BLASTX 7.6.2
Query= UN40151 /QuerySize=839
(838 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O75494|SF13A_HUMAN Splicing factor, arginine/serine-rich 13A ... 139 3e-032
sp|Q9R0U0|SF13A_MOUSE Splicing factor, arginine/serine-rich 13A ... 139 3e-032
sp|Q8WXF0|SF13B_HUMAN Splicing factor, arginine/serine-rich 13B ... 122 4e-027
sp|P30352|SFRS2_CHICK Splicing factor, arginine/serine-rich 2 OS... 118 5e-026
sp|Q3MHR5|SFRS2_BOVIN Splicing factor, arginine/serine-rich 2 OS... 116 2e-025
sp|Q01130|SFRS2_HUMAN Splicing factor, arginine/serine-rich 2 OS... 116 2e-025
sp|Q62093|SFRS2_MOUSE Splicing factor, arginine/serine-rich 2 OS... 116 2e-025
sp|Q5R1W5|SFRS2_PANTR Splicing factor, arginine/serine-rich 2 OS... 116 2e-025
sp|Q06A98|SFRS2_PIG Splicing factor, arginine/serine-rich 2 OS=S... 116 2e-025
sp|Q6PDU1|SFRS2_RAT Splicing factor, arginine/serine-rich 2 OS=R... 116 2e-025
sp|Q09511|RSP4_CAEEL Probable splicing factor, arginine/serine-r... 116 3e-025
sp|Q9BRL6|SFR2B_HUMAN Splicing factor, arginine/serine-rich 2B O... 114 7e-025
sp|P78795|EIF3G_SCHPO Eukaryotic translation initiation factor 3... 63 2e-009
sp|Q7RYH7|CWC21_NEUCR Pre-mRNA-splicing factor cwc-21 OS=Neurosp... 62 6e-009
sp|Q6C747|EIF3G_YARLI Eukaryotic translation initiation factor 3... 60 1e-008
sp|Q44560|RBPA_ANASP Putative RNA-binding protein rbpA OS=Anabae... 59 4e-008
sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xe... 59 5e-008
sp|Q4P7G1|EIF3G_USTMA Eukaryotic translation initiation factor 3... 58 6e-008
sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing prot... 56 3e-007
sp|Q7L4I2|RSRC2_HUMAN Arginine/serine-rich coiled-coil protein 2... 54 2e-006
>sp|O75494|SF13A_HUMAN Splicing factor, arginine/serine-rich 13A OS=Homo sapiens
GN=SFRS13A PE=1 SV=1
Length = 262
Score = 139 bits (349), Expect = 3e-032
Identities = 84/191 (43%), Positives = 114/191 (59%), Gaps = 23/191 (12%)
Frame = +3
Query: 162 RDPSTSLLVRNLRLDCRPDDLRRPFGRFGRLKDIYIPRNYYTGEPRGFGFVQYYDPADAA 341
R P+TSL VRN+ D R +DLRR FGR+G + D+Y+P ++YT PRGF +VQ+ D DA
Sbjct: 6 RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAE 65
Query: 342 DAKYHLDGYVLLGREITVVFAEENRKKPSEMRERSRGRTSTRSPYGYSRSPGYSRSPNYR 521
DA ++LD + GR+I + FA+ +RK P++M+ + R+ Y SR Y R YR
Sbjct: 66 DALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAK-----EGRNVYSSSRYDDYDR---YR 117
Query: 522 RSYSRSPVHRRSYSRS--PVYRRSY-------------SRSPYDENRSRRRRRSYSRSST 656
RS SRS RRS SRS YRRSY SRS D +R + R RS+SRS +
Sbjct: 118 RSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRSKS 177
Query: 657 RSRYESRSRAR 689
SR S+S+ +
Sbjct: 178 NSRSRSKSQPK 188
