BLASTX 7.6.2
Query= UN38188 /QuerySize=1130
(1129 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|297834824|ref|XP_002885294.1| RNA-binding protein 47B [Arabid... 544 2e-152
gi|15230291|ref|NP_188544.1| RNA-binding protein 47B [Arabidopsi... 540 2e-151
gi|21618243|gb|AAM67293.1| nuclear acid binding protein, putativ... 540 2e-151
gi|9294614|dbj|BAB02953.1| DNA/RNA binding protein-like [Arabido... 501 1e-139
gi|15222783|ref|NP_175383.1| RNA-binding protein 47A [Arabidopsi... 474 2e-131
gi|297852632|ref|XP_002894197.1| hypothetical protein ARALYDRAFT... 474 2e-131
gi|224123466|ref|XP_002330321.1| predicted protein [Populus tric... 443 2e-122
gi|224105517|ref|XP_002313840.1| predicted protein [Populus tric... 438 8e-121
gi|255555523|ref|XP_002518798.1| nuclear acid binding protein, p... 435 9e-120
gi|10120421|gb|AAG13046.1|AC011807_5 Putative RNA binding protei... 292 1e-076
gi|297846966|ref|XP_002891364.1| ATRBP47C [Arabidopsis lyrata su... 240 4e-061
gi|15220241|ref|NP_175181.1| RNA-binding protein 47C' [Arabidops... 236 8e-060
gi|15220233|ref|NP_175180.1| RNA-binding protein 47C [Arabidopsi... 234 2e-059
gi|42571787|ref|NP_973984.1| RNA-binding protein 47C [Arabidopsi... 234 2e-059
gi|9758270|dbj|BAB08769.1| unnamed protein product [Arabidopsis ... 214 2e-053
gi|18423684|ref|NP_568815.1| RNA-binding protein 45A [Arabidopsi... 214 2e-053
gi|125558527|gb|EAZ04063.1| hypothetical protein OsI_26200 [Oryz... 213 4e-053
gi|125600441|gb|EAZ40017.1| hypothetical protein OsJ_24455 [Oryz... 213 4e-053
gi|297792959|ref|XP_002864364.1| hypothetical protein ARALYDRAFT... 213 4e-053
gi|34395215|dbj|BAC83714.1| RNA Binding Protein-like [Oryza sati... 213 5e-053
>gi|297834824|ref|XP_002885294.1| RNA-binding protein 47B [Arabidopsis lyrata
subsp. lyrata]
Length = 435
Score = 544 bits (1399), Expect = 2e-152
Identities = 274/327 (83%), Positives = 291/327 (88%), Gaps = 17/327 (5%)
Frame = -1
Query: 1030 DSMDW*SSLLDETYLHNCFSHTGEVSSVKVIRNKLTCQSEGYGFVEFLSRATAEEVLQNF 851
D + W +DETYLH+CFSHTGEVSSVKVIRNKLT QSEGYGF+EFLSRA AEEVLQN+
Sbjct: 114 DLLHW----MDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFIEFLSRAAAEEVLQNY 169
Query: 850 NGSVMPNSEQLFRLNWASFSTGEKRAVENGPELSIFVGDLSPDVTDTLLQELFVERYPSV 671
+GS+MPNS+Q FR+NWASFSTGEKRAVENGP+LSIFVGDLSPDVTD LL E F +RYPSV
Sbjct: 170 SGSLMPNSDQPFRINWASFSTGEKRAVENGPDLSIFVGDLSPDVTDALLHETFFDRYPSV 229
Query: 670 KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGVATPKRAVANQQ 491
KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGVATPKRA+ANQQ
Sbjct: 230 KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGVATPKRAIANQQ 289
Query: 490 QHHHPSQALILAGGHGANGYMAHGSQSDGESNNSTIFVGGIDPDVTEEDLRQPFSQFGEV 311
Q H SQALILAGGHGANG MAHGSQSDGES N+TIFVGGID DVT+EDLRQPFSQFGEV
Sbjct: 290 Q--HSSQALILAGGHGANGSMAHGSQSDGESTNATIFVGGIDADVTDEDLRQPFSQFGEV 347
Query: 310 VSVKIPVGKGCGFVQLANRKSADDAIQSLNGTVIGKNTVRLSWGRSPNK*WRGDS----- 146
VSVKIPVGKGCGFVQ A RKSA+DAI++LNGTVIGKNTVRLSWGRSPNK WRGDS
Sbjct: 348 VSVKIPVGKGCGFVQFAERKSAEDAIETLNGTVIGKNTVRLSWGRSPNKQWRGDSGQQWN 407
