BLASTX 7.6.2
Query= UN37049 /QuerySize=1340
(1339 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G24090.1 | Symbols: | RNase H domain-containi... 278 5e-075
TAIR9_protein||AT5G51080.1 | Symbols: | RNase H domain-containi... 245 6e-065
TAIR9_protein||AT5G51080.2 | Symbols: | RNase H domain-containi... 245 6e-065
TAIR9_protein||AT5G51080.3 | Symbols: | RNase H domain-containi... 245 6e-065
TAIR9_protein||AT3G01410.1 | Symbols: | RNase H domain-containi... 170 2e-042
TAIR9_protein||AT3G01410.2 | Symbols: | RNase H domain-containi... 170 2e-042
>TAIR9_protein||AT1G24090.1 | Symbols: | RNase H domain-containing protein |
chr1:8520834-8524690 FORWARD
Length = 536
Score = 278 bits (711), Expect = 5e-075
Identities = 148/200 (74%), Positives = 168/200 (84%), Gaps = 9/200 (4%)
Frame = +3
Query: 495 DVFGALMPCLFQEPASSKVKVSQEEEDISEMKSEDMKHD-IPSASTS----SVFDQLKPS 659
D+FGAL PCLFQEPA VKVS E+E SE KS+D K D +PSAS S +++PS
Sbjct: 151 DMFGALTPCLFQEPAPCTVKVS-EDETTSETKSKDDKKDQLPSASISYDPLEKLSKVEPS 209
Query: 660 AVTSDETCFIEFDGASKGNPGLAGAAAVLKTKDGSLICKVRQGLGIATNNAAEYHGLILG 839
A SDETCFIEFDGASKGNPGL+GAAAVLKT+DGSLIC+VRQGLGIATNNAAEYH LILG
Sbjct: 210 AYISDETCFIEFDGASKGNPGLSGAAAVLKTEDGSLICRVRQGLGIATNNAAEYHALILG 269
Query: 840 LRHAIERGYKIIKVKGDSKLICM---QIKGKWKVNNEVLSKLHEEAKQLTKECASFEISH 1010
L++AIE+GYK IKVKGDSKL+CM QIKG+WKVN+EVL+KLH+EAK L +C SFEISH
Sbjct: 270 LKYAIEKGYKNIKVKGDSKLVCMQKQQIKGQWKVNHEVLAKLHKEAKLLCNKCVSFEISH 329
Query: 1011 VLRNLNSAADEQANLAVRLP 1070
VLRNLN+ ADEQANLAVRLP
Sbjct: 330 VLRNLNADADEQANLAVRLP 349
Score = 194 bits (491), Expect = 2e-049
Identities = 103/138 (74%), Positives = 113/138 (81%), Gaps = 5/138 (3%)
Frame = +1
Query: 94 MNCLSHHARSYISLGLLKRSSYVTSKIPWNQCFF-MPSSPCLNPASVVTPLGLSRPHCYS 270
MNCLS HARSYI+LGLLKRSSYV+S IPWN+CFF MPS CL P +V + G+ H YS
Sbjct: 1 MNCLS-HARSYIALGLLKRSSYVSS-IPWNECFFYMPSKSCLKPVAVSSVFGICSVHSYS 58
Query: 271 SRSKAGRSKLL--TAVPVADKEKDAFFVVRKGDVIGIYKDLNDCQAQVGSSVFDPPASVY 444
SRSKA +SK+L T V DKEKDAFFVVRKGDVIGIYKDL+DCQAQVGSSVFD P SVY
Sbjct: 59 SRSKAVKSKMLSSTVVSAVDKEKDAFFVVRKGDVIGIYKDLSDCQAQVGSSVFDLPVSVY 118
Query: 445 KGYSLSKDAEEYLSSVGM 498
KGYSL KD EEYLSSVG+
Sbjct: 119 KGYSLPKDTEEYLSSVGL 136
>TAIR9_protein||AT5G51080.1 | Symbols: | RNase H domain-containing protein |
chr5:20769022-20770675 REVERSE
Length = 323
Score = 245 bits (624), Expect = 6e-065
