BLASTX 7.6.2
Query= UN39246 /QuerySize=992
(991 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G52150.1 | Symbols: | RNA recognition motif (... 386 1e-107
TAIR9_protein||AT3G52150.2 | Symbols: | RNA recognition motif (... 386 1e-107
TAIR9_protein||AT3G52380.1 | Symbols: CP33, PDE322 | CP33; RNA b... 143 2e-034
TAIR9_protein||AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRB... 83 2e-016
TAIR9_protein||AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotei... 78 7e-015
TAIR9_protein||AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotei... 75 4e-014
TAIR9_protein||AT3G53460.1 | Symbols: CP29 | CP29; RNA binding /... 72 4e-013
TAIR9_protein||AT3G53460.2 | Symbols: CP29 | CP29; RNA binding /... 72 4e-013
TAIR9_protein||AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotei... 67 2e-011
TAIR9_protein||AT4G13860.1 | Symbols: | glycine-rich RNA-bindin... 62 5e-010
>TAIR9_protein||AT3G52150.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19342074-19343090 FORWARD
Length = 254
Score = 386 bits (991), Expect = 1e-107
Identities = 206/259 (79%), Positives = 229/259 (88%), Gaps = 9/259 (3%)
Frame = +2
Query: 62 FLTAVVSIKPTLFSFHSESSTSLQSQTNAFALKAKAFPSVPTAISLPRTSRTRLIPRATM 241
FLT VVSIKPT+FSF SES T L ++ N F+ +K FPS+ S R+SRTR IP A
Sbjct: 4 FLTNVVSIKPTIFSFQSESFTPLHTRVNVFS--SKPFPSLAGTFS--RSSRTRFIPYAVT 59
Query: 242 ETEEKP-ALDPNAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRF 418
ETEEKP ALDP++E++RRVYIGNIPRTVTNEQLTKLVEEHGAVE+VQVMYDKYSGRSRRF
Sbjct: 60 ETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRF 119
Query: 419 GFATMKSVGDANAVIEKLNGTTIEGREVKVNITEKPLELSSSSSPDLSLLQSEDAAFVDS 598
GFATMKSV DANAV+EKLNG T+EGRE+KVNITEKP+ +SSPDLS+LQSED+AFVDS
Sbjct: 120 GFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPI----ASSPDLSVLQSEDSAFVDS 175
Query: 599 PYKVYVGNLAKSVTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAI 778
PYKVYVGNLAK+VTKEMLE+LFSEKGKV+SAKVSRVPGTSKSTGFGFVTFSS+EDVEAAI
Sbjct: 176 PYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAI 235
Query: 779 VAFNNFLLEGQKIRVNKA* 835
VA NN LLEGQKIRVNKA*
Sbjct: 236 VALNNSLLEGQKIRVNKA* 254
>TAIR9_protein||AT3G52150.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19342074-19343090 FORWARD
Length = 254
Score = 386 bits (991), Expect = 1e-107
Identities = 206/259 (79%), Positives = 229/259 (88%), Gaps = 9/259 (3%)
Frame = +2
Query: 62 FLTAVVSIKPTLFSFHSESSTSLQSQTNAFALKAKAFPSVPTAISLPRTSRTRLIPRATM 241
FLT VVSIKPT+FSF SES T L ++ N F+ +K FPS+ S R+SRTR IP A
Sbjct: 4 FLTNVVSIKPTIFSFQSESFTPLHTRVNVFS--SKPFPSLAGTFS--RSSRTRFIPYAVT 59
Query: 242 ETEEKP-ALDPNAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRF 418
ETEEKP ALDP++E++RRVYIGNIPRTVTNEQLTKLVEEHGAVE+VQVMYDKYSGRSRRF
Sbjct: 60 ETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRF 119
Query: 419 GFATMKSVGDANAVIEKLNGTTIEGREVKVNITEKPLELSSSSSPDLSLLQSEDAAFVDS 598
GFATMKSV DANAV+EKLNG T+EGRE+KVNITEKP+ +SSPDLS+LQSED+AFVDS
Sbjct: 120 GFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPI----ASSPDLSVLQSEDSAFVDS 175
Query: 599 PYKVYVGNLAKSVTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAI 778
