BLASTX 7.6.2
Query= UN37548 /QuerySize=699
(698 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G06480.1 | Symbols: | DEAD box RNA helicase, ... 236 2e-062
TAIR9_protein||AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34 | SR1;... 57 7e-009
TAIR9_protein||AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34 | SR1;... 57 7e-009
TAIR9_protein||AT1G07350.1 | Symbols: | transformer serine/argi... 56 2e-008
TAIR9_protein||AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34 | SR1;... 55 5e-008
TAIR9_protein||AT4G36980.1 | Symbols: | unknown protein | chr4:... 52 2e-007
TAIR9_protein||AT3G55460.1 | Symbols: SCL30 | SCL30; RNA binding... 52 3e-007
TAIR9_protein||AT4G02430.2 | Symbols: | pre-mRNA splicing facto... 52 4e-007
>TAIR9_protein||AT3G06480.1 | Symbols: | DEAD box RNA helicase, putative |
chr3:1985697-1989666 REVERSE
Length = 1089
Score = 236 bits (600), Expect = 2e-062
Identities = 135/175 (77%), Positives = 138/175 (78%), Gaps = 13/175 (7%)
Frame = +1
Query: 1 GRMNV-GRGGFGRFG-NNNMDGRGFGRGGGRGFSRGGGGGRFDNRRGRSRSRSPDLFRP- 171
G MNV GRGGFGRFG NNNM+ RGFGRG GRGF R G GRFDNRRGRSRSRSPDL RP
Sbjct: 908 GHMNVGGRGGFGRFGNNNNMESRGFGRGSGRGFGR--GVGRFDNRRGRSRSRSPDLVRPR 965
Query: 172 RRSPSYSRSRSR----SYSLSRSRSWSRSRSRSPR----RSGHKRSRSYSRSPSPVYERR 327
RRS SYSRSRSR S S SRSRSWSRSRSRSPR R GH RSRSYSRSPSPVYERR
Sbjct: 966 RRSSSYSRSRSRSGSYSRSRSRSRSWSRSRSRSPRHSRDRGGHNRSRSYSRSPSPVYERR 1025
Query: 328 DRRQRVSGFDIKPPAESVVNPDTVGAAASENVVPAPLFERQGNGVVEFELKPALV 492
DR RVSGFDIKPP ESVVN D AAA ENVVP L ERQGNGVVE E++ ALV
Sbjct: 1026 DRAPRVSGFDIKPPVESVVNLDMNAAAAIENVVPTSLSERQGNGVVESEVEAALV 1080
>TAIR9_protein||AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34 | SR1; RNA binding /
nucleic acid binding / nucleotide binding | chr1:626918-629583 FORWARD
Length = 304
Score = 57 bits (137), Expect = 7e-009
Identities = 42/84 (50%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Frame = +1
Query: 136 RSRSRSPDLFRPRRSPSYSRSRSRSYSLSRSRSWSRSRSRSPRRSGHKRS--RSYSRSPS 309
R SRSP RS S SRSRSR S+SRSRS SRSRSRSP+ +RS +S SRSP
Sbjct: 198 RKDSRSPS---RGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPG 254
Query: 310 PVYERRDRRQRVSGFDIKPPAESV 381
P + R R S + P SV
Sbjct: 255 PRSKSRSPSPRRSRSRSRSPLPSV 278
>TAIR9_protein||AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34 | SR1; RNA binding /
nucleic acid binding / nucleotide binding | chr1:626918-629583 FORWARD
Length = 304
Score = 57 bits (137), Expect = 7e-009
Identities = 42/84 (50%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Frame = +1
Query: 136 RSRSRSPDLFRPRRSPSYSRSRSRSYSLSRSRSWSRSRSRSPRRSGHKRS--RSYSRSPS 309
R SRSP RS S SRSRSR S+SRSRS SRSRSRSP+ +RS +S SRSP
Sbjct: 198 RKDSRSPS---RGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPG 254
Query: 310 PVYERRDRRQRVSGFDIKPPAESV 381
P + R R S + P SV
Sbjct: 255 PRSKSRSPSPRRSRSRSRSPLPSV 278
>TAIR9_protein||AT1G07350.1 | Symbols: | transformer serine/arginine-rich
ribonucleoprotein, putative | chr1:2257732-2260101 REVERSE