Query: 145 -----GQGYNN-GGYANHHDSNTYPAE 83
GQGYNN GGYANHHDSN Y E
Sbjct: 408 GGYSRGQGYNNGGGYANHHDSNNYHGE 434
>gi|15230291|ref|NP_188544.1| RNA-binding protein 47B [Arabidopsis thaliana]
Length = 435
Score = 540 bits (1390), Expect = 2e-151
Identities = 271/327 (82%), Positives = 291/327 (88%), Gaps = 17/327 (5%)
Frame = -1
Query: 1030 DSMDW*SSLLDETYLHNCFSHTGEVSSVKVIRNKLTCQSEGYGFVEFLSRATAEEVLQNF 851
D + W +DETYLH+CFSHTGEVSSVKVIRNKLT QSEGYGFVEFLSRA AEEVLQN+
Sbjct: 114 DLLHW----MDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 850 NGSVMPNSEQLFRLNWASFSTGEKRAVENGPELSIFVGDLSPDVTDTLLQELFVERYPSV 671
+GSVMPNS+Q FR+NWASFSTGEKRAVENGP+LS+FVGDLSPDVTD LL E F +RYPSV
Sbjct: 170 SGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSV 229
Query: 670 KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGVATPKRAVANQQ 491
KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVG+ATPKRA+ANQQ
Sbjct: 230 KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQ 289
Query: 490 QHHHPSQALILAGGHGANGYMAHGSQSDGESNNSTIFVGGIDPDVTEEDLRQPFSQFGEV 311
Q H SQA+ILAGGHG+NG M +GSQSDGES N+TIFVGGIDPDV +EDLRQPFSQFGEV
Sbjct: 290 Q--HSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEV 347
Query: 310 VSVKIPVGKGCGFVQLANRKSADDAIQSLNGTVIGKNTVRLSWGRSPNK*WRGDSGQ--- 140
VSVKIPVGKGCGFVQ A+RKSA+DAI+SLNGTVIGKNTVRLSWGRSPNK WRGDSGQ
Sbjct: 348 VSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSPNKQWRGDSGQQWN 407
Query: 139 -------GYNN-GGYANHHDSNTYPAE 83
GYNN GGYANHHDSN Y E
Sbjct: 408 GGYSRGHGYNNGGGYANHHDSNNYHGE 434
>gi|21618243|gb|AAM67293.1| nuclear acid binding protein, putative [Arabidopsis
thaliana]
Length = 392
Score = 540 bits (1390), Expect = 2e-151
Identities = 271/327 (82%), Positives = 291/327 (88%), Gaps = 17/327 (5%)
Frame = -1
Query: 1030 DSMDW*SSLLDETYLHNCFSHTGEVSSVKVIRNKLTCQSEGYGFVEFLSRATAEEVLQNF 851
D + W +DETYLH+CFSHTGEVSSVKVIRNKLT QSEGYGFVEFLSRA AEEVLQN+
Sbjct: 71 DLLHW----MDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 126
Query: 850 NGSVMPNSEQLFRLNWASFSTGEKRAVENGPELSIFVGDLSPDVTDTLLQELFVERYPSV 671
+GSVMPNS+Q FR+NWASFSTGEKRAVENGP+LS+FVGDLSPDVTD LL E F +RYPSV
Sbjct: 127 SGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSV 186
Query: 670 KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGVATPKRAVANQQ 491
KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVG+ATPKRA+ANQQ
Sbjct: 187 KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQ 246
Query: 490 QHHHPSQALILAGGHGANGYMAHGSQSDGESNNSTIFVGGIDPDVTEEDLRQPFSQFGEV 311
Q H SQA+ILAGGHG+NG M +GSQSDGES N+TIFVGGIDPDV +EDLRQPFSQFGEV
Sbjct: 247 Q--HSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEV 304
Query: 310 VSVKIPVGKGCGFVQLANRKSADDAIQSLNGTVIGKNTVRLSWGRSPNK*WRGDSGQ--- 140
VSVKIPVGKGCGFVQ A+RKSA+DAI+SLNGTVIGKNTVRLSWGRSPNK WRGDSGQ
Sbjct: 305 VSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSPNKQWRGDSGQQWN 364
Query: 139 -------GYNN-GGYANHHDSNTYPAE 83
GYNN GGYANHHDSN Y E
Sbjct: 365 GGYSRGHGYNNGGGYANHHDSNNYHGE 391
