BLASTX 7.6.2
Query= UN39443 /QuerySize=752
(751 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G32060.1 | Symbols: | 40S ribosomal protein S... 264 6e-071
TAIR9_protein||AT2G32060.3 | Symbols: | 40S ribosomal protein S... 264 6e-071
TAIR9_protein||AT2G32060.2 | Symbols: | 40S ribosomal protein S... 264 6e-071
TAIR9_protein||AT1G15930.2 | Symbols: | 40S ribosomal protein S... 245 3e-065
TAIR9_protein||AT1G15930.1 | Symbols: | 40S ribosomal protein S... 245 3e-065
>TAIR9_protein||AT2G32060.1 | Symbols: | 40S ribosomal protein S12 (RPS12C) |
chr2:13639228-13640104 REVERSE
Length = 145
Score = 264 bits (673), Expect = 6e-071
Identities = 130/146 (89%), Positives = 140/146 (95%), Gaps = 1/146 (0%)
Frame = -3
Query: 671 MSGDEAAAAPAVVPPVSEAAAIPEDMDLLTALELTLRKARAHGGVVRGLHESAKLIEKRS 492
MSGDEA AAP VVPPV+EAA IPEDMD+ TALELT+RK+RA+GGVVRGLHESAKLIEKR+
Sbjct: 1 MSGDEAVAAP-VVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRN 59
Query: 491 AQLCVLAEDCNQPDYVKLVKALCADHSINLLTVPSAKTLGEWAGLCKIDSEGNARKVVGC 312
AQLCVLAEDCNQPDYVKLVKALCADHSI LLTVPSAKTLGEWAGLCKIDSEGNARKVVGC
Sbjct: 60 AQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGC 119
Query: 311 SCLVVKDYGEETTALNIVKKHIESN* 234
SCLV+KD+GEETTALNIVKKH++SN*
Sbjct: 120 SCLVIKDFGEETTALNIVKKHLDSN* 145
>TAIR9_protein||AT2G32060.3 | Symbols: | 40S ribosomal protein S12 (RPS12C) |
chr2:13639228-13640104 REVERSE
Length = 145
Score = 264 bits (673), Expect = 6e-071
Identities = 130/146 (89%), Positives = 140/146 (95%), Gaps = 1/146 (0%)
Frame = -3
Query: 671 MSGDEAAAAPAVVPPVSEAAAIPEDMDLLTALELTLRKARAHGGVVRGLHESAKLIEKRS 492
MSGDEA AAP VVPPV+EAA IPEDMD+ TALELT+RK+RA+GGVVRGLHESAKLIEKR+
Sbjct: 1 MSGDEAVAAP-VVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRN 59
Query: 491 AQLCVLAEDCNQPDYVKLVKALCADHSINLLTVPSAKTLGEWAGLCKIDSEGNARKVVGC 312
AQLCVLAEDCNQPDYVKLVKALCADHSI LLTVPSAKTLGEWAGLCKIDSEGNARKVVGC
Sbjct: 60 AQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGC 119
Query: 311 SCLVVKDYGEETTALNIVKKHIESN* 234
SCLV+KD+GEETTALNIVKKH++SN*
Sbjct: 120 SCLVIKDFGEETTALNIVKKHLDSN* 145
>TAIR9_protein||AT2G32060.2 | Symbols: | 40S ribosomal protein S12 (RPS12C) |
chr2:13639228-13640104 REVERSE
Length = 145
Score = 264 bits (673), Expect = 6e-071
Identities = 130/146 (89%), Positives = 140/146 (95%), Gaps = 1/146 (0%)
Frame = -3
Query: 671 MSGDEAAAAPAVVPPVSEAAAIPEDMDLLTALELTLRKARAHGGVVRGLHESAKLIEKRS 492
MSGDEA AAP VVPPV+EAA IPEDMD+ TALELT+RK+RA+GGVVRGLHESAKLIEKR+
Sbjct: 1 MSGDEAVAAP-VVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRN 59
Query: 491 AQLCVLAEDCNQPDYVKLVKALCADHSINLLTVPSAKTLGEWAGLCKIDSEGNARKVVGC 312
AQLCVLAEDCNQPDYVKLVKALCADHSI LLTVPSAKTLGEWAGLCKIDSEGNARKVVGC
Sbjct: 60 AQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGC 119
Query: 311 SCLVVKDYGEETTALNIVKKHIESN* 234
SCLV+KD+GEETTALNIVKKH++SN*
Sbjct: 120 SCLVIKDFGEETTALNIVKKHLDSN* 145
>TAIR9_protein||AT1G15930.2 | Symbols: | 40S ribosomal protein S12 (RPS12A) |
chr1:5471702-5472741 FORWARD
Length = 145
Score = 245 bits (624), Expect = 3e-065
Identities = 126/146 (86%), Positives = 132/146 (90%), Gaps = 3/146 (2%)
Frame = -3
Query: 668 SGDEAAAAPAVV-PPVSEAAAIPEDMDLLTALELTLRKARAHGGVVRGLHESAKLIEKRS 492
SGDE AAP VV PPV+E AAIPEDMDL+TALELTLRKARA+GGVVRGLHE AKLIEKR
Sbjct: 2 SGDE--AAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRV 59
Query: 491 AQLCVLAEDCNQPDYVKLVKALCADHSINLLTVPSAKTLGEWAGLCKIDSEGNARKVVGC 312
AQL VLAEDCNQPDYVKLVKALCADH + LLTVPSAKTLGEWAGLCKIDSEGNARKVVGC
Sbjct: 60 AQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGC 119
Query: 311 SCLVVKDYGEETTALNIVKKHIESN* 234
SCLVVKD+GEETTAL+IV KHI S *
Sbjct: 120 SCLVVKDFGEETTALSIVNKHIASQ* 145
>TAIR9_protein||AT1G15930.1 | Symbols: | 40S ribosomal protein S12 (RPS12A) |
chr1:5471702-5472741 FORWARD
Length = 145
Score = 245 bits (624), Expect = 3e-065
Identities = 126/146 (86%), Positives = 132/146 (90%), Gaps = 3/146 (2%)
Frame = -3
Query: 668 SGDEAAAAPAVV-PPVSEAAAIPEDMDLLTALELTLRKARAHGGVVRGLHESAKLIEKRS 492
SGDE AAP VV PPV+E AAIPEDMDL+TALELTLRKARA+GGVVRGLHE AKLIEKR
Sbjct: 2 SGDE--AAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRV 59
Query: 491 AQLCVLAEDCNQPDYVKLVKALCADHSINLLTVPSAKTLGEWAGLCKIDSEGNARKVVGC 312
AQL VLAEDCNQPDYVKLVKALCADH + LLTVPSAKTLGEWAGLCKIDSEGNARKVVGC
Sbjct: 60 AQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGC 119
Query: 311 SCLVVKDYGEETTALNIVKKHIESN* 234
SCLVVKD+GEETTAL+IV KHI S *
Sbjct: 120 SCLVVKDFGEETTALSIVNKHIASQ* 145
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,740,495,574
Number of Sequences: 33410
Number of Extensions: 19740495574
Number of Successful Extensions: 636414221
Number of sequences better than 0.0: 0
|
