BLASTX 7.6.2
Query= UN34186 /QuerySize=1063
(1062 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G43730.1 | Symbols: | FUNCTIONS IN: molecular... 75 6e-014
TAIR9_protein||AT5G18880.1 | Symbols: | FUNCTIONS IN: molecular... 75 6e-014
TAIR9_protein||AT1G60720.1 | Symbols: | FUNCTIONS IN: molecular... 66 4e-011
TAIR9_protein||AT4G04650.1 | Symbols: | FUNCTIONS IN: molecular... 64 2e-010
TAIR9_protein||AT4G05095.1 | Symbols: | unknown protein | chr4:... 59 4e-009
TAIR9_protein||AT4G10613.1 | Symbols: | CONTAINS InterPro DOMAI... 54 2e-007
TAIR9_protein||AT1G45063.1 | Symbols: | copper ion binding / el... 53 3e-007
TAIR9_protein||AT3G24255.1 | Symbols: | FUNCTIONS IN: molecular... 53 3e-007
TAIR9_protein||AT2G02520.1 | Symbols: | FUNCTIONS IN: molecular... 51 1e-006
TAIR9_protein||AT3G25720.1 | Symbols: | FUNCTIONS IN: molecular... 50 3e-006
>TAIR9_protein||AT1G43730.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed
DNA polymerase (reverse transcriptase), related (InterPro:IPR015706);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G04650.1); Has 562 Blast hits to 549 proteins in 16 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 562; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). |
chr1:16508723-16509784 REVERSE
Length = 321
Score = 75 bits (183), Expect = 6e-014
Identities = 43/104 (41%), Positives = 53/104 (50%), Gaps = 11/104 (10%)
Frame = -2
Query: 647 VACRNRLDTGDRMRQWGHT--QICLLCGEPDETRDHLFFACPFTYTIWTMLMAPFLAGRI 474
V NRL T DR+R WG + +CLLC DE+R HLFF CPF +W F GR
Sbjct: 170 VVAWNRLHTRDRLRSWGLSIPAVCLLCNSHDESRAHLFFECPFCGAVWR-----FFTGRA 224
Query: 473 N----PDWSRTIASLRNNRLPKIDTQIVKMTFQASIYWTWRERN 354
N + L N K T I+++ FQA +Y WRERN
Sbjct: 225 NLFPPAQLMYCLIWLLNPSRDKNTTLIIRLAFQAYVYAIWRERN 268
>TAIR9_protein||AT5G18880.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed
DNA polymerase (reverse transcriptase), related (InterPro:IPR015706);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G04650.1); Has 393 Blast hits to 389 proteins in 16 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 393; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:6300535-6301422
REVERSE
Length = 296
Score = 75 bits (183), Expect = 6e-014
Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 7/125 (5%)
Frame = -2
Query: 632 RLDTGDRMRQWGHT--QICLLCGEPDETRDHLFFACPFTYTIWTMLMAPFLAGRINPDWS 459
RL T DR+R WG +LC DET HLFF C F+ IW + F R +P +
Sbjct: 151 RLPTRDRLRGWGMNIPSSWVLCSNGDETHAHLFFECSFSLAIWEFFASKF---RPSPPFG 207
Query: 458 RTIASLRNNRLP--KIDTQIVKMTFQASIYWTWRERNGRRYLNPPHSAVYIARSVYREMQ 285
AS +LP T I+K+ Q+++Y W+ERN R + + SA + ++ R M+
Sbjct: 208 LPAASSWILQLPLRSHSTTILKLLLQSAVYHVWKERNARIFTSISSSASSLRLAIDRTMR 267
Query: 284 NRLIA 270
NRL++
Sbjct: 268 NRLLS 272
Score = 52 bits (124), Expect = 4e-007
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = -3
Query: 793 LWKQSQDTYEERFVSKATWEQLRSTHSVVAWSNIVWFPQALPRQAFITW 647
LW+ + +Y F S+ TWEQ+R V W+ +VWF + +PR + ITW
Sbjct: 97 LWRNAAGSYLPSFSSRDTWEQIRVHSPTVPWAKVVWFKEYIPRFSLITW 145
>TAIR9_protein||AT1G60720.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro
DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase), related
(InterPro:IPR015706); BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G33710.1); Has 408 Blast hits to 400 proteins
