BLASTX 7.6.2

Query= UN36848 /QuerySize=977
        (976 letters)

Database: UniProt/SwissProt;
          518,415 sequences; 182,829,261 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein...     61   1e-008
sp|A9LNK9|CPSF_ARATH Cleavage and polyadenylation specificity fa...     58   8e-008
sp|Q5R746|YTDC2_PONAB YTH domain-containing protein 2 OS=Pongo a...     57   2e-007
sp|B2RR83|YTDC2_MOUSE Probable ATP-dependent RNA helicase YTHDC2...     56   3e-007
sp|Q9H6S0|YTDC2_HUMAN Probable ATP-dependent RNA helicase YTHDC2...     56   4e-007
sp|Q9QY02|YTDC1_RAT YTH domain-containing protein 1 OS=Rattus no...     54   2e-006
sp|Q96MU7|YTDC1_HUMAN YTH domain-containing protein 1 OS=Homo sa...     53   3e-006

>sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein 45 OS=Oryza
        sativa subsp. japonica GN=Os06g0677700 PE=2 SV=1

          Length = 665

 Score =  61 bits (146), Expect = 1e-008
 Identities = 31/87 (35%), Positives = 58/87 (66%), Gaps = 6/87 (6%)
 Frame = +3

Query: 237 RSKEDRKPSSNVERGQFLESWNESKKSK-----PGYQTRYFIIKSLNYDNIQLSLERGIW 401
           + ++ +KP++N ++ Q + + + ++ ++     P   +RYFI+KS N +N+++S+++GIW
Sbjct: 224 QQQQQQKPNTN-DQVQSVPNGSSNQATRIATPLPQGPSRYFIVKSCNRENLEISVQQGIW 282

Query: 402 ATQVMNEPILEGAFHNSGRVVLIFSVN 482
           ATQ  NE  L  AF +   V+LIFS+N
Sbjct: 283 ATQRSNEAKLNEAFESIENVILIFSIN 309

>sp|A9LNK9|CPSF_ARATH Cleavage and polyadenylation specificity factor CPSF30
        OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1

          Length = 631

 Score =  58 bits (139), Expect = 8e-008
 Identities = 28/61 (45%), Positives = 39/61 (63%)
 Frame = +3

Query: 300 NESKKSKPGYQTRYFIIKSLNYDNIQLSLERGIWATQVMNEPILEGAFHNSGRVVLIFSV 479
           N +    P    RYF++KS N +N +LS+++G+WATQ  NE  L  AF +   V+LIFSV
Sbjct: 226 NRTSHPLPQGVNRYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSV 285

Query: 480 N 482
           N
Sbjct: 286 N 286

>sp|Q5R746|YTDC2_PONAB YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2
        PE=2 SV=1

          Length = 671

 Score =  57 bits (135), Expect = 2e-007
 Identities = 28/64 (43%), Positives = 39/64 (60%)
 Frame = +3

Query: 300 NESKKSKPGYQTRYFIIKSLNYDNIQLSLERGIWATQVMNEPILEGAFHNSGRVVLIFSV 479
           ++S   +P    RYFI+KS N  N+++S ++GIW+T   NE  L  AF  S  V L+FSV
Sbjct: 518 SKSPSPRPNMPVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSV 577

Query: 480 NMSG 491
             SG
Sbjct: 578 QGSG 581

>sp|B2RR83|YTDC2_MOUSE Probable ATP-dependent RNA helicase YTHDC2 OS=Mus
        musculus GN=Ythdc2 PE=2 SV=1

          Length = 1445

 Score =  56 bits (134), Expect = 3e-007
 Identities = 28/64 (43%), Positives = 39/64 (60%)
 Frame = +3

Query:  300 NESKKSKPGYQTRYFIIKSLNYDNIQLSLERGIWATQVMNEPILEGAFHNSGRVVLIFSV 479
            ++S   +P    RYFI+KS N  N+++S ++GIW+T   NE  L  AF  S  V L+FSV
Sbjct: 1292 SKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSV 1351

Query:  480 NMSG 491
              SG
Sbjct: 1352 QGSG 1355

>sp|Q9H6S0|YTDC2_HUMAN Probable ATP-dependent RNA helicase YTHDC2 OS=Homo
        sapiens GN=YTHDC2 PE=1 SV=2

          Length = 1430

 Score =  56 bits (133), Expect = 4e-007
 Identities = 28/64 (43%), Positives = 39/64 (60%)
 Frame = +3

Query:  300 NESKKSKPGYQTRYFIIKSLNYDNIQLSLERGIWATQVMNEPILEGAFHNSGRVVLIFSV 479
            ++S   +P    RYFI+KS N  N+++S ++GIW+T   NE  L  AF  S  V L+FSV
Sbjct: 1277 SKSPSPRPNMPVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSV 1336

Query:  480 NMSG 491
              SG
Sbjct: 1337 QGSG 1340

>sp|Q9QY02|YTDC1_RAT YTH domain-containing protein 1 OS=Rattus norvegicus
        GN=Ythdc1 PE=1 SV=1

          Length = 738

 Score =  54 bits (127), Expect = 2e-006
 Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
 Frame = +3

Query: 243 KEDRKPSSNVERGQFLESWNESKKSKPGYQTRYFIIKSLNYDNIQLSLERGIWATQVMNE 422
           K+  K SS+V   + +     SK        R+F+IKS N++N+ L+  +G+W+T  +NE
Sbjct: 331 KKHEKLSSSV---RAVRKDQTSKLKSVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNE 387

Query: 423 PILEGAFHNSGRVVLIFSVNMSGSW 497
             L  AF ++  V+LIFSV  SG +
Sbjct: 388 KKLNLAFRSARSVILIFSVRESGKF 412

>sp|Q96MU7|YTDC1_HUMAN YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1
        PE=1 SV=3

          Length = 727

 Score =  53 bits (126), Expect = 3e-006
 Identities = 24/54 (44%), Positives = 38/54 (70%)
 Frame = +3

Query: 336 RYFIIKSLNYDNIQLSLERGIWATQVMNEPILEGAFHNSGRVVLIFSVNMSGSW 497
           R+F+IKS N++N+ L+  +G+W+T  +NE  L  AF ++  V+LIFSV  SG +
Sbjct: 356 RFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKF 409

  Database: UniProt/SwissProt
    Posted date:  Sat Aug 07 14:36:18 2010
  Number of letters in database: 182,829,261
  Number of sequences in database:  518,415

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,264,384,081
Number of Sequences: 518415
Number of Extensions: 145264384081
Number of Successful Extensions: 900894833
Number of sequences better than 0.0: 0