BLASTX 7.6.2
Query= UN36675 /QuerySize=973
(972 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G20600.1 | Symbols: | FUNCTIONS IN: molecular... 386 1e-107
>TAIR9_protein||AT5G20600.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small
subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING:
13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52
(InterPro:IPR010301); Has 444 Blast hits to 431 proteins in 151
species: Archae - 0; Bacteria - 10; Metazoa - 196; Fungi - 114; Plants
- 27; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). |
chr5:6966345-6967943 REVERSE
Length = 533
Score = 386 bits (990), Expect = 1e-107
Identities = 182/221 (82%), Positives = 204/221 (92%)
Frame = +1
Query: 112 QQPSPAEENCKSLIKKLASCKQTIRDRSLRTLLRTWLPEQTSIPDEDMRKLWQGIFYCMW 291
+Q P EE+CKSLIKKLASCKQ+IRDRSLRT+LRTWLPEQT I DEDM+KLWQGIFYC+W
Sbjct: 11 EQALPIEEDCKSLIKKLASCKQSIRDRSLRTVLRTWLPEQTEISDEDMKKLWQGIFYCVW 70
Query: 292 HADKSLYQSQLIDRLSAALHSLPLPLSVHYFAVFLFTMRREWSRIDRLRLDKFYLLIRRF 471
HADKSLYQS+LIDRLS+AL SLPLPLS+HYF VFLFTMRREWSRIDRLRLDKFYLLIRRF
Sbjct: 71 HADKSLYQSELIDRLSSALQSLPLPLSIHYFTVFLFTMRREWSRIDRLRLDKFYLLIRRF 130
Query: 472 LHGLFALSDSSSWDLDLTRRLVGVLFDGTFLAGDKFRGNGVNYHVASVFVEEVRSFLPLR 651
LHG F+L DS+SWDL+ TRRL+G+LFDGT LA DKF+GNGVNYH+ S FVEE+R FLPLR
Sbjct: 131 LHGFFSLIDSNSWDLEFTRRLMGILFDGTLLADDKFQGNGVNYHITSAFVEELRPFLPLR 190
Query: 652 KEVLEILFGPFVRVMGVVGDKVLVGKIKSNLFDELLKMGKR 774
KEVLE+LF PFV++MGVV DK+LVGKIKSNLFDELLKMGK+
Sbjct: 191 KEVLELLFAPFVKIMGVVNDKILVGKIKSNLFDELLKMGKK 231
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,722,494,304
Number of Sequences: 33410
Number of Extensions: 18722494304
Number of Successful Extensions: 599467784
Number of sequences better than 0.0: 0
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