Identities = 125/162 (77%), Positives = 143/162 (88%), Gaps = 1/162 (0%)
Frame = +3
Query: 612 IPSASTS-SVFDQLKPSAVTSDETCFIEFDGASKGNPGLAGAAAVLKTKDGSLICKVRQG 788
+PSAS S +L+PSA TS ETC IEFDGASKGNPGL+GAAAVLKT+DGSLI K+RQG
Sbjct: 162 LPSASMSVEKLAELEPSADTSYETCIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQG 221
Query: 789 LGIATNNAAEYHGLILGLRHAIERGYKIIKVKGDSKLICMQIKGKWKVNNEVLSKLHEEA 968
LGIATNNAAEYHGLILGL+HAIE+GY IKVK DSKL+CMQ+KG+WKVN+EVLSKLH+EA
Sbjct: 222 LGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEA 281
Query: 969 KQLTKECASFEISHVLRNLNSAADEQANLAVRLPEGQVEVA* 1094
KQL+ +C SFEISHVLR+LNS ADEQAN+A RL EG+VEVA*
Sbjct: 282 KQLSDKCLSFEISHVLRSLNSDADEQANMAARLSEGEVEVA* 323
Score = 168 bits (425), Expect = 7e-042
Identities = 87/131 (66%), Positives = 100/131 (76%), Gaps = 7/131 (5%)
Frame = +1
Query: 115 ARSYISLGLLKRSSYVTSKIPWNQCFFMPSSPCLNPASVVTPLGLSRPHCYSSRSKAGRS 294
ARSYISL L ++SSYVTS IPWNQCF+ L PASV +S HCYSSRSK +S
Sbjct: 7 ARSYISLVLFRKSSYVTSHIPWNQCFYTSLKSSLKPASV----SVSSVHCYSSRSKTAKS 62
Query: 295 KL---LTAVPVADKEKDAFFVVRKGDVIGIYKDLNDCQAQVGSSVFDPPASVYKGYSLSK 465
K+ +V +DKEKDAFFVVRKGD++GIYKDL DCQAQVGSSV+DPP SVYKGYSL K
Sbjct: 63 KMSKSSVSVSDSDKEKDAFFVVRKGDIVGIYKDLIDCQAQVGSSVYDPPVSVYKGYSLLK 122
Query: 466 DAEEYLSSVGM 498
D EE LS+VG+
Sbjct: 123 DTEECLSTVGL 133
>TAIR9_protein||AT5G51080.2 | Symbols: | RNase H domain-containing protein |
chr5:20769022-20770675 REVERSE
Length = 323
Score = 245 bits (624), Expect = 6e-065
Identities = 125/162 (77%), Positives = 143/162 (88%), Gaps = 1/162 (0%)
Frame = +3
Query: 612 IPSASTS-SVFDQLKPSAVTSDETCFIEFDGASKGNPGLAGAAAVLKTKDGSLICKVRQG 788
+PSAS S +L+PSA TS ETC IEFDGASKGNPGL+GAAAVLKT+DGSLI K+RQG
Sbjct: 162 LPSASMSVEKLAELEPSADTSYETCIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQG 221
Query: 789 LGIATNNAAEYHGLILGLRHAIERGYKIIKVKGDSKLICMQIKGKWKVNNEVLSKLHEEA 968
LGIATNNAAEYHGLILGL+HAIE+GY IKVK DSKL+CMQ+KG+WKVN+EVLSKLH+EA
Sbjct: 222 LGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEA 281
Query: 969 KQLTKECASFEISHVLRNLNSAADEQANLAVRLPEGQVEVA* 1094
KQL+ +C SFEISHVLR+LNS ADEQAN+A RL EG+VEVA*
Sbjct: 282 KQLSDKCLSFEISHVLRSLNSDADEQANMAARLSEGEVEVA* 323
Score = 168 bits (425), Expect = 7e-042
Identities = 87/131 (66%), Positives = 100/131 (76%), Gaps = 7/131 (5%)
Frame = +1
