 4/164 (2%)
Frame = -3
Query: 1094 EATVYVGGLDPQLSEELLWELFVQSGPVVNVYVPKDRVTGLHLGYGFIEFRSEEDADYAI 915
+A +YVG LDP ++E++L++ F +GP+ + +D VT LGYG++ FR DA++A+
Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76
Query: 914 KVLNMIKIHGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKILYDTFSAFGGVASNP 738
+N I+GKP R+ + D + G N+FI NLD +D + L+ FSAFG + S
Sbjct: 77 NTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 737 KIMRDPDTGNSRGFGFISYDSFDASDAAIEAMTGQYLCNRQITV 606
+ D S+G+ ++ +DS A++ AI M G L NRQ+ V
Sbjct: 137 VVC---DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar
GN=PABPC5 PE=3 SV=1
Length = 382
Score = 113 bits (281), Expect = 4e-024
Identities = 61/164 (37%), Positives = 97/164 (59%), Gaps = 4/164 (2%)
Frame = -3
Query: 1094 EATVYVGGLDPQLSEELLWELFVQSGPVVNVYVPKDRVTGLHLGYGFIEFRSEEDADYAI 915
+A +YVG LDP ++E++L++ F +GP+ + +D VT LGYG++ FR DA++A+
Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76
Query: 914 KVLNMIKIHGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKILYDTFSAFGGVASNP 738
+N I+GKP R+ + D + G N+FI NLD +D + L+ FSAFG + S
Sbjct: 77 NTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 737 KIMRDPDTGNSRGFGFISYDSFDASDAAIEAMTGQYLCNRQITV 606
+ D S+G+ ++ +DS A++ AI M G L NRQ+ V
Sbjct: 137 VVC---DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>sp|Q7JGR2|PABP5_MACMU Polyadenylate-binding protein 5 OS=Macaca mulatta
GN=PABPC5 PE=3 SV=1
Length = 382
Score = 113 bits (281), Expect = 4e-024
Identities = 61/164 (37%), Positives = 97/164 (59%), Gaps = 4/164 (2%)
Frame = -3
Query: 1094 EATVYVGGLDPQLSEELLWELFVQSGPVVNVYVPKDRVTGLHLGYGFIEFRSEEDADYAI 915
+A +YVG LDP ++E++L++ F +GP+ + +D VT LGYG++ FR DA++A+
Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76
Query: 914 KVLNMIKIHGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKILYDTFSAFGGVASNP 738
+N I+GKP R+ + D + G N+FI NLD +D + L+ FSAFG + S
Sbjct: 77 NTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 737 KIMRDPDTGNSRGFGFISYDSFDASDAAIEAMTGQYLCNRQITV 606
+ D S+G+ ++ +DS A++ AI M G L NRQ+ V
Sbjct: 137 VVC---DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes
GN=PABPC5 PE=3 SV=1
Length = 382
Score = 113 bits (281), Expect = 4e-024
Identities = 61/164 (37%), Positives = 97/164 (59%), Gaps = 4/164 (2%)
Frame = -3
Query: 1094 EATVYVGGLDPQLSEELLWELFVQSGPVVNVYVPKDRVTGLHLGYGFIEFRSEEDADYAI 915
+A +YVG LDP ++E++L++ F +GP+ + +D VT LGYG++ FR DA++A+
Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76
Query: 914 KVLNMIKIHGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKILYDTFSAFGGVASNP 738
+N I+GKP R+ + D + G N+FI NLD +D + L+ FSAFG + S
Sbjct: 77 NTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 737 KIMRDPDTGNSRGFGFISYDSFDASDAAIEAMTGQYLCNRQITV 606
+ D S+G+ ++ +DS A++ AI M G L NRQ+ V
Sbjct: 137 VVC---DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus
GN=PABPC5 PE=3 SV=1
Length = 382
Score = 113 bits (281), Expect = 4e-024
Identities = 61/164 (37%), Positives = 97/164 (59%), Gaps = 4/164 (2%)
Frame = -3
Query: 1094 EATVYVGGLDPQLSEELLWELFVQSGPVVNVYVPKDRVTGLHLGYGFIEFRSEEDADYAI 915
+A +YVG LDP ++E++L++ F +GP+ + +D VT LGYG++ FR DA++A+
Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76
Query: 914 KVLNMIKIHGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKILYDTFSAFGGVASNP 738
+N I+GKP R+ + D + G N+FI NLD +D + L+ FSAFG + S
Sbjct: 77 NTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 737 KIMRDPDTGNSRGFGFISYDSFDASDAAIEAMTGQYLCNRQITV 606
+ D S+G+ ++ +DS A++ AI M G L NRQ+ V
Sbjct: 137 VVC---DDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYV 177
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster
GN=pAbp PE=1 SV=3
Length = 634