>gi|9294614|dbj|BAB02953.1| DNA/RNA binding protein-like [Arabidopsis thaliana]
Length = 489
Score = 501 bits (1288), Expect = 1e-139
Identities = 248/289 (85%), Positives = 268/289 (92%), Gaps = 6/289 (2%)
Frame = -1
Query: 1030 DSMDW*SSLLDETYLHNCFSHTGEVSSVKVIRNKLTCQSEGYGFVEFLSRATAEEVLQNF 851
D + W +DETYLH+CFSHTGEVSSVKVIRNKLT QSEGYGFVEFLSRA AEEVLQN+
Sbjct: 114 DLLHW----MDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 850 NGSVMPNSEQLFRLNWASFSTGEKRAVENGPELSIFVGDLSPDVTDTLLQELFVERYPSV 671
+GSVMPNS+Q FR+NWASFSTGEKRAVENGP+LS+FVGDLSPDVTD LL E F +RYPSV
Sbjct: 170 SGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSV 229
Query: 670 KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGVATPKRAVANQQ 491
KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVG+ATPKRA+ANQQ
Sbjct: 230 KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQ 289
Query: 490 QHHHPSQALILAGGHGANGYMAHGSQSDGESNNSTIFVGGIDPDVTEEDLRQPFSQFGEV 311
Q H SQA+ILAGGHG+NG M +GSQSDGES N+TIFVGGIDPDV +EDLRQPFSQFGEV
Sbjct: 290 Q--HSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEV 347
Query: 310 VSVKIPVGKGCGFVQLANRKSADDAIQSLNGTVIGKNTVRLSWGRSPNK 164
VSVKIPVGKGCGFVQ A+RKSA+DAI+SLNGTVIGKNTVRLSWGRSPNK
Sbjct: 348 VSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSPNK 396
>gi|15222783|ref|NP_175383.1| RNA-binding protein 47A [Arabidopsis thaliana]
Length = 445
Score = 474 bits (1218), Expect = 2e-131
Identities = 247/323 (76%), Positives = 267/323 (82%), Gaps = 23/323 (7%)
Frame = -1
Query: 1030 DSMDW*SSLLDETYLHNCFSHTGEVSSVKVIRNKLTCQSEGYGFVEFLSRATAEEVLQNF 851
D + W +DETYLH CFSHT EVSSVKVIRNK TCQSEGYGFVEFLSR+ AEE LQ+F
Sbjct: 125 DLLHW----MDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 850 NGSVMPNSEQLFRLNWASFSTGEKRAVENGPELSIFVGDLSPDVTDTLLQELFVERYPSV 671
+G MPN+EQ FRLNWASFSTGEKRA ENGP+LSIFVGDL+PDV+D +L E F RYPSV
Sbjct: 181 SGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSV 240
Query: 670 KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGVATPKRAVANQQ 491
K AKVVIDSNTGRSKGYGFVRFGDENERSRA+TEMNGA+CS+RQMRVG+ATPKRA A Q
Sbjct: 241 KGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQ 300
Query: 490 QHHHPSQALILAGGHGANGYMAHGSQSDGESNNSTIFVGGIDPDVTEEDLRQPFSQFGEV 311
Q + SQAL LAGGHG N GS SDGESNNSTIFVGG+D DVTEEDL QPFS FGEV
Sbjct: 301 Q--NGSQALTLAGGHGGN-----GSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEV 353
Query: 310 VSVKIPVGKGCGFVQLANRKSADDAIQSLNGTVIGKNTVRLSWGRSPNK*WRGDS----- 146
VSVKIPVGKGCGFVQ ANR+SA++AI +LNGTVIGKNTVRLSWGRSPNK WR DS
Sbjct: 354 VSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSPNKQWRSDSGNQWN 413
Query: 145 -----GQGYNNGGYANHHDSNTY 92
GQGYNN GYAN DSN Y
Sbjct: 414 GGYSRGQGYNN-GYAN-QDSNMY 434
>gi|297852632|ref|XP_002894197.1| hypothetical protein ARALYDRAFT_474095
[Arabidopsis lyrata subsp. lyrata]
Length = 450
Score = 474 bits (1218), Expect = 2e-131
Identities = 247/323 (76%), Positives = 268/323 (82%), Gaps = 23/323 (7%)
Frame = -1
Query: 1030 DSMDW*SSLLDETYLHNCFSHTGEVSSVKVIRNKLTCQSEGYGFVEFLSRATAEEVLQNF 851
D + W +DETYLH CFSHT EVSSVKVIRNK TCQSEGYGFVEFLSR+ AEE LQ+F
