BLASTX 7.6.2
Query= UN38192 /QuerySize=968
(967 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G67230.1 | Symbols: LINC1 | LINC1 (LITTLE NUCL... 255 3e-068
TAIR9_protein||AT1G13220.1 | Symbols: LINC2 | LINC2 (LITTLE NUCL... 146 2e-035
TAIR9_protein||AT1G13220.2 | Symbols: LINC2 | LINC2 (LITTLE NUCL... 146 2e-035
TAIR9_protein||AT1G68790.1 | Symbols: LINC3 | LINC3 (LITTLE NUCL... 124 1e-028
TAIR9_protein||AT5G65770.1 | Symbols: LINC4 | LINC4 (LITTLE NUCL... 101 1e-021
TAIR9_protein||AT5G65770.2 | Symbols: LINC4 | LINC4 (LITTLE NUCL... 101 1e-021
>TAIR9_protein||AT1G67230.1 | Symbols: LINC1 | LINC1 (LITTLE NUCLEI1) |
chr1:25151561-25156032 REVERSE
Length = 1133
Score = 255 bits (651), Expect = 3e-068
Identities = 134/149 (89%), Positives = 144/149 (96%)
Frame = -3
Query: 449 GLRKALGIEKQCALDLEKALWELRSENAEIKFTADSKLEEANALVRSVEEKSLEVEAKLR 270
GLRKALGIEKQCALDLEKAL ELR+ENAEIKFTADSKL EANALVRSVEEKSLEVEAKLR
Sbjct: 118 GLRKALGIEKQCALDLEKALKELRAENAEIKFTADSKLTEANALVRSVEEKSLEVEAKLR 177
Query: 269 AVDARLAEVSRKSSEVERRSKDVEARESSLQRERFSHITEREAEEANLTNQREDLREWER 90
AVDA+LAEVSRKSS+VER++K+VEARESSLQRERFS+I EREA+EA L+ QREDLREWER
Sbjct: 178 AVDAKLAEVSRKSSDVERKAKEVEARESSLQRERFSYIAEREADEATLSKQREDLREWER 237
Query: 89 KLQEGEERVAKSQMIVKQREDRSNESDKI 3
KLQEGEERVAKSQMIVKQREDR+NESDKI
Sbjct: 238 KLQEGEERVAKSQMIVKQREDRANESDKI 266
Score = 136 bits (342), Expect = 2e-032
Identities = 72/115 (62%), Positives = 87/115 (75%), Gaps = 2/115 (1%)
Frame = -2
Query: 780 FERMSTPLKVWQRWST-PTKATNPDSNGKVSGMGSEIQYDDDPRRLPDKVSELEKELFEY 604
++R STP K S + T D VSG SEIQ+ DDPR LP+K+SELEKELFEY
Sbjct: 8 WQRWSTPTKATNPDSNGSSHGTGLDMVTPVSGRVSEIQF-DDPRILPEKISELEKELFEY 66
Query: 603 QHNMGLLLLEKKEWSSKFEELQLEFEEANQCLRRERNAHMIAIADVEKREEGFEE 439
QH+MGLLL+EKKEWSS++E LQ FEE N+CL++ERNAH+IAIADVEKREEG +
Sbjct: 67 QHSMGLLLIEKKEWSSQYEALQQAFEEVNECLKQERNAHLIAIADVEKREEGLRK 121
Score = 60 bits (145), Expect = 1e-009
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = -2
Query: 771 MSTPLKVWQRWSTPTKATNPDSNGKVSGMGSEI 673
MSTPLKVWQRWSTPTKATNPDSNG G G ++
Sbjct: 1 MSTPLKVWQRWSTPTKATNPDSNGSSHGTGLDM 33
>TAIR9_protein||AT1G13220.1 | Symbols: LINC2 | LINC2 (LITTLE NUCLEI2) |
chr1:4515660-4517415 FORWARD
Length = 392
Score = 146 bits (368), Expect = 2e-035
Identities = 75/147 (51%), Positives = 107/147 (72%)
Frame = -3
Query: 446 LRKALGIEKQCALDLEKALWELRSENAEIKFTADSKLEEANALVRSVEEKSLEVEAKLRA 267
LRKALG+EKQC +LEKAL E++ EN++I+ ++++KL EANALV SV +S +VE K+ +
Sbjct: 165 LRKALGLEKQCVQELEKALREIQEENSKIRLSSEAKLVEANALVASVNGRSSDVENKIYS 224
Query: 266 VDARLAEVSRKSSEVERRSKDVEARESSLQRERFSHITEREAEEANLTNQREDLREWERK 87
+++LAE +RKSSE++ R K+VE RES LQ+ER S ERE+ E QRE L EWE+K