Query: 115 ARSYISLGLLKRSSYVTSKIPWNQCFFMPSSPCLNPASVVTPLGLSRPHCYSSRSKAGRS 294
ARSYISL L ++SSYVTS IPWNQCF+ L PASV +S HCYSSRSK +S
Sbjct: 7 ARSYISLVLFRKSSYVTSHIPWNQCFYTSLKSSLKPASV----SVSSVHCYSSRSKTAKS 62
Query: 295 KL---LTAVPVADKEKDAFFVVRKGDVIGIYKDLNDCQAQVGSSVFDPPASVYKGYSLSK 465
K+ +V +DKEKDAFFVVRKGD++GIYKDL DCQAQVGSSV+DPP SVYKGYSL K
Sbjct: 63 KMSKSSVSVSDSDKEKDAFFVVRKGDIVGIYKDLIDCQAQVGSSVYDPPVSVYKGYSLLK 122
Query: 466 DAEEYLSSVGM 498
D EE LS+VG+
Sbjct: 123 DTEECLSTVGL 133
>TAIR9_protein||AT5G51080.3 | Symbols: | RNase H domain-containing protein |
chr5:20769022-20770486 REVERSE
Length = 260
Score = 245 bits (624), Expect = 6e-065
Identities = 125/162 (77%), Positives = 143/162 (88%), Gaps = 1/162 (0%)
Frame = +3
Query: 612 IPSASTS-SVFDQLKPSAVTSDETCFIEFDGASKGNPGLAGAAAVLKTKDGSLICKVRQG 788
+PSAS S +L+PSA TS ETC IEFDGASKGNPGL+GAAAVLKT+DGSLI K+RQG
Sbjct: 99 LPSASMSVEKLAELEPSADTSYETCIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQG 158
Query: 789 LGIATNNAAEYHGLILGLRHAIERGYKIIKVKGDSKLICMQIKGKWKVNNEVLSKLHEEA 968
LGIATNNAAEYHGLILGL+HAIE+GY IKVK DSKL+CMQ+KG+WKVN+EVLSKLH+EA
Sbjct: 159 LGIATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEA 218
Query: 969 KQLTKECASFEISHVLRNLNSAADEQANLAVRLPEGQVEVA* 1094
KQL+ +C SFEISHVLR+LNS ADEQAN+A RL EG+VEVA*
Sbjct: 219 KQLSDKCLSFEISHVLRSLNSDADEQANMAARLSEGEVEVA* 260
Score = 108 bits (268), Expect = 1e-023
Identities = 52/69 (75%), Positives = 59/69 (85%)
Frame = +1
Query: 292 SKLLTAVPVADKEKDAFFVVRKGDVIGIYKDLNDCQAQVGSSVFDPPASVYKGYSLSKDA 471
SK +V +DKEKDAFFVVRKGD++GIYKDL DCQAQVGSSV+DPP SVYKGYSL KD
Sbjct: 2 SKSSVSVSDSDKEKDAFFVVRKGDIVGIYKDLIDCQAQVGSSVYDPPVSVYKGYSLLKDT 61
Query: 472 EEYLSSVGM 498
EE LS+VG+
Sbjct: 62 EECLSTVGL 70
>TAIR9_protein||AT3G01410.1 | Symbols: | RNase H domain-containing protein |
chr3:153650-155439 REVERSE
Length = 295
Score = 170 bits (430), Expect = 2e-042
Identities = 90/212 (42%), Positives = 132/212 (62%), Gaps = 14/212 (6%)
Frame = +3
Query: 495 DVFGALMPCLFQEPASS------KVKVSQEEEDISEMKSEDMKHDIPSASTSSVFDQLK- 653
D FG L+PC Q+P+SS K S+ +D+ +S P D L+
Sbjct: 79 DAFGKLIPCPVQQPSSSQGESLNKSSPSKRLQDMGSGESGSFSPSPPQKQLKIENDMLRR 138
Query: 654 -PSA------VTSDETCFIEFDGASKGNPGLAGAAAVLKTKDGSLICKVRQGLGIATNNA 812
PS+ + +++C IEFDGASKGNPG AGA AVL+ D S++ +R+G+G ATNN
Sbjct: 139 IPSSLLTRTPIRQNDSCTIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNV 198