Sbjct: 130 DLLHW----MDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 185
Query: 850 NGSVMPNSEQLFRLNWASFSTGEKRAVENGPELSIFVGDLSPDVTDTLLQELFVERYPSV 671
+G MPN+EQ FRLNWASFSTGEKRA ENGP+LSIFVGDL+PDV+D +L E F RYPSV
Sbjct: 186 SGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSV 245
Query: 670 KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGVATPKRAVANQQ 491
K AKVVIDSNTGRSKGYGFVRFGDENERSRA+TEMNGA+CS+RQMRVG+ATPKRA A Q
Sbjct: 246 KGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQ 305
Query: 490 QHHHPSQALILAGGHGANGYMAHGSQSDGESNNSTIFVGGIDPDVTEEDLRQPFSQFGEV 311
Q + SQAL LAGGHG N GS SDGESNNSTIFVGG+D DVTEEDL QPFSQFGEV
Sbjct: 306 Q--NGSQALTLAGGHGGN-----GSLSDGESNNSTIFVGGLDADVTEEDLMQPFSQFGEV 358
Query: 310 VSVKIPVGKGCGFVQLANRKSADDAIQSLNGTVIGKNTVRLSWGRSPNK*WRGDS----- 146
VSVKIPVGKGCGFVQ ANR+SA++AI +LNGTVIGKNTVRLSWGRSPNK WR D+
Sbjct: 359 VSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSPNKQWRSDTGNQWN 418
Query: 145 -----GQGYNNGGYANHHDSNTY 92
GQGYNN GYAN DSN Y
Sbjct: 419 GGYSRGQGYNN-GYAN-QDSNMY 439
>gi|224123466|ref|XP_002330321.1| predicted protein [Populus trichocarpa]
Length = 397
Score = 443 bits (1139), Expect = 2e-122
Identities = 226/313 (72%), Positives = 263/313 (84%), Gaps = 14/313 (4%)
Frame = -1
Query: 1030 DSMDW*SSLLDETYLHNCFSHTGEVSSVKVIRNKLTCQSEGYGFVEFLSRATAEEVLQNF 851
D + W +DE YLHNCFSHTGEVSSVK+IRNK T Q EGYGFVEF SRA AE+VLQ++
Sbjct: 71 DLLHW----MDEAYLHNCFSHTGEVSSVKIIRNKQTGQLEGYGFVEFYSRAAAEKVLQSY 126
Query: 850 NGSVMPNSEQLFRLNWASFSTGEKRAVENGPELSIFVGDLSPDVTDTLLQELFVERYPSV 671
+GS+MPN+EQ FRLNWASF+ GE+RA + G +LSIFVGDL+ DVTD++LQE F +YPSV
Sbjct: 127 SGSMMPNTEQPFRLNWASFA-GERRA-DPGSDLSIFVGDLAADVTDSMLQETFAGKYPSV 184
Query: 670 KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGVATPKRAVANQQ 491
K AKVVIDSNTGRSKGYGFVRFGDENE++RA+ EMNGA+CS+R MR+GVATPK+ A QQ
Sbjct: 185 KGAKVVIDSNTGRSKGYGFVRFGDENEKTRAMMEMNGAFCSSRPMRIGVATPKKPSAYQQ 244
Query: 490 QHHHPSQALILAGGHGANGYMAHGSQSDGESNNSTIFVGGIDPDVTEEDLRQPFSQFGEV 311
Q + SQAL+LAGGH +NG MA GSQSDG+SNN+TIFVGGID DVT+EDLRQPFSQFGEV
Sbjct: 245 Q--YSSQALVLAGGHASNGAMAQGSQSDGDSNNTTIFVGGIDSDVTDEDLRQPFSQFGEV 302
Query: 310 VSVKIPVGKGCGFVQLANRKSADDAIQSLNGTVIGKNTVRLSWGRSP-NK*WRGDSGQGY 134
VSVKIPVGKGC FVQ ANRK+A+DA+QSLNGT IGK TVRLSWGR+P NK WRGD G +
Sbjct: 303 VSVKIPVGKGCAFVQFANRKNAEDALQSLNGTTIGKQTVRLSWGRTPANKQWRGDHGNQW 362
Query: 133 NNG-----GYANH 110
+ G GYA +
Sbjct: 363 HGGYFGGQGYAGY 375
>gi|224105517|ref|XP_002313840.1| predicted protein [Populus trichocarpa]
Length = 412
Score = 438 bits (1126), Expect = 8e-121
Identities = 225/316 (71%), Positives = 259/316 (81%), Gaps = 19/316 (6%)
Frame = -1
Query: 1030 DSMDW*SSLLDETYLHNCFSHTGEVSSVKVIRNKLTCQSEGYGFVEFLSRATAEEVLQNF 851
D + W +DETYLHNCFSHTGEVSSVK+IRNK T Q EGYGFVEF S A AE+VLQ++
Sbjct: 86 DLLHW----MDETYLHNCFSHTGEVSSVKIIRNKQTGQLEGYGFVEFYSHAAAEKVLQSY 141
Query: 850 NGSVMPNSEQLFRLNWASFSTGEKRAVENGPELSIFVGDLSPDVTDTLLQELFVERYPSV 671
+GS+MPN++Q FRLNWASF+ GE+RA + G +LSIFVGDL+ DVTD +LQE F +Y SV
Sbjct: 142 SGSMMPNTDQPFRLNWASFA-GERRA-DAGSDLSIFVGDLAADVTDAMLQETFATKYASV 199