Sbjct: 225 AESKLAEATRKSSELKLRLKEVETRESVLQQERLSFTKERESYEGTFQKQREYLNEWEKK 284
Query: 86 LQEGEERVAKSQMIVKQREDRSNESDK 6
LQ EE + + + + QRE++ NE +K
Sbjct: 285 LQGKEESITEQKRNLNQREEKVNEIEK 311
Score = 80 bits (197), Expect = 1e-015
Identities = 38/74 (51%), Positives = 53/74 (71%)
Frame = -2
Query: 660 DPRRLPDKVSELEKELFEYQHNMGLLLLEKKEWSSKFEELQLEFEEANQCLRRERNAHMI 481
D L +K+S LEKEL+ YQHNMGLLL+E KE SK E+L F+EA + L+RE+++H+
Sbjct: 94 DQEALLEKISTLEKELYGYQHNMGLLLMENKELVSKHEQLNQAFQEAQEILKREQSSHLY 153
Query: 480 AIADVEKREEGFEE 439
A+ VE+REE +
Sbjct: 154 ALTTVEQREENLRK 167
>TAIR9_protein||AT1G13220.2 | Symbols: LINC2 | LINC2 (LITTLE NUCLEI2) |
chr1:4515699-4520071 FORWARD
Length = 1129
Score = 146 bits (368), Expect = 2e-035
Identities = 75/147 (51%), Positives = 107/147 (72%)
Frame = -3
Query: 446 LRKALGIEKQCALDLEKALWELRSENAEIKFTADSKLEEANALVRSVEEKSLEVEAKLRA 267
LRKALG+EKQC +LEKAL E++ EN++I+ ++++KL EANALV SV +S +VE K+ +
Sbjct: 152 LRKALGLEKQCVQELEKALREIQEENSKIRLSSEAKLVEANALVASVNGRSSDVENKIYS 211
Query: 266 VDARLAEVSRKSSEVERRSKDVEARESSLQRERFSHITEREAEEANLTNQREDLREWERK 87
+++LAE +RKSSE++ R K+VE RES LQ+ER S ERE+ E QRE L EWE+K
Sbjct: 212 AESKLAEATRKSSELKLRLKEVETRESVLQQERLSFTKERESYEGTFQKQREYLNEWEKK 271
Query: 86 LQEGEERVAKSQMIVKQREDRSNESDK 6
LQ EE + + + + QRE++ NE +K
Sbjct: 272 LQGKEESITEQKRNLNQREEKVNEIEK 298
Score = 80 bits (197), Expect = 1e-015
Identities = 38/74 (51%), Positives = 53/74 (71%)
Frame = -2
Query: 660 DPRRLPDKVSELEKELFEYQHNMGLLLLEKKEWSSKFEELQLEFEEANQCLRRERNAHMI 481
D L +K+S LEKEL+ YQHNMGLLL+E KE SK E+L F+EA + L+RE+++H+
Sbjct: 81 DQEALLEKISTLEKELYGYQHNMGLLLMENKELVSKHEQLNQAFQEAQEILKREQSSHLY 140
Query: 480 AIADVEKREEGFEE 439
A+ VE+REE +
Sbjct: 141 ALTTVEQREENLRK 154
>TAIR9_protein||AT1G68790.1 | Symbols: LINC3 | LINC3 (LITTLE NUCLEI3) |
chr1:25834932-25839157 REVERSE
Length = 1086
Score = 124 bits (310), Expect = 1e-028
Identities = 67/147 (45%), Positives = 101/147 (68%)
Frame = -3
Query: 446 LRKALGIEKQCALDLEKALWELRSENAEIKFTADSKLEEANALVRSVEEKSLEVEAKLRA 267
LRKAL EKQ +LE L + E++ +K T+++KLEEANALV ++EK+LEV+ +
Sbjct: 130 LRKALIDEKQFVAELENDLKYWQREHSVVKSTSEAKLEEANALVIGMKEKALEVDRERAI 189
Query: 266 VDARLAEVSRKSSEVERRSKDVEARESSLQRERFSHITEREAEEANLTNQREDLREWERK 87
+ + + ++RKSSE+ER+ K+VE RE QRE S +TEREA EA QREDL+EWE+K
Sbjct: 190 AEEKFSVMNRKSSELERKLKEVETREKVHQREHLSLVTEREAHEAVFYKQREDLQEWEKK 249
Query: 86 LQEGEERVAKSQMIVKQREDRSNESDK 6
L E+R+++ + + RE+R E+++
Sbjct: 250 LTLEEDRLSEVKRSINHREERVMENER 276
Score = 80 bits (195), Expect = 2e-015
Identities = 37/78 (47%), Positives = 55/78 (70%)
Frame = -2
Query: 660 DPRRLPDKVSELEKELFEYQHNMGLLLLEKKEWSSKFEELQLEFEEANQCLRRERNAHMI 481
D L +K+ +LEKELF+YQHNMGLLL+EKK+W+S ELQ ++EA + L+RE+ ++ I