>sp|Q9R0U0|SF13A_MOUSE Splicing factor, arginine/serine-rich 13A OS=Mus musculus
GN=Sfrs13a PE=1 SV=2
Length = 262
Score = 139 bits (349), Expect = 3e-032
Identities = 84/191 (43%), Positives = 114/191 (59%), Gaps = 23/191 (12%)
Frame = +3
Query: 162 RDPSTSLLVRNLRLDCRPDDLRRPFGRFGRLKDIYIPRNYYTGEPRGFGFVQYYDPADAA 341
R P+TSL VRN+ D R +DLRR FGR+G + D+Y+P ++YT PRGF +VQ+ D DA
Sbjct: 6 RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAE 65
Query: 342 DAKYHLDGYVLLGREITVVFAEENRKKPSEMRERSRGRTSTRSPYGYSRSPGYSRSPNYR 521
DA ++LD + GR+I + FA+ +RK P++M+ + R+ Y SR Y R YR
Sbjct: 66 DALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAK-----EGRNVYSSSRYDDYDR---YR 117
Query: 522 RSYSRSPVHRRSYSRS--PVYRRSY-------------SRSPYDENRSRRRRRSYSRSST 656
RS SRS RRS SRS YRRSY SRS D +R + R RS+SRS +
Sbjct: 118 RSRSRSYERRRSRSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRSKS 177
Query: 657 RSRYESRSRAR 689
SR S+S+ +
Sbjct: 178 NSRSRSKSQPK 188
>sp|Q8WXF0|SF13B_HUMAN Splicing factor, arginine/serine-rich 13B OS=Homo sapiens
GN=SFRS13B PE=1 SV=1
Length = 261
Score = 122 bits (305), Expect = 4e-027
Identities = 72/178 (40%), Positives = 103/178 (57%), Gaps = 2/178 (1%)
Frame = +3
Query: 159 SRDPSTSLLVRNLRLDCRPDDLRRPFGRFGRLKDIYIPRNYYTGEPRGFGFVQYYDPADA 338
+R P+TSL +RN+ RP+DLRR FGR+G + D+YIP ++YT PRGF +VQ+ D DA
Sbjct: 5 TRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDA 64
Query: 339 ADAKYHLDGYVLLGREITVVFAEENRKKPSEMRERSRGRTSTRSPYGYSRSPGYSRSPNY 518
DA Y+L+ + GR+I + FA+ +RK P +M+ + R S S + SRSP R+ +
Sbjct: 65 EDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSP-SDHRRSRSPSQRRTRSR 123
Query: 519 RRSYSRSPVHRRSYSRSPVYRRSYSRSPYDENRSRRRRRSYSRSST-RSRYESRSRAR 689
S+ R+ S S R SYS+S RR S +S T R + SR R+R
Sbjct: 124 SSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSR 181
>sp|P30352|SFRS2_CHICK Splicing factor, arginine/serine-rich 2 OS=Gallus gallus
GN=SFRS2 PE=2 SV=1
Length = 221
Score = 118 bits (295), Expect = 5e-026
Identities = 85/178 (47%), Positives = 101/178 (56%), Gaps = 11/178 (6%)
Frame = +3
Query: 174 TSLLVRNLRLDCRPDDLRRPFGRFGRLKDIYIPRNYYTGEPRGFGFVQYYDPADAADAKY 353
TSL V NL PD LRR F ++GR+ D+YIPR+ YT E RGF FV+++D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 354 HLDGYVLLGREITVVFAEENRKKPSEMRERSRGRTSTRSPYGYSRSPGYSRSP-NYRRSY 530
+DG VL GRE+ V A R P + RG R YG S SRSP RRS
Sbjct: 74 AMDGAVLDGRELRVQMARYGR--PPDSHHSRRGPPPRR--YGSSGYGRRSRSPRRRRRSR 129
Query: 531 SRSPVHRRSYSRSPVYRRSYSRS-----PYDENRSRRRRRSYSRSSTRSRYESRSRAR 689
SRS RS SRS Y RS SRS ++SR RRS S+SS+ SR SRSR+R
Sbjct: 130 SRSRSRSRSRSRSR-YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSR 186
>sp|Q3MHR5|SFRS2_BOVIN Splicing factor, arginine/serine-rich 2 OS=Bos taurus