Score = 112 bits (280), Expect = 5e-024
Identities = 64/188 (34%), Positives = 109/188 (57%), Gaps = 6/188 (3%)
Frame = -3
Query: 1091 ATVYVGGLDPQLSEELLWELFVQSGPVVNVYVPKDRVTGLHLGYGFIEFRSEEDADYAIK 912
A++YVG L ++E L++ F +GPV+++ V +D +T LGY ++ F+ DA+ A+
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 911 VLNMIKIHGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKILYDTFSAFGGVASNPK 735
+N + KPIR+ + +D G N+FI NLD +D K +YDTFSAFG + S K
Sbjct: 62 TMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILS-CK 120
Query: 734 IMRDPDTGNSRGFGFISYDSFDASDAAIEAMTGQYLCNRQITVSYAYKKDTKGERHGTPA 555
+ D + GNS+G+GF+ +++ +A++ +I+ + G L +++ Y K + ER
Sbjct: 121 VATD-EKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKV---YVGKFIPRKEREKELG 176
Query: 554 ERLLAATN 531
E+ TN
Sbjct: 177 EKAKLFTN 184
>sp|Q99181|HSH49_YEAST Protein HSH49 OS=Saccharomyces cerevisiae GN=HSH49 PE=1
SV=1
Length = 213
Score = 79 bits (194), Expect = 4e-014
Identities = 35/90 (38%), Positives = 63/90 (70%), Gaps = 1/90 (1%)
Frame = -3
Query: 1088 TVYVGGLDPQLSEELLWELFVQSGPVVNVYVPKDRVTGLHLGYGFIEFRSEEDADYAIKV 909
TVYVG +DP++++E L+ELF+Q PV+ + PKD+V + GY FIEF ++ DA YAIK+
Sbjct: 10 TVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKI 69
Query: 908 L-NMIKIHGKPIRVNKASQDKKSLDVGANL 822
+ N ++++ + I+V + + + ++ +N+
Sbjct: 70 MNNTVRLYDRLIKVRQVTNSTGTTNLPSNI 99
>sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E OS=Drosophila
melanogaster GN=cyp33 PE=1 SV=1
Length = 300
Score = 63 bits (152), Expect = 3e-009
Identities = 31/80 (38%), Positives = 48/80 (60%)
Frame = -3
Query: 1100 NQEATVYVGGLDPQLSEELLWELFVQSGPVVNVYVPKDRVTGLHLGYGFIEFRSEEDADY 921
N + T+YVGGL +++E LL F+ G + ++ +P D + H G+ FIE+ EDA
Sbjct: 3 NDKRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAA 62
Query: 920 AIKVLNMIKIHGKPIRVNKA 861
AI +N ++ G+ IRVN A
Sbjct: 63 AIDNMNDSELCGRTIRVNLA 82
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus
GN=CSTF2 PE=2 SV=1
Length = 572
Score = 61 bits (147), Expect = 1e-008
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 5/92 (5%)
Frame = -3
Query: 1088 TVYVGGLDPQLSEELLWELFVQSGPVVNVYVPKDRVTGLHLGYGFIEFRSEEDADYAIKV 909
+V+VG + + +EE L ++F + GPVV+ + DR TG GYGF E++ +E A A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 908 LNMIKIHGKPIRVNKASQDK-----KSLDVGA 828
LN + G+ +RV+ A+ +K KSL GA
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGTGA 108
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens
GN=CSTF2 PE=1 SV=1
Length = 577
Score = 61 bits (147), Expect = 1e-008
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 5/92 (5%)
Frame = -3
Query: 1088 TVYVGGLDPQLSEELLWELFVQSGPVVNVYVPKDRVTGLHLGYGFIEFRSEEDADYAIKV 909
+V+VG + + +EE L ++F + GPVV+ + DR TG GYGF E++ +E A A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 908 LNMIKIHGKPIRVNKASQDK-----KSLDVGA 828
LN + G+ +RV+ A+ +K KSL GA
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGTGA 108
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus
GN=Cstf2 PE=1 SV=2
Length = 580
Score = 61 bits (147), Expect = 1e-008
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 5/92 (5%)
Frame = -3
Query: 1088 TVYVGGLDPQLSEELLWELFVQSGPVVNVYVPKDRVTGLHLGYGFIEFRSEEDADYAIKV 909
+V+VG + + +EE L ++F + GPVV+ + DR TG GYGF E++ +E A A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 908 LNMIKIHGKPIRVNKASQDK-----KSLDVGA 828
LN + G+ +RV+ A+ +K KSL GA
Sbjct: 77 LNGREFSGRALRVDNAASEKNKEELKSLGTGA 108
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,248,888,565
Number of Sequences: 518415
Number of Extensions: 132248888565
Number of Successful Extensions: 812634680
Number of sequences better than 0.0: 0
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