Sbjct: 59 DRDALIEKILKLEKELFDYQHNMGLLLIEKKQWTSTNNELQQAYDEAMEMLKREKTSNAI 118
Query: 480 AIADVEKREEGFEEGSRD 427
+ + +KREE + D
Sbjct: 119 TLNEADKREENLRKALID 136
>TAIR9_protein||AT5G65770.1 | Symbols: LINC4 | LINC4 (LITTLE NUCLEI4) |
chr5:26311587-26315610 FORWARD
Length = 1011
Score = 101 bits (249), Expect = 1e-021
Identities = 55/140 (39%), Positives = 84/140 (60%)
Frame = -3
Query: 446 LRKALGIEKQCALDLEKALWELRSENAEIKFTADSKLEEANALVRSVEEKSLEVEAKLRA 267
L+K +GI K+C LEK L E+R+E AE K +A S + EA+ ++ +K + EAK+RA
Sbjct: 129 LKKDVGIAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRA 188
Query: 266 VDARLAEVSRKSSEVERRSKDVEARESSLQRERFSHITEREAEEANLTNQREDLREWERK 87
+A AE +R ER+ K+VE+RE L R S +E E +E + +R+ L E +
Sbjct: 189 AEALQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKS 248
Query: 86 LQEGEERVAKSQMIVKQRED 27
LQ+ ER+ +Q+ + QRED
Sbjct: 249 LQQEHERLLDAQVSLNQRED 268
Score = 70 bits (171), Expect = 1e-012
Identities = 34/87 (39%), Positives = 59/87 (67%)
Frame = -2
Query: 699 KVSGMGSEIQYDDDPRRLPDKVSELEKELFEYQHNMGLLLLEKKEWSSKFEELQLEFEEA 520
K +G + + D L +++LE E+++YQHNMGLLLLEK E SS++EE++ +E+
Sbjct: 45 KDAGFDEQSIKNRDKAALIAYIAKLESEVYDYQHNMGLLLLEKNELSSQYEEIKASVDES 104
Query: 519 NQCLRRERNAHMIAIADVEKREEGFEE 439
+ RE++A++ A+A+ +KREE ++
Sbjct: 105 DLTHMREKSAYVSALAEAKKREESLKK 131
>TAIR9_protein||AT5G65770.2 | Symbols: LINC4 | LINC4 (LITTLE NUCLEI4) |
chr5:26311587-26315544 FORWARD
Length = 1043
Score = 101 bits (249), Expect = 1e-021
Identities = 55/140 (39%), Positives = 84/140 (60%)
Frame = -3
Query: 446 LRKALGIEKQCALDLEKALWELRSENAEIKFTADSKLEEANALVRSVEEKSLEVEAKLRA 267
L+K +GI K+C LEK L E+R+E AE K +A S + EA+ ++ +K + EAK+RA
Sbjct: 129 LKKDVGIAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRA 188
Query: 266 VDARLAEVSRKSSEVERRSKDVEARESSLQRERFSHITEREAEEANLTNQREDLREWERK 87
+A AE +R ER+ K+VE+RE L R S +E E +E + +R+ L E +
Sbjct: 189 AEALQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKS 248
Query: 86 LQEGEERVAKSQMIVKQRED 27
LQ+ ER+ +Q+ + QRED
Sbjct: 249 LQQEHERLLDAQVSLNQRED 268
Score = 70 bits (171), Expect = 1e-012
Identities = 34/87 (39%), Positives = 59/87 (67%)
Frame = -2
Query: 699 KVSGMGSEIQYDDDPRRLPDKVSELEKELFEYQHNMGLLLLEKKEWSSKFEELQLEFEEA 520
K +G + + D L +++LE E+++YQHNMGLLLLEK E SS++EE++ +E+
Sbjct: 45 KDAGFDEQSIKNRDKAALIAYIAKLESEVYDYQHNMGLLLLEKNELSSQYEEIKASVDES 104
Query: 519 NQCLRRERNAHMIAIADVEKREEGFEE 439
+ RE++A++ A+A+ +KREE ++
Sbjct: 105 DLTHMREKSAYVSALAEAKKREESLKK 131
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,221,183,508
Number of Sequences: 33410
Number of Extensions: 19221183508
Number of Successful Extensions: 610255257
Number of sequences better than 0.0: 0
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