BLASTX 7.6.2
Query= UN37643 /QuerySize=991
(990 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G53700.1 | Symbols: | INVOLVED IN: biological... 107 1e-023
TAIR9_protein||AT5G03495.1 | Symbols: | nucleotide binding | ch... 99 3e-021
TAIR9_protein||AT5G03480.1 | Symbols: | nucleic acid binding / ... 77 2e-014
TAIR9_protein||AT3G09160.1 | Symbols: | RNA recognition motif (... 68 7e-012
TAIR9_protein||AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1... 62 5e-010
TAIR9_protein||AT5G05430.1 | Symbols: | FUNCTIONS IN: molecular... 53 2e-007
>TAIR9_protein||AT5G53700.1 | Symbols: | INVOLVED IN: biological_process
unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: nucleic acid binding / nucleotide binding
(TAIR:AT5G03480.1); Has 74 Blast hits to 54 proteins in 11 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses
- 0; Other Eukaryotes - 6 (source: NCBI BLink). |
chr5:21801221-21802546 FORWARD
Length = 252
Score = 107 bits (266), Expect = 1e-023
Identities = 88/258 (34%), Positives = 134/258 (51%), Gaps = 20/258 (7%)
Frame = +3
Query: 45 SAIKGLELNCRDADIRKSSISRISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPVPL 224
SA++GLE +D + RK S+ISVEGYDTS+ + AL +HFASCG I+ + VP
Sbjct: 4 SAVRGLE--SKDTNNRK-CFSKISVEGYDTSVHEFPLKLALAKHFASCGKIVDIDVPRDF 60
Query: 225 DVDVTGVILCRYSLIYVNEEDEEKALKLGGSDMGGRILQINPYPFHENHLDDYLAPMKEG 404
+ L E +KAL+L G+D+GG + + P + + D +G
Sbjct: 61 KKRILKSPLFIIFHAKEGESPVDKALELSGTDVGGWNVVVKSLPGQQMYRDPGGVDRFKG 120
Query: 405 EFFLPQHTIMVKDFESSLPIDVIKAQVE--KYFSAKGSFVYQDVTASGAI---KTVARFY 569
E T++VK +++ + I Q+ K+FS+ G V G + ++ AR
Sbjct: 121 E-----RTLIVKVYDTPSTLSKIDLQIGLCKHFSSCGEVTGISVLVHGNLCCHESKARVD 175
Query: 570 VRGQEGVETALERSGRSVEGLYFVVTEVVPVPA--KIRPTGYCHPHNFIEDPNITEKRSQ 743
+ G+ V+ ALE SGR+ +G VV VVP PA K++PTG HP +E K+++
Sbjct: 176 IMGKGCVDKALELSGRTADGWKIVVYFVVP-PAGRKLKPTGSGHPTIGVE----RMKKAE 230
Query: 744 KKKKSKTTERNQSKKKEK 797
KKK+K ++ KKK K
Sbjct: 231 LKKKAKMEMMDKGKKKRK 248
>TAIR9_protein||AT5G03495.1 | Symbols: | nucleotide binding |
chr5:873804-875025 REVERSE
Length = 227
Score = 99 bits (246), Expect = 3e-021
Identities = 73/219 (33%), Positives = 113/219 (51%), Gaps = 16/219 (7%)
Frame = +3
Query: 36 MHQSAIKG---LELNCRDADIRKSSI--SRISVEGYDTSLRRADVDGALREHFASCGNII 200
M +SAIKG L+LN A+ RK I ++ISVEGYDT LR V L +HFASCG I
Sbjct: 1 MDESAIKGMKLLQLNEIGANSRKPRIPWTKISVEGYDTRLREYTVKLVLEKHFASCGKIT 60
Query: 201 HVYVPVPLDVDVTGVILCRYSLIYVNEEDEEKALKLGGSDMGGRILQINPYPFHENHLDD 380
H+YVP + G++ + E EEKAL L G+D GG + P + + +D
Sbjct: 61 HIYVPRDFE---RGILKSVAFMCIKGEGGEEKALLLSGTDAGGWTAIVKPALWQKEIMDP 117
Query: 381 YLAPMKEGEFFLPQHTIMVKDFESSLPIDVIKAQVEKYFSAKGSFVYQDVTASGAIKTVA 560
+L M + L H + V +++ +P I+ + ++FS+ G V SG+
Sbjct: 118 WLPGMPK----LETHRVRVTGYDTCVPKIDIQMALCEHFSSCGEVTQVVVLPSGS----G 169
Query: 561 RFYVRGQEGVETALERSGRSVEGLYFVVTEVVPVPAKIR 677
Y++G+ + AL+ +G + G+ VV V+ P ++
Sbjct: 170 SIYLQGERCEDKALQLNGCKMGGMNLVVESVLIEPEDLK 208
>TAIR9_protein||AT5G03480.1 | Symbols: | nucleic acid binding / nucleotide
binding | chr5:869208-870855 REVERSE
Length = 322
Score = 77 bits (187), Expect = 2e-014
Identities = 49/112 (43%), Positives = 69/112 (61%), Gaps = 7/112 (6%)
Frame = +3
Query: 36 MHQSAIKGLE-LNCRDADIRKSSISRISVEGYDTSLRRADVDGALREHFASCGNIIHVYV 212
