BLASTX 7.6.2
Query= UN39246 /QuerySize=992
(991 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=S... 268 4e-071
sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=... 135 7e-031
sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic O... 135 7e-031
sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=... 132 4e-030
sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=... 83 2e-015
sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=... 80 2e-014
sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=... 80 3e-014
sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=... 79 3e-014
sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic O... 79 4e-014
sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic ... 78 8e-014
sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=... 75 5e-013
sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=... 72 4e-012
>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=Spinacia
oleracea GN=PSRP2 PE=1 SV=1
Length = 260
Score = 268 bits (685), Expect = 4e-071
Identities = 141/243 (58%), Positives = 175/243 (72%), Gaps = 10/243 (4%)
Frame = +2
Query: 104 FHSESSTSLQSQTNAFALKAKAFPSVPTAISLPRTSRTRLIPRATMETEEKPALDPNAES 283
F S++ LQS +N F LK K S + P + R + + + + E
Sbjct: 28 FSSQNLVQLQSFSNGFGLKLKTRVS-----TNPPLLKVRAVVTEETSSSSTASSSSDGEG 82
Query: 284 SRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVGDANAVI 463
+RR+Y+GNIPR + N++L +VEEHGA+E +VMYDKYSGRSRRFGF TMK+V DANAVI
Sbjct: 83 ARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVI 142
Query: 464 EKLNGTTIEGREVKVNITEKPLELSSSSSPDLSLLQSEDAAFVDSPYKVYVGNLAKSVTK 643
EKLN T I GR++KVNITEKPLE D++ Q+ED+ FV+SPYKVY+GNLAK+VT
Sbjct: 143 EKLNDTEIGGRKIKVNITEKPLE-----GMDIATTQAEDSQFVESPYKVYIGNLAKTVTN 197
Query: 644 EMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAIVAFNNFLLEGQKIRV 823
E+L+ FSEKGKVL AKV R PGTSKS GFGFV+FSS+E+VEAAI A NN +LEGQKIRV
Sbjct: 198 ELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRV 257
Query: 824 NKA 832
NKA
Sbjct: 258 NKA 260
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 135 bits (338), Expect = 7e-031
Identities = 88/246 (35%), Positives = 137/246 (55%), Gaps = 13/246 (5%)
Frame = +2
Query: 134 SQTNAFALKAKAFPSVPTAISLPRTS-RTRLIPRATM----ETEEKPALDPNAESSR--- 289
SQT + + + S+ ++S P + +R + + T+ + E+ D E R
Sbjct: 25 SQTTSLSFFSLPPSSLNLSLSSPSSCFSSRFVRKVTLPDFDQIEDVEDGDEGVEEERNFS 84
Query: 290 ---RVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVGDANAV 460
++++GN+ + + L +L E G VE V+V+YDK +GRSR FGF TM S + A
Sbjct: 85 PDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAA 144
Query: 461 IEKLNGTTIEGREVKVNITEKPLELSSSSSPDLSLLQ--SEDAAFVDSPYKVYVGNLAKS 634
++ NG ++GR ++VN P + +SS + S + S DS +VYVGNLA
Sbjct: 145 CQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWG 204
Query: 635 VTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAIVAFNNFLLEGQK 814
V ++ LE+LFSE+GKV+ AKV + +S GFGFVT+SS E+V AI + + L G+
Sbjct: 205 VDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRA 264
Query: 815 IRVNKA 832
IRV+ A
Sbjct: 265 IRVSPA 270
Score = 70 bits (171), Expect = 2e-011
Identities = 35/81 (43%), Positives = 48/81 (59%)
Frame = +2
Query: 278 ESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVGDANA 457