PYKVYVGNLAK+VTKEMLE+LFSEKGKV+SAKVSRVPGTSKSTGFGFVTFSS+EDVEAAI
Sbjct: 176 PYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAI 235
Query: 779 VAFNNFLLEGQKIRVNKA* 835
VA NN LLEGQKIRVNKA*
Sbjct: 236 VALNNSLLEGQKIRVNKA* 254
>TAIR9_protein||AT3G52380.1 | Symbols: CP33, PDE322 | CP33; RNA binding |
chr3:19421619-19422855 FORWARD
Length = 330
Score = 143 bits (359), Expect = 2e-034
Identities = 74/197 (37%), Positives = 118/197 (59%), Gaps = 2/197 (1%)
Frame = +2
Query: 242 ETEEKPALDPNAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFG 421
E EE+ + R+Y+GN+P T+T+ +L+++ E G V VQ++YDK + RSR FG
Sbjct: 101 EVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFG 160
Query: 422 FATMKSVGDANAVIEKLNGTTIEGREVKVNITEKPLELSSSSSPDLSLLQSEDAAFVDSP 601
F TM S+ +A ++ N + I GR VKVN E P + + ++ + ++VDSP
Sbjct: 161 FVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVP--RGGENEVMRTKIRDNNRSYVDSP 218
Query: 602 YKVYVGNLAKSVTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAIV 781
+KVY GNL ++T + L+ F ++ VL AKV T +S GFGF++F S E+V++A+
Sbjct: 219 HKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALA 278
Query: 782 AFNNFLLEGQKIRVNKA 832
N +EG+ +R+N A
Sbjct: 279 TMNGVEVEGRALRLNLA 295
>TAIR9_protein||AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | RBP31
(31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding |
chr4:12766223-12767952 REVERSE
Length = 330
Score = 83 bits (204), Expect = 2e-016
Identities = 38/82 (46%), Positives = 55/82 (67%)
Frame = +2
Query: 278 ESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVGDANA 457
E + RVY+GN+P V N +L +L EHG V + +V+YD+ +GRSR FGF TM V + N
Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 300
Query: 458 VIEKLNGTTIEGREVKVNITEK 523
I L+G +EGR ++VN+ E+
Sbjct: 301 AISALDGQNLEGRAIRVNVAEE 322
Score = 67 bits (163), Expect = 1e-011
Identities = 38/77 (49%), Positives = 48/77 (62%)
Frame = +2
Query: 602 YKVYVGNLAKSVTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAIV 781
++VYVGNL V LE LFSE GKV+ A+V T +S GFGFVT S +++ AI
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAIS 303
Query: 782 AFNNFLLEGQKIRVNKA 832
A + LEG+ IRVN A
Sbjct: 304 ALDGQNLEGRAIRVNVA 320
Score = 65 bits (157), Expect = 6e-011
Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Frame = +2
Query: 488 EGREVKVNITEKPLELSSSSSPDLSL-LQSEDAAFVD--SPYKVYVGNLAKSVTKEMLES 658
EG E + + +E + S D+S SE A F + K++VGNLA V + L
Sbjct: 109 EGDESEGDASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAM 168
Query: 659 LFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAIVAFNNFLLEGQKIRVNKA 832
LF + G V A+V T +S GFGFVT SS ++ E A+ FN + L G+ + VNKA
Sbjct: 169 LFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKA 226
>TAIR9_protein||AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative | chr2:15634980-15636331
REVERSE
Length = 290
Score = 78 bits (191), Expect = 7e-015
Identities = 36/90 (40%), Positives = 56/90 (62%)
Frame = +2
Query: 257 PALDPNAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMK 436
P + + + ++++GN+P V + QL +L E G VE V+V+YDK +GRSR FGF TM
Sbjct: 81 PPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMS 140
Query: 437 SVGDANAVIEKLNGTTIEGREVKVNITEKP 526