Query: 670 KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGVATPKRAVANQQ 491
K AKVV DSNTGRSKGYGFVRFGDENE++RA+TEMNGAYCS+R MR+GVATPK+ A QQ
Sbjct: 200 KGAKVVADSNTGRSKGYGFVRFGDENEKTRAITEMNGAYCSSRPMRIGVATPKKPSAYQQ 259
Query: 490 QHHHPSQALILAGGHGANGYMAHGSQSDGESNNSTIFVGGIDPDVTEEDLRQPFSQFGEV 311
Q + SQAL+LAGGH +NG MA GSQSDG+SNN+TIFVGGID DVT+EDLRQPFSQFGEV
Sbjct: 260 Q--YSSQALVLAGGHASNGTMAQGSQSDGDSNNTTIFVGGIDSDVTDEDLRQPFSQFGEV 317
Query: 310 VSVKIPVGKGCGFVQLANRKSADDAIQSLNGTVIGKNTVRLSWGRSP-NK*WRGD----- 149
VSVK+P GKGC FVQ ANRK+A+DA+QSLNGT IGK TVRLSWGR+P NK WRGD
Sbjct: 318 VSVKMPTGKGCAFVQFANRKNAEDALQSLNGTTIGKQTVRLSWGRTPANKQWRGDHGNQW 377
Query: 148 -----SGQGYNNGGYA 116
GQGY GYA
Sbjct: 378 HGAYFGGQGYAGYGYA 393
>gi|255555523|ref|XP_002518798.1| nuclear acid binding protein, putative
[Ricinus communis]
Length = 438
Score = 435 bits (1117), Expect = 9e-120
Identities = 220/296 (74%), Positives = 251/296 (84%), Gaps = 6/296 (2%)
Frame = -1
Query: 1003 LDETYLHNCFSHTGEVSSVKVIRNKLTCQSEGYGFVEFLSRATAEEVLQNFNGSVMPNSE 824
+DETYLH+CFSHTGEV+SVKVIRNK T Q EGYGF+EF S ATAE+VLQN+NGS+MPN++
Sbjct: 117 MDETYLHSCFSHTGEVTSVKVIRNKQTGQPEGYGFIEFYSHATAEKVLQNYNGSMMPNAD 176
Query: 823 QLFRLNWASFSTGEKRAVENGPELSIFVGDLSPDVTDTLLQELFVERYPSVKSAKVVIDS 644
Q FRLNWASF+ GE+R E G +LSIFVGDL+ DVTD +LQE F +Y SVK AKVV D
Sbjct: 177 QPFRLNWASFA-GERR-TETGSDLSIFVGDLAADVTDAMLQETFSSKYLSVKGAKVVTDL 234
Query: 643 NTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGVATPKRAVANQQQHHHPSQAL 464
NTGRSKGYGFVRFGDENERSRA+ EMNG YCS+R MR+GVATPK++ A QQQ + SQAL
Sbjct: 235 NTGRSKGYGFVRFGDENERSRAMMEMNGVYCSSRPMRIGVATPKKSPAYQQQ--YSSQAL 292
Query: 463 ILAGGHGANGYMAHGSQSDGESNNSTIFVGGIDPDVTEEDLRQPFSQFGEVVSVKIPVGK 284
+LAGGH NG MA GSQSDG+SNN+TIFVGGID D+++EDLRQPFSQFGEVVSVKIP GK
Sbjct: 293 VLAGGHAPNGSMAQGSQSDGDSNNTTIFVGGIDSDISDEDLRQPFSQFGEVVSVKIPAGK 352
Query: 283 GCGFVQLANRKSADDAIQSLNGTVIGKNTVRLSWGRSP-NK*WRGDSGQGYNNGGY 119
GCGFVQ A+RKSA+DA+QSLNGT IGK TVRLSWGRSP NK WRGD + NG Y
Sbjct: 353 GCGFVQFADRKSAEDALQSLNGTTIGKQTVRLSWGRSPANKQWRGDHNNQW-NGAY 407
>gi|10120421|gb|AAG13046.1|AC011807_5 Putative RNA binding protein [Arabidopsis
thaliana]
Length = 468
Score = 292 bits (745), Expect = 1e-076
Identities = 147/190 (77%), Positives = 162/190 (85%), Gaps = 6/190 (3%)
Frame = -1
Query: 1030 DSMDW*SSLLDETYLHNCFSHTGEVSSVKVIRNKLTCQSEGYGFVEFLSRATAEEVLQNF 851
D + W +DETYLH CFSHT EVSSVKVIRNK TCQSEGYGFVEFLSR+ AEE LQ+F
Sbjct: 125 DLLHW----MDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 850 NGSVMPNSEQLFRLNWASFSTGEKRAVENGPELSIFVGDLSPDVTDTLLQELFVERYPSV 671
+G MPN+EQ FRLNWASFSTGEKRA ENGP+LSIFVGDL+PDV+D +L E F RYPSV
Sbjct: 181 SGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSV 240
Query: 670 KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGVATPKRAVANQQ 491
K AKVVIDSNTGRSKGYGFVRFGDENERSRA+TEMNGA+CS+RQMRVG+ATPKRA A Q
Sbjct: 241 KGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQ 300
Query: 490 QHHHPSQALI 461
Q + SQ LI
Sbjct: 301 Q--NGSQGLI 308