+SS RVY+GN+ V + L L E G V +V+YD+ SGRSR FGF T S + N
Sbjct: 191 DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNN 250
Query: 458 VIEKLNGTTIEGREVKVNITE 520
IE L+G + GR ++V+ E
Sbjct: 251 AIESLDGVDLNGRAIRVSPAE 271
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana
sylvestris PE=2 SV=1
Length = 273
Score = 135 bits (338), Expect = 7e-031
Identities = 77/187 (41%), Positives = 111/187 (59%), Gaps = 4/187 (2%)
Frame = +2
Query: 272 NAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVGDA 451
N ++++GN+P + + L +L E G VE V+V+YDK +GRSR FGF TM S +
Sbjct: 82 NFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEV 141
Query: 452 NAVIEKLNGTTIEGREVKVNITEKPLELSSSSSPDLSLLQSEDAAFVDSPYKVYVGNLAK 631
A ++ NG ++GR ++VN P + +SS S DS +VYVGNLA
Sbjct: 142 EAACQQFNGYELDGRALRVNSGPPPEKRENSSFRG----GSRGGGSFDSSNRVYVGNLAW 197
Query: 632 SVTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAIVAFNNFLLEGQ 811
V ++ LE+LFSE+GKV+ AKV + +S GFGFVT+SS E+V AI + + L G+
Sbjct: 198 GVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGR 257
Query: 812 KIRVNKA 832
IRV+ A
Sbjct: 258 AIRVSPA 264
Score = 70 bits (171), Expect = 2e-011
Identities = 35/81 (43%), Positives = 48/81 (59%)
Frame = +2
Query: 278 ESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVGDANA 457
+SS RVY+GN+ V + L L E G V +V+YD+ SGRSR FGF T S + N
Sbjct: 185 DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNN 244
Query: 458 VIEKLNGTTIEGREVKVNITE 520
IE L+G + GR ++V+ E
Sbjct: 245 AIESLDGVDLNGRAIRVSPAE 265
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
sylvestris PE=1 SV=1
Length = 324
Score = 132 bits (331), Expect = 4e-030
Identities = 71/195 (36%), Positives = 116/195 (59%), Gaps = 2/195 (1%)
Frame = +2
Query: 248 EEKPALDPNAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFA 427
E++ ++ + R+Y+GN+P ++T+ QL+++ E G V V+++YD+ + RSR F F
Sbjct: 101 EKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFV 160
Query: 428 TMKSVGDANAVIEKLNGTTIEGREVKVNITEKPLELSSSSSPDLSLLQSEDAAFVDSPYK 607
TM SV +A I +G+ + GR VKVN E P + ++S FVDSP+K
Sbjct: 161 TMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVP--RGGEREVMSAKIRSTYQGFVDSPHK 218
Query: 608 VYVGNLAKSVTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAIVAF 787
+YV NL+ ++T + L F+++ +SAKV + +S GFGF+TFSS E + +A+
Sbjct: 219 LYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTM 278
Query: 788 NNFLLEGQKIRVNKA 832
N LEG+ +R+N A
Sbjct: 279 NEVELEGRPLRLNVA 293
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis
thaliana GN=RBP31 PE=1 SV=1
Length = 329
Score = 83 bits (204), Expect = 2e-015
Identities = 38/82 (46%), Positives = 55/82 (67%)
Frame = +2
Query: 278 ESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVGDANA 457
E + RVY+GN+P V N +L +L EHG V + +V+YD+ +GRSR FGF TM V + N
Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 300
Query: 458 VIEKLNGTTIEGREVKVNITEK 523
I L+G +EGR ++VN+ E+
Sbjct: 301 AISALDGQNLEGRAIRVNVAEE 322
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
sylvestris PE=1 SV=1
Length = 315
Score = 80 bits (196), Expect = 2e-014
Identities = 38/91 (41%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Frame = +2
Query: 251 EKPALDPNA-ESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFA 427