SV + A ++ NG ++GR ++VN P
Sbjct: 141 SVSEVEAAAQQFNGYELDGRPLRVNAGPPP 170
Score = 69 bits (168), Expect = 3e-012
Identities = 36/76 (47%), Positives = 54/76 (71%)
Frame = +2
Query: 605 KVYVGNLAKSVTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAIVA 784
+VYVGNL+ V LESLFSE+GKV+ A+V + +S GFGFVT+ S ++V+ AI +
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 785 FNNFLLEGQKIRVNKA 832
+ L+G++IRV++A
Sbjct: 265 LDGADLDGRQIRVSEA 280
Score = 65 bits (156), Expect = 8e-011
Identities = 32/82 (39%), Positives = 49/82 (59%)
Frame = +2
Query: 275 AESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVGDAN 454
A S RVY+GN+ V + L L E G V + +V+YD+ SGRS+ FGF T S +
Sbjct: 200 AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
Query: 455 AVIEKLNGTTIEGREVKVNITE 520
I+ L+G ++GR+++V+ E
Sbjct: 260 NAIKSLDGADLDGRQIRVSEAE 281
>TAIR9_protein||AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative / RNA-binding protein
1/2/3, putative / RNA-binding protein cp31, putative |
chr5:20452677-20453965 REVERSE
Length = 290
Score = 75 bits (184), Expect = 4e-014
Identities = 39/108 (36%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Frame = +2
Query: 203 RTSRTRLIPRATMETEEKPALDPNA-ESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQ 379
R + R PR + +P P +++ R+Y+GN+P V + +L +L EHG V +
Sbjct: 183 RLTVNRAAPRGS-----RPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDAR 237
Query: 380 VMYDKYSGRSRRFGFATMKSVGDANAVIEKLNGTTIEGREVKVNITEK 523
V+ D+ +GRSR FGF M + + N I L+G +EGR +KVN+ E+
Sbjct: 238 VVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEE 285
Score = 70 bits (169), Expect = 2e-012
Identities = 37/80 (46%), Positives = 50/80 (62%)
Frame = +2
Query: 593 DSPYKVYVGNLAKSVTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEA 772
D+ +++YVGNL V LE LFSE GKV+ A+V T +S GFGFV S++ +V
Sbjct: 204 DAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNV 263
Query: 773 AIVAFNNFLLEGQKIRVNKA 832
AI A + LEG+ I+VN A
Sbjct: 264 AIAALDGQNLEGRAIKVNVA 283
>TAIR9_protein||AT3G53460.1 | Symbols: CP29 | CP29; RNA binding / poly(U)
binding | chr3:19819738-19821423 REVERSE
Length = 343
Score = 72 bits (176), Expect = 4e-013
Identities = 35/87 (40%), Positives = 52/87 (59%)
Frame = +2
Query: 290 RVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVGDANAVIEK 469
++++GN+ V + QL +L E G VE V+V+YDK +GRSR FGF TM + + A ++
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 470 LNGTTIEGREVKVNITEKPLELSSSSS 550
NG EGR ++VN P + S S
Sbjct: 160 FNGYEFEGRPLRVNAGPPPPKREESFS 186
Score = 68 bits (165), Expect = 7e-012
Identities = 35/76 (46%), Positives = 54/76 (71%)
Frame = +2
Query: 605 KVYVGNLAKSVTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAIVA 784
++YVGNL+ V LE+LF+E+GKV+ A+V + +S GFGFVT SS ++V+ AI +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 785 FNNFLLEGQKIRVNKA 832
N L+G++IRV++A
Sbjct: 318 LNGADLDGRQIRVSEA 333
Score = 66 bits (160), Expect = 3e-011
Identities = 31/80 (38%), Positives = 48/80 (60%)
Frame = +2
Query: 281 SSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVGDANAV 460
S R+Y+GN+ V + L L E G V + +V+YD+ SGRS+ FGF T+ S +
