BLASTX 7.6.2
Query= UN32902 /QuerySize=1252
(1251 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q09704|RRP4_SCHPO Exosome complex component rrp4 OS=Schizosac... 189 5e-047
sp|Q8VBV3|EXOS2_MOUSE Exosome complex exonuclease RRP4 OS=Mus mu... 181 9e-045
sp|Q2KID0|EXOS2_BOVIN Exosome complex exonuclease RRP4 OS=Bos ta... 181 1e-044
sp|Q13868|EXOS2_HUMAN Exosome complex exonuclease RRP4 OS=Homo s... 179 3e-044
sp|P38792|RRP4_YEAST Exosome complex component RRP4 OS=Saccharom... 153 3e-036
>sp|Q09704|RRP4_SCHPO Exosome complex component rrp4 OS=Schizosaccharomyces
pombe GN=rrp4 PE=2 SV=1
Length = 329
Score = 189 bits (478), Expect = 5e-047
Identities = 101/244 (41%), Positives = 149/244 (61%), Gaps = 1/244 (0%)
Frame = -3
Query: 1069 IVTDTIPVNHEDAFLKGHGTSEVEGELLATVCGVVERVDKLVYVRTLRARYKP*VGDIVV 890
+VT V + F++GHGT +G + A+V G V+RV+KL+ V+ LR++Y P +GD+++
Sbjct: 57 LVTPGQLVTDDPQFMRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLII 116
Query: 889 GRIIEVAQKRWTVELNFTQDGVLMLSSMNMPDGSQRRRTSVDELNMRNIFVEHDVVCAEV 710
G+I EV KRW V++ Q+ VLMLSS+N+P G QRR+ DEL MR+ F E D++ AEV
Sbjct: 117 GKIAEVQPKRWKVDIGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEV 176
Query: 709 RSIQHDGSLQLHARSQKYGKLEKGQLLKVDPYLVKRSKHHFHYIESLGIDLIIGCNGFIW 530
+ DGS+ +H RS KYGKL G LKV P LV RSK H + + G+D+I+ NG++W
Sbjct: 177 QQYFSDGSVSIHTRSLKYGKLRNGVFLKVPPALVVRSKSHAYALAG-GVDIILSVNGYVW 235
Query: 529 VGEHVEIRDPVMIDDQKDDEMMISSSSKEQSHTPLETRQNICRIGNAIRVLSNLGFTVTV 350
V +H E + + + ++E S S E TR NI R+ I+ L++ +T
Sbjct: 236 VSKHNENQHSSVSITRLEEEASESIYSNENDEIDGYTRLNISRVSICIKGLASRSLPLTQ 295
Query: 349 EVIT 338
IT
Sbjct: 296 ASIT 299
>sp|Q8VBV3|EXOS2_MOUSE Exosome complex exonuclease RRP4 OS=Mus musculus
GN=Exosc2 PE=2 SV=1
Length = 293
Score = 181 bits (459), Expect = 9e-045
Identities = 98/190 (51%), Positives = 128/190 (67%), Gaps = 3/190 (1%)
Frame = -3
Query: 1072 VIVTDTIPVNHEDAFLKGHGTSEVEGELLATVCGVVERVDKLVYVRTLRARYKP*VGDIV 893
V+ DTI + F++GHGT E +L+A+V G VERV+KL+ V+ L+ RY VGDIV
Sbjct: 27 VVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIV 84
Query: 892 VGRIIEVAQKRWTVELNFTQDGVLMLSSMNMPDGSQRRRTSVDELNMRNIFVEHDVVCAE 713
VGRI EV QKRW VE N D VL+LSSMN+P G RRR++ DEL MR E D++ AE
Sbjct: 85 VGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAE 144
Query: 712 VRSIQHDGSLQLHARSQKYGKLEKGQLLKVDPYLVKRSKHHFHYIESLGIDLIIGCNGFI 533
V+++ DG++ LH RS KYGKL +G L++V P LVKR K HFH + G +I+G NGFI
Sbjct: 145 VQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFI 203
Query: 532 WVGEHVEIRD 503
W+ E +D
Sbjct: 204 WIYPTPEHKD 213
>sp|Q2KID0|EXOS2_BOVIN Exosome complex exonuclease RRP4 OS=Bos taurus GN=EXOSC2
PE=2 SV=1
Length = 293
Score = 181 bits (458), Expect = 1e-044
Identities = 97/182 (53%), Positives = 125/182 (68%), Gaps = 3/182 (1%)
Frame = -3
Query: 1072 VIVTDTIPVNHEDAFLKGHGTSEVEGELLATVCGVVERVDKLVYVRTLRARYKP*VGDIV 893