E+P P E S R+Y+GNIP + + +L +L EHG V +V+YD+ +GRSR FGF
Sbjct: 217 ERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFV 276
Query: 428 TMKSVGDANAVIEKLNGTTIEGREVKVNITE 520
TM S + + I L+G +++GR ++VN+ E
Sbjct: 277 TMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 80 bits (195), Expect = 3e-014
Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 12/161 (7%)
Frame = +2
Query: 80 SIKP----TLFSFHSES-STSLQSQTNAFALKAKAFPSVPTAISLPRTSRTRLIPRATME 244
S+KP + FS S S + SL S + + K F S ++R L +E
Sbjct: 21 SLKPNSTLSFFSLPSSSLNLSLSSSSIGHSASIKPFES-------SFSTRVALSDFDQLE 73
Query: 245 TEEKPALDPNAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGF 424
+ + A P ++++GN+P +V + L L E G VE V+V+YDK SGRSR FGF
Sbjct: 74 DDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGF 133
Query: 425 ATMKSVGDANAVIEKLNGTTIEGREVKVNITEKPLELSSSS 547
TM + + A ++ NG I+GR ++VN P + +SS
Sbjct: 134 VTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSS 174
Score = 72 bits (176), Expect = 4e-012
Identities = 35/84 (41%), Positives = 52/84 (61%)
Frame = +2
Query: 272 NAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVGDA 451
+ +SS RVY+GN+ V + L +L E G V +V+YD+ SGRSR FGF T S +
Sbjct: 203 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEV 262
Query: 452 NAVIEKLNGTTIEGREVKVNITEK 523
N I+ LNG ++GR ++V+ E+
Sbjct: 263 NDAIDSLNGIDLDGRSIRVSAAEE 286
Score = 70 bits (170), Expect = 2e-011
Identities = 39/81 (48%), Positives = 53/81 (65%)
Frame = +2
Query: 590 VDSPYKVYVGNLAKSVTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVE 769
VDS +VYVGNL+ V L+ LFSE+G V+ AKV + +S GFGFVT+SS ++V
Sbjct: 204 VDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVN 263
Query: 770 AAIVAFNNFLLEGQKIRVNKA 832
AI + N L+G+ IRV+ A
Sbjct: 264 DAIDSLNGIDLDGRSIRVSAA 284
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia
oleracea PE=1 SV=1
Length = 233
Score = 79 bits (194), Expect = 3e-014
Identities = 41/99 (41%), Positives = 59/99 (59%), Gaps = 4/99 (4%)
Frame = +2
Query: 227 PRATMETEEKPALDPNAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGR 406
PR + E + +P S RVY+GN+P V +L +L EHG V +V+ D+ +GR
Sbjct: 133 PRGSPERAPRGDFEP----SCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGR 188
Query: 407 SRRFGFATMKSVGDANAVIEKLNGTTIEGREVKVNITEK 523
SR FGF TM S + N I L+G T++GR V+VN+ E+
Sbjct: 189 SRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEE 227
Score = 72 bits (175), Expect = 5e-012
Identities = 39/76 (51%), Positives = 49/76 (64%)
Frame = +2
Query: 605 KVYVGNLAKSVTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAIVA 784
+VYVGNL V LE LFSE GKV+SA+V T +S GFGFVT SS+ +V AI A
Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAA 209
Query: 785 FNNFLLEGQKIRVNKA 832
+ L+G+ +RVN A
Sbjct: 210 LDGQTLDGRAVRVNVA 225
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana
sylvestris PE=2 SV=1
Length = 291
Score = 79 bits (193), Expect = 4e-014
Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 5/157 (3%)
Frame = +2
Query: 80 SIKP-TLFSFHSESSTSLQSQTNAFALKAKAFPSVPTAISLPRTSRTRLIPRATMETEEK 256
S+KP + SF S S+SL ++ + + ++ S +R L +E + +
Sbjct: 21 SLKPNSTLSFFSLPSSSLNLSLSSSSTGLCSIKPFESSFS----TRVALSGFDQLEDDVE 76
Query: 257 PALDPNAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMK 436