in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 408; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
chr1:22357072-22357941 FORWARD
Length = 290
Score = 66 bits (159), Expect = 4e-011
Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 4/130 (3%)
Frame = -2
Query: 635 NRLDTGDRMRQWGHTQI--CLLCGEPDETRDHLFFACPFTYTIWTMLMAPFL-AGRINPD 465
+RL T R+ WGH Q C LC E+RDHL F+C F +W + + R+
Sbjct: 150 DRLPTRQRLASWGHIQSFDCCLCTIETESRDHLLFSCEFAAQVWRLAFSRLCPRQRLFCS 209
Query: 464 WSRTIASLRNNRLPKIDTQIVKMTFQASIYWTWRERNGRRYLNPPHSAVYIARSVYREMQ 285
W+ ++ +R++ + + K++ A IY WR+RN + N + + I + V RE++
Sbjct: 210 WAELLSWMRSSS-SSAPSLLRKVSAHAIIYNIWRQRNNVLHNNLRIAPIIIFKIVDREIR 268
Query: 284 NRLIALHHGK 255
N + + +H K
Sbjct: 269 NIISSRYHRK 278
>TAIR9_protein||AT4G04650.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: response to cold; LOCATED IN: stromule; CONTAINS
InterPro DOMAIN/s: RNA-directed DNA polymerase (reverse transcriptase),
related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G43730.1); Has 608 Blast hits to 598
proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 608; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr4:2353989-2355213 REVERSE
Length = 333
Score = 64 bits (153), Expect = 2e-010
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 19/134 (14%)
Frame = -2
Query: 647 VACRNRLDTGDRMRQWGHT--QICLLCGEPDETRDHLFFACPFTYTIWTMLMAPFLAGRI 474
V NRL T DR++ WG + CLLC D++R HLFF C F+ +W A + +
Sbjct: 148 VVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFFECQFSGVVWRFFTA---STNL 204
Query: 473 NP--------DWSRTIASLRNNRLPKIDTQIVKMTFQASIYWTWRERNGRRYLNPPHSAV 318
NP +W + + +N L I+++ F + +Y WRERN R + S
Sbjct: 205 NPPAQLMDCLNWLLSPSREKNICL------IIRLAFHSCVYAIWRERNQRLHSGVSRSTE 258
Query: 317 YIARSVYREMQNRL 276
I + + ++ RL
Sbjct: 259 SILKDIQLIIRARL 272
>TAIR9_protein||AT4G05095.1 | Symbols: | unknown protein | chr4:2613798-2614214
REVERSE
Length = 139
Score = 59 bits (142), Expect = 4e-009
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Frame = -2
Query: 611 MRQWGHT--QICLLCGEPDETRDHLFFACPFTYTIWTMLMAPFLAGRINPDWSRTIAS-- 444
MR+WG + C+LC E R+HLFF C ++ +W M F A P +
Sbjct: 1 MRRWGLSIPSDCVLCSGNAEFREHLFFGCGVSFAVWGNFM--FRASLTPPLLFMDCLTWV 58
Query: 443 LRNNRLPKIDTQIVKMTFQASIYWTWRERNGRRYLNPPHSAVYIARSV 300
L +R P I + I+K+ FQASIY+ W+ERN R + + S+ I + +
Sbjct: 59 LSPSRDPNI-SLIIKLVFQASIYFLWKERNRRLHDHASRSSTAIIKEI 105
>TAIR9_protein||AT4G10613.1 | Symbols: | CONTAINS InterPro DOMAIN/s:
RNA-directed DNA polymerase (reverse transcriptase), related
(InterPro:IPR015706); BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G33710.1); Has 210 Blast hits to 210 proteins
in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 210; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
chr4:6561039-6561479 FORWARD
Length = 147
Score = 54 bits (127), Expect = 2e-007
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Frame = -2
Query: 635 NRLDTGDRMRQWG--HTQICLLCGEPDETRDHLFFACPFTYTIWTMLMAPFLAGRINPDW 462
+RL T R+ WG + +C LC + ETRDHL C F+ +IW M+ A R+ P
Sbjct: 7 DRLPTRARLVSWGLQISPLCCLCSQSVETRDHLILTCGFSSSIWNMVQARL---RLQPVQ 63
Query: 461 SRTIASLRNNRLPKIDTQ-----IVKMTFQASIYWTWRERNGRRYLNPPHSAVYIARSVY 297