>gi|297846966|ref|XP_002891364.1| ATRBP47C [Arabidopsis lyrata subsp. lyrata]
Length = 443
Score = 240 bits (611), Expect = 4e-061
Identities = 126/193 (65%), Positives = 150/193 (77%), Gaps = 4/193 (2%)
Frame = -1
Query: 1003 LDETYLHNCF-SHTGEVS--SVKVIRNKLTCQSEGYGFVEFLSRATAEEVLQNFNGSVMP 833
+DETYL++ F S GE+ SVKVIRNK SEGYGFVEF S A++VLQ FNG+ MP
Sbjct: 119 MDETYLNSSFASADGEIQIVSVKVIRNKHNGLSEGYGFVEFDSHDVADKVLQEFNGTTMP 178
Query: 832 NSEQLFRLNWASFSTGEKRAVENGPELSIFVGDLSPDVTDTLLQELFVERYPSVKSAKVV 653
++EQ FRLNWASFSTGEKR NGP+LSIFVGDL+PDV+DTLL E F E+YPSVK+AKVV
Sbjct: 179 DTEQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDTLLHETFSEKYPSVKAAKVV 238
Query: 652 IDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGVATPKRAVANQQQ-HHHP 476
ID+NTGRSKGYGFVRFGDENER++A+TEMNG CS+R MR+G ATP++ QQQ + P
Sbjct: 239 IDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTTGYQQQGGYMP 298
Query: 475 SQALILAGGHGAN 437
+ AL G N
Sbjct: 299 NGALTRPEGDTLN 311
>gi|15220241|ref|NP_175181.1| RNA-binding protein 47C' [Arabidopsis thaliana]
Length = 434
Score = 236 bits (600), Expect = 8e-060
Identities = 122/201 (60%), Positives = 150/201 (74%), Gaps = 7/201 (3%)
Frame = -1
Query: 1030 DSMDW*SSLLDETYLHNCF--SHTGEVSSVKVIRNKLTCQSEGYGFVEFLSRATAEEVLQ 857
D +W +DE YL++ F + E+ S+KVIRNK SEGYGFVEF S A++VLQ
Sbjct: 109 DLQNW----MDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 856 NFNGSVMPNSEQLFRLNWASFSTGEKRAVENGPELSIFVGDLSPDVTDTLLQELFVERYP 677
FNG+ MPN++Q FRLNWASFSTGEKR NGP+LSIFVGDL+PDV+D LL E F E+YP
Sbjct: 165 EFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYP 224
Query: 676 SVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGVATPKRAVAN 497
SVK+AKVV+D+NTGRSKGYGFVRFGDENER++A+TEMNG CS+R MR+G ATP++
Sbjct: 225 SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGY 284
Query: 496 QQQ-HHHPSQALILAGGHGAN 437
QQQ + PS A + G N
Sbjct: 285 QQQGGYMPSGAFTRSEGDTIN 305
>gi|15220233|ref|NP_175180.1| RNA-binding protein 47C [Arabidopsis thaliana]
Length = 432
Score = 234 bits (596), Expect = 2e-059
Identities = 116/174 (66%), Positives = 140/174 (80%), Gaps = 2/174 (1%)
Frame = -1
Query: 1003 LDETYLHNCFS--HTGEVSSVKVIRNKLTCQSEGYGFVEFLSRATAEEVLQNFNGSVMPN 830
+DE YL++ F+ E+ SVKVIRNK SEGYGFVEF S A++VL+ FNG+ MPN
Sbjct: 112 MDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPN 171
Query: 829 SEQLFRLNWASFSTGEKRAVENGPELSIFVGDLSPDVTDTLLQELFVERYPSVKSAKVVI 650
++Q FRLNWASFSTGEKR NGP+LSIFVGDLSPDV+D LL E F E+YPSVK+AKVV+
Sbjct: 172 TDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVL 231
Query: 649 DSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGVATPKRAVANQQQ 488
D+NTGRSKGYGFVRFGDENER++A+TEMNG CS+R MR+G ATP++ QQQ
Sbjct: 232 DANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQ 285
>gi|42571787|ref|NP_973984.1| RNA-binding protein 47C [Arabidopsis thaliana]
Length = 310
Score = 234 bits (596), Expect = 2e-059
Identities = 116/174 (66%), Positives = 140/174 (80%), Gaps = 2/174 (1%)
Frame = -1
Query: 1003 LDETYLHNCFS--HTGEVSSVKVIRNKLTCQSEGYGFVEFLSRATAEEVLQNFNGSVMPN 830