V+ DTI + F++GHGT E +L+A+V G VERV+KL+ V+ L+ RY VGDIV
Sbjct: 27 VVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYNGEVGDIV 84
Query: 892 VGRIIEVAQKRWTVELNFTQDGVLMLSSMNMPDGSQRRRTSVDELNMRNIFVEHDVVCAE 713
VGRI EV QKRW VE N D VL+LSSMN+P G RRR++ DEL MR E D++ AE
Sbjct: 85 VGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAE 144
Query: 712 VRSIQHDGSLQLHARSQKYGKLEKGQLLKVDPYLVKRSKHHFHYIESLGIDLIIGCNGFI 533
V+++ DG++ LH RS KYGKL +G L++V P LVKR K HFH + G +I+G NGFI
Sbjct: 145 VQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFI 203
Query: 532 WV 527
WV
Sbjct: 204 WV 205
>sp|Q13868|EXOS2_HUMAN Exosome complex exonuclease RRP4 OS=Homo sapiens
GN=EXOSC2 PE=1 SV=2
Length = 293
Score = 179 bits (454), Expect = 3e-044
Identities = 96/182 (52%), Positives = 125/182 (68%), Gaps = 3/182 (1%)
Frame = -3
Query: 1072 VIVTDTIPVNHEDAFLKGHGTSEVEGELLATVCGVVERVDKLVYVRTLRARYKP*VGDIV 893
V+ DTI + F++GHGT E +L+A+V G VERV+KL+ V+ L+ RY VGDIV
Sbjct: 27 VVPGDTITT--DTGFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTRYIGEVGDIV 84
Query: 892 VGRIIEVAQKRWTVELNFTQDGVLMLSSMNMPDGSQRRRTSVDELNMRNIFVEHDVVCAE 713
VGRI EV QKRW VE N D VL+LSSMN+P G RRR++ DEL MR E D++ AE
Sbjct: 85 VGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAE 144
Query: 712 VRSIQHDGSLQLHARSQKYGKLEKGQLLKVDPYLVKRSKHHFHYIESLGIDLIIGCNGFI 533
V+++ DG++ LH RS KYGKL +G L++V P LVKR K HFH + G +I+G NGFI
Sbjct: 145 VQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFI 203
Query: 532 WV 527
W+
Sbjct: 204 WI 205
>sp|P38792|RRP4_YEAST Exosome complex component RRP4 OS=Saccharomyces cerevisiae
GN=RRP4 PE=1 SV=1
Length = 359
Score = 153 bits (385), Expect = 3e-036
Identities = 87/217 (40%), Positives = 126/217 (58%), Gaps = 7/217 (3%)
Frame = -3
Query: 1099 SSTANSDASVIVTDTIPVNHEDAFLKGHGTSEVEGELLATVCGVVERVDKLVYVRTLRAR 920
S++ + S IVT V + +++GHGT ++ ++V G V RV++L+ V L+ R
Sbjct: 44 SASKSESDSQIVTPGELVTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGR 103
Query: 919 YKP*VGDIVVGRIIEVAQKRWTVELNFTQDGVLMLSSMNMPDGSQRRRTSVDELNMRNIF 740
Y P GD VVGRI EV KRW V++ Q VLML S+N+P G RR++ DEL MR+
Sbjct: 104 YAPETGDHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSFL 163
Query: 739 VEHDVVCAEVRSIQHDGSLQLHARSQKYGKLEKGQLLKVDPYLVKRSKHHFHYIESLGID 560
E D++ AEV+S+ DGS LH RS KYGKL G +V L+ R+K+H H + I
Sbjct: 164 KEGDLLNAEVQSLFQDGSASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPG-NIT 222
Query: 559 LIIGCNGFIWVGEHVEIRDPVMIDDQKDDEMMISSSS 449
+++G NG+IW +R +D +D +SSS
Sbjct: 223 VVLGVNGYIW------LRKTSQMDLARDTPSANNSSS 253
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,248,888,565
Number of Sequences: 518415
Number of Extensions: 132248888565
Number of Successful Extensions: 812634680
Number of sequences better than 0.0: 0
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