R SL + K+ T I K+ QA++ W++RN + I +++
Sbjct: 64 FRVWESLLS--WIKLSTASSPSIIRKLVAQATVCAIWKQRNNLLHNLQDILPSIIFKNID 121
Query: 296 REMQNRLIALHH 261
RE+ N + A H
Sbjct: 122 REIINSINARCH 133
>TAIR9_protein||AT1G45063.1 | Symbols: | copper ion binding / electron carrier
| chr1:17033335-17034886 REVERSE
Length = 370
Score = 53 bits (126), Expect = 3e-007
Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = -2
Query: 638 RNRLDTGDRMRQWG--HTQICLLCGEPDETRDHLFFACPFTYTIWT 507
RNRL DR WG +CLLC DETR H+FF CPF++ +W+
Sbjct: 264 RNRLHICDRFISWGIQVPSLCLLCNALDETRQHVFFDCPFSHEVWS 309
>TAIR9_protein||AT3G24255.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed
DNA polymerase (reverse transcriptase), related (InterPro:IPR015706);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G23910.1); Has 2302 Blast hits to 2235 proteins in 74 species:
Archae - 4; Bacteria - 15; Metazoa - 871; Fungi - 12; Plants - 1295;
Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). |
chr3:8789471-8793208 FORWARD
Length = 747
Score = 53 bits (126), Expect = 3e-007
Identities = 24/44 (54%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = -2
Query: 647 VACRNRLDTGDRMRQW--GHTQICLLCGEPDETRDHLFFACPFT 522
+A +NRL TGDRM W G C+LC ETRDHLFF CP++
Sbjct: 303 IAIKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYS 346
>TAIR9_protein||AT2G02520.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: leaf whorl, stamen, leaf;
EXPRESSED DURING: LP.02 two leaves visible, petal differentiation and
expansion stage; CONTAINS InterPro DOMAIN/s: RNA-directed DNA
polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G43730.1); Has 338 Blast hits to 336 proteins in 13 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 338; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:676771-678145
REVERSE
Length = 212
Score = 51 bits (121), Expect = 1e-006
Identities = 24/48 (50%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = -2
Query: 647 VACRNRLDTGDRMRQWG--HTQICLLCGEPDETRDHLFFACPFTYTIW 510
V R+RL T DRM WG +CL C DETR HLFF C F +W
Sbjct: 62 VNMRHRLHTKDRMISWGFIFPPLCLFCNTHDETRQHLFFDCEFAREVW 109
>TAIR9_protein||AT3G25720.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA-directed
DNA polymerase (reverse transcriptase), related (InterPro:IPR015706);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G10613.1); Has 363 Blast hits to 328 proteins in 13 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 363; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:9380234-9381405
FORWARD
Length = 283
Score = 50 bits (117), Expect = 3e-006
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Frame = -2
Query: 602 WG--HTQICLLCGEPDETRDHLFFACPFTYTIWTMLMAPF-LAGRINPDWSRTIASLRNN 432
WG + +C LC ETRDHL C F+ +W+ + + L I +W+ + +R +
Sbjct: 154 WGLPVSPLCCLCSCAPETRDHLLLGCSFSKALWSSVQSRLRLHSLIFLNWAELLLWIRRS 213
Query: 431 RLPKIDTQIVKMTFQASIYWTWRERNGRRYLNPPHSAVYIARSVYREMQNRLIALHHGK 255
T + K+ + +Y TW++RN + + + + + R++ N + A H K
Sbjct: 214 STSAPST-LRKLVAHSVVYATWKQRNNMLHNSHHLDPASVFKIIDRKIINSINARRHKK 271
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,839,547,426
Number of Sequences: 33410
Number of Extensions: 17839547426
Number of Successful Extensions: 577983624
Number of sequences better than 0.0: 0
|