GN=SFRS2 PE=2 SV=3
Length = 221
Score = 116 bits (290), Expect = 2e-025
Identities = 84/178 (47%), Positives = 100/178 (56%), Gaps = 11/178 (6%)
Frame = +3
Query: 174 TSLLVRNLRLDCRPDDLRRPFGRFGRLKDIYIPRNYYTGEPRGFGFVQYYDPADAADAKY 353
TSL V NL PD LRR F ++GR+ D+YIPR+ YT E RGF FV+++D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 354 HLDGYVLLGREITVVFAEENRKKPSEMRERSRGRTSTRSPYGYSRSPGYSRSP-NYRRSY 530
+DG VL GRE+ V A R P + RG R YG SRSP RRS
Sbjct: 74 AMDGAVLDGRELRVQMARYGR--PPDSHHSRRGPPPRR--YGGGGYGRRSRSPRRRRRSR 129
Query: 531 SRSPVHRRSYSRSPVYRRSYSRS-----PYDENRSRRRRRSYSRSSTRSRYESRSRAR 689
SRS RS SRS Y RS SRS ++SR RRS S+SS+ SR SRSR+R
Sbjct: 130 SRSRSRSRSRSRSR-YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSR 186
>sp|Q01130|SFRS2_HUMAN Splicing factor, arginine/serine-rich 2 OS=Homo sapiens
GN=SFRS2 PE=1 SV=4
Length = 221
Score = 116 bits (290), Expect = 2e-025
Identities = 84/178 (47%), Positives = 100/178 (56%), Gaps = 11/178 (6%)
Frame = +3
Query: 174 TSLLVRNLRLDCRPDDLRRPFGRFGRLKDIYIPRNYYTGEPRGFGFVQYYDPADAADAKY 353
TSL V NL PD LRR F ++GR+ D+YIPR+ YT E RGF FV+++D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 354 HLDGYVLLGREITVVFAEENRKKPSEMRERSRGRTSTRSPYGYSRSPGYSRSP-NYRRSY 530
+DG VL GRE+ V A R P + RG R YG SRSP RRS
Sbjct: 74 AMDGAVLDGRELRVQMARYGR--PPDSHHSRRGPPPRR--YGGGGYGRRSRSPRRRRRSR 129
Query: 531 SRSPVHRRSYSRSPVYRRSYSRS-----PYDENRSRRRRRSYSRSSTRSRYESRSRAR 689
SRS RS SRS Y RS SRS ++SR RRS S+SS+ SR SRSR+R
Sbjct: 130 SRSRSRSRSRSRSR-YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSR 186
>sp|Q62093|SFRS2_MOUSE Splicing factor, arginine/serine-rich 2 OS=Mus musculus
GN=Sfrs2 PE=1 SV=4
Length = 221
Score = 116 bits (290), Expect = 2e-025
Identities = 84/178 (47%), Positives = 100/178 (56%), Gaps = 11/178 (6%)
Frame = +3
Query: 174 TSLLVRNLRLDCRPDDLRRPFGRFGRLKDIYIPRNYYTGEPRGFGFVQYYDPADAADAKY 353
TSL V NL PD LRR F ++GR+ D+YIPR+ YT E RGF FV+++D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 354 HLDGYVLLGREITVVFAEENRKKPSEMRERSRGRTSTRSPYGYSRSPGYSRSP-NYRRSY 530
+DG VL GRE+ V A R P + RG R YG SRSP RRS
Sbjct: 74 AMDGAVLDGRELRVQMARYGR--PPDSHHSRRGPPPRR--YGGGGYGRRSRSPRRRRRSR 129
Query: 531 SRSPVHRRSYSRSPVYRRSYSRS-----PYDENRSRRRRRSYSRSSTRSRYESRSRAR 689
SRS RS SRS Y RS SRS ++SR RRS S+SS+ SR SRSR+R
Sbjct: 130 SRSRSRSRSRSRSR-YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSR 186
>sp|Q5R1W5|SFRS2_PANTR Splicing factor, arginine/serine-rich 2 OS=Pan
troglodytes GN=SFRS2 PE=2 SV=3
Length = 221
Score = 116 bits (290), Expect = 2e-025
Identities = 84/178 (47%), Positives = 100/178 (56%), Gaps = 11/178 (6%)
Frame = +3
Query: 174 TSLLVRNLRLDCRPDDLRRPFGRFGRLKDIYIPRNYYTGEPRGFGFVQYYDPADAADAKY 353