Sbjct: 255 SGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 314
Query: 461 IEKLNGTTIEGREVKVNITE 520
I LNG ++GR+++V+ E
Sbjct: 315 INSLNGADLDGRQIRVSEAE 334
>TAIR9_protein||AT3G53460.2 | Symbols: CP29 | CP29; RNA binding / poly(U)
binding | chr3:19819738-19821423 REVERSE
Length = 343
Score = 72 bits (176), Expect = 4e-013
Identities = 35/87 (40%), Positives = 52/87 (59%)
Frame = +2
Query: 290 RVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVGDANAVIEK 469
++++GN+ V + QL +L E G VE V+V+YDK +GRSR FGF TM + + A ++
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 470 LNGTTIEGREVKVNITEKPLELSSSSS 550
NG EGR ++VN P + S S
Sbjct: 160 FNGYEFEGRPLRVNAGPPPPKREESFS 186
Score = 68 bits (165), Expect = 7e-012
Identities = 35/76 (46%), Positives = 54/76 (71%)
Frame = +2
Query: 605 KVYVGNLAKSVTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAIVA 784
++YVGNL+ V LE+LF+E+GKV+ A+V + +S GFGFVT SS ++V+ AI +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 785 FNNFLLEGQKIRVNKA 832
N L+G++IRV++A
Sbjct: 318 LNGADLDGRQIRVSEA 333
Score = 66 bits (160), Expect = 3e-011
Identities = 31/80 (38%), Positives = 48/80 (60%)
Frame = +2
Query: 281 SSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVGDANAV 460
S R+Y+GN+ V + L L E G V + +V+YD+ SGRS+ FGF T+ S +
Sbjct: 255 SGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 314
Query: 461 IEKLNGTTIEGREVKVNITE 520
I LNG ++GR+++V+ E
Sbjct: 315 INSLNGADLDGRQIRVSEAE 334
>TAIR9_protein||AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative | chr1:22093678-22094540
REVERSE
Length = 259
Score = 67 bits (162), Expect = 2e-011
Identities = 34/87 (39%), Positives = 56/87 (64%)
Frame = +2
Query: 572 SEDAAFVDSPYKVYVGNLAKSVTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFS 751
+++ + ++ +K++VGNL+ +VT E L F E G V+ A+V T +S G+GFV +S
Sbjct: 167 NKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYS 226
Query: 752 SDEDVEAAIVAFNNFLLEGQKIRVNKA 832
S ++E A+ + + F LEG+ IRVN A
Sbjct: 227 SKAEMETALESLDGFELEGRAIRVNLA 253
Score = 62 bits (149), Expect = 5e-010
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Frame = +2
Query: 254 KPALDP-NAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFAT 430
KP +P E+ ++++GN+ TVT+E L E G V +V++D +GRSR +GF
Sbjct: 165 KPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVC 224
Query: 431 MKSVGDANAVIEKLNGTTIEGREVKVNITE 520
S + +E L+G +EGR ++VN+ +
Sbjct: 225 YSSKAEMETALESLDGFELEGRAIRVNLAQ 254
>TAIR9_protein||AT4G13860.1 | Symbols: | glycine-rich RNA-binding protein,
putative | chr4:8022601-8023162 FORWARD
Length = 88
Score = 62 bits (149), Expect = 5e-010
Identities = 32/73 (43%), Positives = 45/73 (61%)
Frame = +2
Query: 605 KVYVGNLAKSVTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAIVA 784
+VYVGNL+ + T +ML FS G V+ A V R T +S GFGFVT+SS + EAA+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 785 FNNFLLEGQKIRV 823
+ L G+++ V
Sbjct: 64 MDGKELNGRRVSV 76
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,642,563,871
Number of Sequences: 33410
Number of Extensions: 19642563871
Number of Successful Extensions: 631179276
Number of sequences better than 0.0: 0
|