Length = 383
Score = 56 bits (133), Expect = 2e-008
Identities = 37/76 (48%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Frame = +1
Query: 127 RRGRSRSRSPDLFRPRRSPSYSRSRSRSYSLSRSRSWSRSRSRSPRRSG----HKRSRSY 294
R R R +SP + PRRS S SRSRSRSYS R RS+S S R R S ++R R Y
Sbjct: 168 RTARGRHKSPS-YSPRRSVSCSRSRSRSYSSDRGRSYSPSYGRRGRSSSYSPFYRRRRFY 226
Query: 295 SRSPSPVYERRDRRQR 342
S S SP + R R+R
Sbjct: 227 SPSRSPSPDDRYNRRR 242
>TAIR9_protein||AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34 | SR1; RNA binding /
nucleic acid binding / nucleotide binding | chr1:626918-628995 FORWARD
Length = 286
Score = 55 bits (130), Expect = 5e-008
Identities = 38/71 (53%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Frame = +1
Query: 136 RSRSRSPDLFRPRRSPSYSRSRSRSYSLSRSRSWSRSRSRSPRRSGHKRS--RSYSRSPS 309
R SRSP RS S SRSRSR S+SRSRS SRSRSRSP+ +RS +S SRSP
Sbjct: 198 RKDSRSPS---RGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPG 254
Query: 310 PVYERRDRRQR 342
P + R R
Sbjct: 255 PRSKSRSPSPR 265
>TAIR9_protein||AT4G36980.1 | Symbols: | unknown protein |
chr4:17433861-17437012 REVERSE
Length = 556
Score = 52 bits (124), Expect = 2e-007
Identities = 38/75 (50%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1
Query: 115 RFDNRRGRSRSRSPDLFRPRRSPSYSRSRSRSYSLSRSRSWSRSRSRSPRRSGHKRSRSY 294
R R RSRSRS P R SRSRS S S R SRSRSRSP RS RS
Sbjct: 476 RLSRNRQRSRSRSISRSPPPRRHRRSRSRSGSRSRRSRRHSSRSRSRSPSRS-LSRSPKR 534
Query: 295 SRSPSPVYERRDRRQ 339
SR SP Y R RR+
Sbjct: 535 SRRRSPSYSRSPRRR 549
>TAIR9_protein||AT3G55460.1 | Symbols: SCL30 | SCL30; RNA binding / nucleic acid
binding / nucleotide binding | chr3:20561024-20563502 FORWARD
Length = 263
Score = 52 bits (123), Expect = 3e-007
Identities = 47/115 (40%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Frame = +1
Query: 139 SRSRSPDLFRPRRSPSYSRSRSRSYSLSRSRSWSRSRSRSPRRSGHKRSRSYSRSPSPVY 318
SR R ++ R+ S S SR S RSRS S SRSRSPRR RSR SRS SP
Sbjct: 126 SRKRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSRYRSRSYSPAP 185
Query: 319 ERRDRRQRVSGFDIKPPAESVVNPDTVGAAASENVVPAPLFERQGNGVVEFELKP 483
RR R G + + + +P GAAA+ AP +R NG E KP
Sbjct: 186 RRRGGPPR--GEEDENYSRRSYSPGYEGAAAA-----AP--DRDRNGDNEIREKP 231
>TAIR9_protein||AT4G02430.2 | Symbols: | pre-mRNA splicing factor, putative /
SR1 protein, putative | chr4:1069186-1071313 FORWARD
Length = 279
Score = 52 bits (122), Expect = 4e-007
Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Frame = +1
Query: 118 FDNRRGRSRSRSPDLFRPRRSPSYSRSRSRSYSLSRSRSWSRSRSRSPRRSGHKRSRSYS 297
+D+RR SRSP RS S SRSR RS S SRSRS SRS+SRSP+ +RS + S
Sbjct: 193 YDSRRD---SRSPS---RGRSYSKSRSRGRSPSRSRSRSRSRSKSRSPKAKSLRRSPAKS 246
Query: 298 RSPSPVYERRDRRQRVS 348
S SP R + + +S
Sbjct: 247 TSRSPRSRSRSKSRSLS 263
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,949,492,630
Number of Sequences: 33410
Number of Extensions: 18949492630
Number of Successful Extensions: 604700959
Number of sequences better than 0.0: 0
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