+DE YL++ F+ E+ SVKVIRNK SEGYGFVEF S A++VL+ FNG+ MPN
Sbjct: 112 MDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPN 171
Query: 829 SEQLFRLNWASFSTGEKRAVENGPELSIFVGDLSPDVTDTLLQELFVERYPSVKSAKVVI 650
++Q FRLNWASFSTGEKR NGP+LSIFVGDLSPDV+D LL E F E+YPSVK+AKVV+
Sbjct: 172 TDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVL 231
Query: 649 DSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGVATPKRAVANQQQ 488
D+NTGRSKGYGFVRFGDENER++A+TEMNG CS+R MR+G ATP++ QQQ
Sbjct: 232 DANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQ 285
>gi|9758270|dbj|BAB08769.1| unnamed protein product [Arabidopsis thaliana]
Length = 390
Score = 214 bits (544), Expect = 2e-053
Identities = 104/178 (58%), Positives = 130/178 (73%)
Frame = -1
Query: 1003 LDETYLHNCFSHTGEVSSVKVIRNKLTCQSEGYGFVEFLSRATAEEVLQNFNGSVMPNSE 824
+DE Y+ + F+ +GE +S KVIRNKLT QSEGYGF+EF+S + AE VLQ +NG+ MP++E
Sbjct: 71 MDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTE 130
Query: 823 QLFRLNWASFSTGEKRAVENGPELSIFVGDLSPDVTDTLLQELFVERYPSVKSAKVVIDS 644
Q FRLNWA GEKR GP+ +IFVGDL+P+VTD +L + F Y SVK AKVV+D
Sbjct: 131 QTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDR 190
Query: 643 NTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGVATPKRAVANQQQHHHPSQ 470
TGRSKGYGFVRF DENE+ RA+TEMNG YCS R MR+G A K A+ Q + +Q
Sbjct: 191 TTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQ 248
>gi|18423684|ref|NP_568815.1| RNA-binding protein 45A [Arabidopsis thaliana]
Length = 387
Score = 214 bits (544), Expect = 2e-053
Identities = 104/178 (58%), Positives = 130/178 (73%)
Frame = -1
Query: 1003 LDETYLHNCFSHTGEVSSVKVIRNKLTCQSEGYGFVEFLSRATAEEVLQNFNGSVMPNSE 824
+DE Y+ + F+ +GE +S KVIRNKLT QSEGYGF+EF+S + AE VLQ +NG+ MP++E
Sbjct: 71 MDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTE 130
Query: 823 QLFRLNWASFSTGEKRAVENGPELSIFVGDLSPDVTDTLLQELFVERYPSVKSAKVVIDS 644
Q FRLNWA GEKR GP+ +IFVGDL+P+VTD +L + F Y SVK AKVV+D
Sbjct: 131 QTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDR 190
Query: 643 NTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGVATPKRAVANQQQHHHPSQ 470
TGRSKGYGFVRF DENE+ RA+TEMNG YCS R MR+G A K A+ Q + +Q
Sbjct: 191 TTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQ 248
>gi|125558527|gb|EAZ04063.1| hypothetical protein OsI_26200 [Oryza sativa Indica
Group]
Length = 323
Score = 213 bits (542), Expect = 4e-053
Identities = 108/182 (59%), Positives = 136/182 (74%), Gaps = 1/182 (0%)
Frame = -1
Query: 1003 LDETYLHNCFSHTG-EVSSVKVIRNKLTCQSEGYGFVEFLSRATAEEVLQNFNGSVMPNS 827
+DE+YL N F+ G +V+SVKVIRNK + SEGYGF+EF S A AE L NFNG +M N
Sbjct: 139 MDESYLSNAFAPMGQQVTSVKVIRNKQSGHSEGYGFIEFQSHAAAEYALANFNGRMMLNV 198
Query: 826 EQLFRLNWASFSTGEKRAVENGPELSIFVGDLSPDVTDTLLQELFVERYPSVKSAKVVID 647
+QLF+LNWAS GE+RA ++GPE +IFVGDL+ DVTD++L+E F YPSV+ AKVV D
Sbjct: 199 DQLFKLNWASSGAGERRAADDGPEHTIFVGDLASDVTDSMLEEAFKTSYPSVRGAKVVFD 258
Query: 646 SNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGVATPKRAVANQQQHHHPSQA 467
TGRSKGYGFVRFGDENE++RA+TEMNGA S RQMR+G A K+ + QQ + +