A P ++++GN+P +V + L L E G VE V+V+YDK +GRSR FGF TM
Sbjct: 77 VAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMS 136
Query: 437 SVGDANAVIEKLNGTTIEGREVKVNITEKPLELSSSS 547
+ + A ++ NG I+GR ++VN P + +SS
Sbjct: 137 TKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSS 173
Score = 72 bits (175), Expect = 5e-012
Identities = 35/84 (41%), Positives = 52/84 (61%)
Frame = +2
Query: 272 NAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVGDA 451
+ +SS RVY+GN+ V + L +L E G V +V+YD+ SGRSR FGF T S +
Sbjct: 202 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEV 261
Query: 452 NAVIEKLNGTTIEGREVKVNITEK 523
N I+ LNG ++GR ++V+ E+
Sbjct: 262 NDAIDSLNGVDLDGRSIRVSAAEE 285
Score = 70 bits (171), Expect = 2e-011
Identities = 39/81 (48%), Positives = 53/81 (65%)
Frame = +2
Query: 590 VDSPYKVYVGNLAKSVTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVE 769
VDS +VYVGNL+ V L+ LFSE+G V+ AKV + +S GFGFVT+SS ++V
Sbjct: 203 VDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVN 262
Query: 770 AAIVAFNNFLLEGQKIRVNKA 832
AI + N L+G+ IRV+ A
Sbjct: 263 DAIDSLNGVDLDGRSIRVSAA 283
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis
thaliana GN=At2g37220 PE=1 SV=1
Length = 289
Score = 78 bits (191), Expect = 8e-014
Identities = 36/90 (40%), Positives = 56/90 (62%)
Frame = +2
Query: 257 PALDPNAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMK 436
P + + + ++++GN+P V + QL +L E G VE V+V+YDK +GRSR FGF TM
Sbjct: 81 PPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMS 140
Query: 437 SVGDANAVIEKLNGTTIEGREVKVNITEKP 526
SV + A ++ NG ++GR ++VN P
Sbjct: 141 SVSEVEAAAQQFNGYELDGRPLRVNAGPPP 170
Score = 69 bits (168), Expect = 4e-011
Identities = 36/76 (47%), Positives = 54/76 (71%)
Frame = +2
Query: 605 KVYVGNLAKSVTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAIVA 784
+VYVGNL+ V LESLFSE+GKV+ A+V + +S GFGFVT+ S ++V+ AI +
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 785 FNNFLLEGQKIRVNKA 832
+ L+G++IRV++A
Sbjct: 265 LDGADLDGRQIRVSEA 280
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
sylvestris PE=1 SV=1
Length = 276
Score = 75 bits (184), Expect = 5e-013
Identities = 33/78 (42%), Positives = 52/78 (66%)
Frame = +2
Query: 290 RVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVGDANAVIEK 469
R+Y+GNIP + + +L ++ EHG V +V++D+ SGRSR FGF TM S + + I
Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251
Query: 470 LNGTTIEGREVKVNITEK 523
L+G T++GR ++VN E+
Sbjct: 252 LDGQTLDGRTIRVNAAEE 269
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis
thaliana GN=RBP29 PE=1 SV=2
Length = 342
Score = 72 bits (176), Expect = 4e-012
Identities = 35/87 (40%), Positives = 52/87 (59%)
Frame = +2
Query: 290 RVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVGDANAVIEK 469
++++GN+ V + QL +L E G VE V+V+YDK +GRSR FGF TM + + A ++
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 470 LNGTTIEGREVKVNITEKPLELSSSSS 550
NG EGR ++VN P + S S
Sbjct: 160 FNGYEFEGRPLRVNAGPPPPKREESFS 186
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,686,369,441
Number of Sequences: 518415
Number of Extensions: 151686369441
Number of Successful Extensions: 928182970
Number of sequences better than 0.0: 0
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