Query: 813 AEYHGLILGLRHAIERGYKIIKVKGDSKLICMQIKGKWKVNNEVLSKLHEEAKQLTKECA 992
AEY L+LGLR A+++G+K + V GDS L+CMQ++G WK N+ +++L ++AK+L
Sbjct: 199 AEYRALLLGLRSALDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFK 258
Query: 993 SFEISHVLRNLNSAADEQANLAVRLPEGQVEV 1088
+F+I H+ R NS AD+QAN A+ L +GQ +V
Sbjct: 259 TFDIKHIAREKNSEADKQANSAIFLADGQTQV 290
Score = 79 bits (194), Expect = 5e-015
Identities = 37/63 (58%), Positives = 47/63 (74%)
Frame = +1
Query: 322 DKEKDAFFVVRKGDVIGIYKDLNDCQAQVGSSVFDPPASVYKGYSLSKDAEEYLSSVGMC 501
+ EKDAF++VRKGD+IG+Y+ L++CQ Q GSSV P SVYKGY K AE+ LSS G+
Sbjct: 6 EDEKDAFYIVRKGDIIGVYRSLSECQGQAGSSVSHPAMSVYKGYGWPKGAEDLLSSFGIK 65
Query: 502 LAL 510
AL
Sbjct: 66 NAL 68
>TAIR9_protein||AT3G01410.2 | Symbols: | RNase H domain-containing protein |
chr3:153650-155439 REVERSE
Length = 295
Score = 170 bits (430), Expect = 2e-042
Identities = 90/212 (42%), Positives = 132/212 (62%), Gaps = 14/212 (6%)
Frame = +3
Query: 495 DVFGALMPCLFQEPASS------KVKVSQEEEDISEMKSEDMKHDIPSASTSSVFDQLK- 653
D FG L+PC Q+P+SS K S+ +D+ +S P D L+
Sbjct: 79 DAFGKLIPCPVQQPSSSQGESLNKSSPSKRLQDMGSGESGSFSPSPPQKQLKIENDMLRR 138
Query: 654 -PSA------VTSDETCFIEFDGASKGNPGLAGAAAVLKTKDGSLICKVRQGLGIATNNA 812
PS+ + +++C IEFDGASKGNPG AGA AVL+ D S++ +R+G+G ATNN
Sbjct: 139 IPSSLLTRTPIRQNDSCTIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNV 198
Query: 813 AEYHGLILGLRHAIERGYKIIKVKGDSKLICMQIKGKWKVNNEVLSKLHEEAKQLTKECA 992
AEY L+LGLR A+++G+K + V GDS L+CMQ++G WK N+ +++L ++AK+L
Sbjct: 199 AEYRALLLGLRSALDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFK 258
Query: 993 SFEISHVLRNLNSAADEQANLAVRLPEGQVEV 1088
+F+I H+ R NS AD+QAN A+ L +GQ +V
Sbjct: 259 TFDIKHIAREKNSEADKQANSAIFLADGQTQV 290
Score = 79 bits (194), Expect = 5e-015
Identities = 37/63 (58%), Positives = 47/63 (74%)
Frame = +1
Query: 322 DKEKDAFFVVRKGDVIGIYKDLNDCQAQVGSSVFDPPASVYKGYSLSKDAEEYLSSVGMC 501
+ EKDAF++VRKGD+IG+Y+ L++CQ Q GSSV P SVYKGY K AE+ LSS G+
Sbjct: 6 EDEKDAFYIVRKGDIIGVYRSLSECQGQAGSSVSHPAMSVYKGYGWPKGAEDLLSSFGIK 65
Query: 502 LAL 510
AL
Sbjct: 66 NAL 68
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,811,281,329
Number of Sequences: 33410
Number of Extensions: 18811281329
Number of Successful Extensions: 599489487
Number of sequences better than 0.0: 0
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