BLASTX 7.6.2
Query= UN34690 /QuerySize=1446
(1445 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O75494|SF13A_HUMAN Splicing factor, arginine/serine-rich 13A ... 86 8e-016
sp|Q9R0U0|SF13A_MOUSE Splicing factor, arginine/serine-rich 13A ... 86 8e-016
sp|Q8WXF0|SF13B_HUMAN Splicing factor, arginine/serine-rich 13B ... 67 4e-010
sp|Q8BTI8|SRRM2_MOUSE Serine/arginine repetitive matrix protein ... 55 9e-007
sp|Q08170|SFRS4_HUMAN Splicing factor, arginine/serine-rich 4 OS... 54 3e-006
sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein ... 54 3e-006
>sp|O75494|SF13A_HUMAN Splicing factor, arginine/serine-rich 13A OS=Homo sapiens
GN=SFRS13A PE=1 SV=1
Length = 262
Score = 86 bits (210), Expect = 8e-016
Identities = 59/144 (40%), Positives = 79/144 (54%), Gaps = 8/144 (5%)
Frame = -3
Query: 681 REPRGFGFVQYYDPDDAADAKYHLDGYVLLGREITVVFAEENRKKPSEMRERSS*RIVLL 502
R PRGF +VQ+ D DA DA ++LD + GR+I + FA+ +RK P++M+ +
Sbjct: 48 RRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRN---- 103
Query: 501 VNFRGRTSTRSPYGYSRSPGYSRSPNYRRSYSRSPVYRRSYS--RSPYDERHRSSRSVSP 328
V R Y SRS Y R + RS+ + YRRSYS S R R SRS S
Sbjct: 104 VYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYN--YRRSYSPRNSRPTGRPRRSRSHSD 161
Query: 327 GDRRRSYSRSSSRSRYKSRSRSQS 256
DR + +RS SRS+ SRSRS+S
Sbjct: 162 NDRFKHRNRSFSRSKSNSRSRSKS 185
Score = 54 bits (127), Expect = 3e-006
Identities = 23/42 (54%), Positives = 31/42 (73%)
Frame = -2
Query: 1270 RDPPTSLLVRNLRLDCRPDDLRRPFGRFGRLKDIYIPRNYYT 1145
R P TSL VRN+ D R +DLRR FGR+G + D+Y+P ++YT
Sbjct: 6 RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYT 47
>sp|Q9R0U0|SF13A_MOUSE Splicing factor, arginine/serine-rich 13A OS=Mus musculus
GN=Sfrs13a PE=1 SV=2
Length = 262
Score = 86 bits (210), Expect = 8e-016
Identities = 59/144 (40%), Positives = 79/144 (54%), Gaps = 8/144 (5%)
Frame = -3
Query: 681 REPRGFGFVQYYDPDDAADAKYHLDGYVLLGREITVVFAEENRKKPSEMRERSS*RIVLL 502
R PRGF +VQ+ D DA DA ++LD + GR+I + FA+ +RK P++M+ +
Sbjct: 48 RRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRN---- 103
Query: 501 VNFRGRTSTRSPYGYSRSPGYSRSPNYRRSYSRSPVYRRSYS--RSPYDERHRSSRSVSP 328
V R Y SRS Y R + RS+ + YRRSYS S R R SRS S
Sbjct: 104 VYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYN--YRRSYSPRNSRPTGRPRRSRSHSD 161
Query: 327 GDRRRSYSRSSSRSRYKSRSRSQS 256
DR + +RS SRS+ SRSRS+S
Sbjct: 162 NDRFKHRNRSFSRSKSNSRSRSKS 185
Score = 54 bits (127), Expect = 3e-006
Identities = 23/42 (54%), Positives = 31/42 (73%)
Frame = -2
Query: 1270 RDPPTSLLVRNLRLDCRPDDLRRPFGRFGRLKDIYIPRNYYT 1145
R P TSL VRN+ D R +DLRR FGR+G + D+Y+P ++YT
Sbjct: 6 RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYT 47
>sp|Q8WXF0|SF13B_HUMAN Splicing factor, arginine/serine-rich 13B OS=Homo sapiens
GN=SFRS13B PE=1 SV=1
Length = 261