Sbjct: 259 KVTGRSKGYGFVRFGDENEQTRAMTEMNGATLSTRQMRLGPAANKKNMGTQQTYSTNGRH 318
Query: 466 LI 461
L+
Sbjct: 319 LV 320
>gi|125600441|gb|EAZ40017.1| hypothetical protein OsJ_24455 [Oryza sativa
Japonica Group]
Length = 323
Score = 213 bits (542), Expect = 4e-053
Identities = 108/182 (59%), Positives = 136/182 (74%), Gaps = 1/182 (0%)
Frame = -1
Query: 1003 LDETYLHNCFSHTG-EVSSVKVIRNKLTCQSEGYGFVEFLSRATAEEVLQNFNGSVMPNS 827
+DE+YL N F+ G +V+SVKVIRNK + SEGYGF+EF S A AE L NFNG +M N
Sbjct: 139 MDESYLSNAFAPMGQQVTSVKVIRNKQSGHSEGYGFIEFQSHAAAEYALANFNGRMMLNV 198
Query: 826 EQLFRLNWASFSTGEKRAVENGPELSIFVGDLSPDVTDTLLQELFVERYPSVKSAKVVID 647
+QLF+LNWAS GE+RA ++GPE +IFVGDL+ DVTD++L+E F YPSV+ AKVV D
Sbjct: 199 DQLFKLNWASSGAGERRAADDGPEHTIFVGDLASDVTDSMLEEAFKTSYPSVRGAKVVFD 258
Query: 646 SNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGVATPKRAVANQQQHHHPSQA 467
TGRSKGYGFVRFGDENE++RA+TEMNGA S RQMR+G A K+ + QQ + +
Sbjct: 259 KVTGRSKGYGFVRFGDENEQTRAMTEMNGATLSTRQMRLGPAANKKNMGTQQTYSTNGRH 318
Query: 466 LI 461
L+
Sbjct: 319 LV 320
>gi|297792959|ref|XP_002864364.1| hypothetical protein ARALYDRAFT_495572
[Arabidopsis lyrata subsp. lyrata]
Length = 398
Score = 213 bits (542), Expect = 4e-053
Identities = 103/178 (57%), Positives = 129/178 (72%)
Frame = -1
Query: 1003 LDETYLHNCFSHTGEVSSVKVIRNKLTCQSEGYGFVEFLSRATAEEVLQNFNGSVMPNSE 824
+DE Y+ + F+ +GE S KVIRNKLT QSEGYGF+EF++ + AE VLQ +NG+ MP++E
Sbjct: 75 MDENYIMSVFNQSGEAQSAKVIRNKLTGQSEGYGFIEFINHSVAERVLQTYNGAQMPSTE 134
Query: 823 QLFRLNWASFSTGEKRAVENGPELSIFVGDLSPDVTDTLLQELFVERYPSVKSAKVVIDS 644
Q FRLNWA GEKR GP+ +IFVGDL+P+VTD +L + F Y SVK AKVV+D
Sbjct: 135 QTFRLNWAQAGAGEKRHQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVVDR 194
Query: 643 NTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGVATPKRAVANQQQHHHPSQ 470
TGRSKGYGFVRF DENE+ RA+TEMNG YCS R MR+G A K A+ Q + +Q
Sbjct: 195 TTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQ 252
>gi|34395215|dbj|BAC83714.1| RNA Binding Protein-like [Oryza sativa Japonica
Group]
Length = 206
Score = 213 bits (541), Expect = 5e-053
Identities = 107/174 (61%), Positives = 133/174 (76%), Gaps = 1/174 (0%)
Frame = -1
Query: 1003 LDETYLHNCFSHTG-EVSSVKVIRNKLTCQSEGYGFVEFLSRATAEEVLQNFNGSVMPNS 827
+DE+YL N F+ G +V+SVKVIRNK + SEGYGF+EF S A AE L NFNG +M N
Sbjct: 24 MDESYLSNAFAPMGQQVTSVKVIRNKQSGHSEGYGFIEFQSHAAAEYALANFNGRMMLNV 83
Query: 826 EQLFRLNWASFSTGEKRAVENGPELSIFVGDLSPDVTDTLLQELFVERYPSVKSAKVVID 647
+QLF+LNWAS GE+RA ++GPE +IFVGDL+ DVTD++L+E F YPSV+ AKVV D
Sbjct: 84 DQLFKLNWASSGAGERRAADDGPEHTIFVGDLASDVTDSMLEEAFKTSYPSVRGAKVVFD 143
Query: 646 SNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGVATPKRAVANQQQH 485
TGRSKGYGFVRFGDENE++RA+TEMNGA S RQMR+G A K+ + QQ +
Sbjct: 144 KVTGRSKGYGFVRFGDENEQTRAMTEMNGATLSTRQMRLGPAANKKNMGTQQTY 197
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,281,875,611,404
Number of Sequences: 15229318
Number of Extensions: 4281875611404
Number of Successful Extensions: 1013544274
Number of sequences better than 0.0: 0
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