M +SAIK L+ L D+D ++S+ + I VEGYDTSL+ + AL +HFASCG I +YV
Sbjct: 1 MEESAIKRLKSLELNDSD-KQSTSTAICVEGYDTSLKEYPLRLALTKHFASCGEITQIYV 59
Query: 213 PVPLDVDVTGVILCRYSLIYVNEED-EEKALKLGGSDMGGRILQINPYPFHE 365
P D IL S +++ E E+KAL+L G+D+GG + + P P HE
Sbjct: 60 P----RDFKKKILKSVSFMWIKGEGAEDKALQLSGTDVGGWTVIVKPKPKHE 107
Score = 70 bits (170), Expect = 2e-012
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 6/150 (4%)
Frame = +3
Query: 96 SSISRISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPVPLDVDVTGVILCRYSLIYV 275
S I+ ISVEGYDTSL++ ++ L +HF SCG I HVYVP + GV+ L
Sbjct: 110 SPITTISVEGYDTSLQKYLLELILEKHFDSCGEIRHVYVPTDYE---RGVLKSVAFLRIE 166
Query: 276 NEEDEEKALKLGGSDMGGRILQINPYPFHENHLDDYLAPMKEGEFFLPQHTIMVKDFESS 455
E E+KAL+L G+D+ G + + P ++ A E H V +++S
Sbjct: 167 GEGAEDKALQLSGTDVVGWTVIVKPSEIFYDNSSRAPATTPEASKI---HRFRVTGYDAS 223
Query: 456 LPIDVIKAQVEKYFSAKGSFVYQDVTASGA 545
LP I+ + K+FS+ G V +S A
Sbjct: 224 LPEIDIQMALCKHFSSCGEIWQVTVLSSTA 253
>TAIR9_protein||AT3G09160.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:2805779-2806912 REVERSE
Length = 199
Score = 68 bits (165), Expect = 7e-012
Identities = 45/111 (40%), Positives = 63/111 (56%), Gaps = 9/111 (8%)
Frame = +3
Query: 48 AIKGLELNCRDADIRKSSISRISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPVPLD 227
A KGLE+ R IR S I RISV GYD L R V+ L++ F+ CG I V++P
Sbjct: 5 ANKGLEVK-RSRKIRDSDIERISVTGYDIELPREHVESELKKLFSPCGEITDVHIP---- 59
Query: 228 VDVTGVILCRYSLIY-VNEEDEEKALKLGGSDMGGRIL--QINPYPFHENH 371
+ L ++ IY V E +KAL+L GSDMGG + + +P+P E++
Sbjct: 60 -ETRNSSLWSHAFIYFVGEGTADKALQLNGSDMGGWTVDAEADPFPKEEDN 109
>TAIR9_protein||AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1; nucleic acid
binding / nucleotide binding | chr1:18098186-18101422 FORWARD
Length = 558
Score = 62 bits (149), Expect = 5e-010
Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 7/75 (9%)
Frame = +3
Query: 108 RISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPVPLDV-DVTGVILCRYSLIYVNEE 284
+I V+G+D SL D+ LREHF+SCG I +V VP+ D + G+ +S E
Sbjct: 402 KIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFS------E 455
Query: 285 DEEKALKLGGSDMGG 329
+EKAL+L GSDMGG
Sbjct: 456 GKEKALELNGSDMGG 470
>TAIR9_protein||AT5G05430.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: stem, leaf; EXPRESSED DURING:
LP.04 four leaves visible; BEST Arabidopsis thaliana protein match is:
RNA recognition motif (RRM)-containing protein (TAIR:AT3G09160.1); Has
23 Blast hits to 21 proteins in 1 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr5:1605275-1606703 REVERSE
Length = 159
Score = 53 bits (126), Expect = 2e-007
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Frame = +3
Query: 96 SSISRISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPVPLDVDVTGVILCRYSLIYV 275
+ + RI V GYDT L D+ AL EHF+SCG I +Y +PL D T IL R+ +
Sbjct: 20 NDVGRIKVTGYDTGLPLDDLYTALAEHFSSCGEIWEIY--IPLKFDETNTILNRFWWLLP 77
Query: 276 NE--EDEEKALKLGGSDMGGRILQINPYPFHEN 368
+ + +GG ++ ++ PYP H N
Sbjct: 78 PPFLSNSSAQVNVGGWNVS---VEAYPYPAHAN 107
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,044,144,772
Number of Sequences: 33410
Number of Extensions: 19044144772
Number of Successful Extensions: 610098073
Number of sequences better than 0.0: 0
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