Score = 67 bits (161), Expect = 4e-010
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 10/153 (6%)
Frame = -3
Query: 681 REPRGFGFVQYYDPDDAADAKYHLDGYVLLGREITVVFAEENRKKPSEMRER-------S 523
R PRGF +VQ+ D DA DA Y+L+ + GR+I + FA+ +RK P +M+ + S
Sbjct: 48 RRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPS 107
Query: 522 S*RIVLLVNFRGRTSTRSPYGYS--RSPGYSRSPNYRRSYSRSPVYRRSYSRSPYDERHR 349
R + R S S +G + RS S + R SYS+S +S R R
Sbjct: 108 DHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQS 167
Query: 348 SSRSVSPGDRRRSYSRS-SSRSRYKSRSRSQSP 253
+ + G R RS S+S RS+ +S+S SP
Sbjct: 168 RTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSP 200
Score = 54 bits (128), Expect = 3e-006
Identities = 23/43 (53%), Positives = 32/43 (74%)
Frame = -2
Query: 1273 SRDPPTSLLVRNLRLDCRPDDLRRPFGRFGRLKDIYIPRNYYT 1145
+R P TSL +RN+ RP+DLRR FGR+G + D+YIP ++YT
Sbjct: 5 TRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYT 47
>sp|Q8BTI8|SRRM2_MOUSE Serine/arginine repetitive matrix protein 2 OS=Mus
musculus GN=Srrm2 PE=1 SV=2
Length = 2703
Score = 55 bits (132), Expect = 9e-007
Identities = 43/110 (39%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Frame = -3
Query: 588 REIT-VVFAEENRKKPSEMRERSS*RIVLLVNFRGRTSTRSPYGYSRSPGYSRSPNYRRS 412
R IT ++ +R + S + R S VN R S SP RS + RRS
Sbjct: 1833 RSITPLISRRRSRSRTSPVSRRRS----RSVNRRRSRSRASPVSRRRSRSRTPPVTRRRS 1888
Query: 411 YSRSPVYRRSYSRSPYDERHRSSRSVSPGDRRRSYSRSSSRSRYKSRSRS 262
SR+P RRS SR+P R RS P RRRS SR+S +R +SRSR+
Sbjct: 1889 RSRTPTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPVTRRRSRSRT 1938
>sp|Q08170|SFRS4_HUMAN Splicing factor, arginine/serine-rich 4 OS=Homo sapiens
GN=SFRS4 PE=1 SV=2
Length = 494
Score = 54 bits (127), Expect = 3e-006
Identities = 35/62 (56%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Frame = -3
Query: 420 RRSYSRSPVYRRSYSRSPYD--ERHRSSRSVSPGDRRRSYSRSSSRSRYKSRSRSQSPGC 247
RRSYSRS + RS SRS + R RS S S + RS SRS SRSR KSRSRSQS
Sbjct: 182 RRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSR 241
Query: 246 SR 241
S+
Sbjct: 242 SK 243
>sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein 2 OS=Homo
sapiens GN=SRRM2 PE=1 SV=2
Length = 2752
Score = 54 bits (127), Expect = 3e-006
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Frame = -3
Query: 492 RGRTSTRSPYGYSRSPGYSRSPNYRRSYSRSPVYRRSYSRSPYDERHRSSRSVSPGDRRR 313
RGR+ +R+P +R +RSP RRS SRSP R SRS R SRS +P R R
Sbjct: 612 RGRSRSRTP---ARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGR 668
Query: 312 SYSRSSSRSRYKSRSRS 262
S SR+ +R +SRSR+
Sbjct: 669 SRSRTPARRSGRSRSRT 685
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,577,310,443
Number of Sequences: 518415
Number of Extensions: 136577310443
Number of Successful Extensions: 839494199
Number of sequences better than 0.0: 0
|