TSL V NL PD LRR F ++GR+ D+YIPR+ YT E RGF FV+++D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 354 HLDGYVLLGREITVVFAEENRKKPSEMRERSRGRTSTRSPYGYSRSPGYSRSP-NYRRSY 530
+DG VL GRE+ V A R P + RG R YG SRSP RRS
Sbjct: 74 AMDGAVLDGRELRVQMARYGR--PPDSHHSRRGPPPRR--YGGGGYGRRSRSPRRRRRSR 129
Query: 531 SRSPVHRRSYSRSPVYRRSYSRS-----PYDENRSRRRRRSYSRSSTRSRYESRSRAR 689
SRS RS SRS Y RS SRS ++SR RRS S+SS+ SR SRSR+R
Sbjct: 130 SRSRSRSRSRSRSR-YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSR 186
>sp|Q06A98|SFRS2_PIG Splicing factor, arginine/serine-rich 2 OS=Sus scrofa
GN=SFRS2 PE=2 SV=1
Length = 221
Score = 116 bits (290), Expect = 2e-025
Identities = 84/178 (47%), Positives = 100/178 (56%), Gaps = 11/178 (6%)
Frame = +3
Query: 174 TSLLVRNLRLDCRPDDLRRPFGRFGRLKDIYIPRNYYTGEPRGFGFVQYYDPADAADAKY 353
TSL V NL PD LRR F ++GR+ D+YIPR+ YT E RGF FV+++D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 354 HLDGYVLLGREITVVFAEENRKKPSEMRERSRGRTSTRSPYGYSRSPGYSRSP-NYRRSY 530
+DG VL GRE+ V A R P + RG R YG SRSP RRS
Sbjct: 74 AMDGAVLDGRELRVQMARYGR--PPDSHHSRRGPPPRR--YGGGGYGRRSRSPRRRRRSR 129
Query: 531 SRSPVHRRSYSRSPVYRRSYSRS-----PYDENRSRRRRRSYSRSSTRSRYESRSRAR 689
SRS RS SRS Y RS SRS ++SR RRS S+SS+ SR SRSR+R
Sbjct: 130 SRSRSRSRSRSRSR-YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSR 186
>sp|Q6PDU1|SFRS2_RAT Splicing factor, arginine/serine-rich 2 OS=Rattus
norvegicus GN=Sfrs2 PE=1 SV=3
Length = 221
Score = 116 bits (290), Expect = 2e-025
Identities = 84/178 (47%), Positives = 100/178 (56%), Gaps = 11/178 (6%)
Frame = +3
Query: 174 TSLLVRNLRLDCRPDDLRRPFGRFGRLKDIYIPRNYYTGEPRGFGFVQYYDPADAADAKY 353
TSL V NL PD LRR F ++GR+ D+YIPR+ YT E RGF FV+++D DA DA
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 354 HLDGYVLLGREITVVFAEENRKKPSEMRERSRGRTSTRSPYGYSRSPGYSRSP-NYRRSY 530
+DG VL GRE+ V A R P + RG R YG SRSP RRS
Sbjct: 74 AMDGAVLDGRELRVQMARYGR--PPDSHHSRRGPPPRR--YGGGGYGRRSRSPRRRRRSR 129
Query: 531 SRSPVHRRSYSRSPVYRRSYSRS-----PYDENRSRRRRRSYSRSSTRSRYESRSRAR 689
SRS RS SRS Y RS SRS ++SR RRS S+SS+ SR SRSR+R
Sbjct: 130 SRSRSRSRSRSRSR-YSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSR 186
>sp|Q09511|RSP4_CAEEL Probable splicing factor, arginine/serine-rich 4
OS=Caenorhabditis elegans GN=rsp-4 PE=2 SV=1
Length = 196
Score = 116 bits (288), Expect = 3e-025
Identities = 77/180 (42%), Positives = 104/180 (57%), Gaps = 10/180 (5%)
Frame = +3
Query: 174 TSLLVRNLRLDCRPDDLRRPFGRFGRLKDIYIPRNYYTGEPRGFGFVQYYDPADAADAKY 353
TSL + NL P+DLRR F R+G + D++IPR+ Y+ + +GFGFV++Y+ DA A
Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78
Query: 354 HLDGYVLLGREITVVFAEENRKKPSEM---RERSRGRTSTRSPYGYSRSPGYSRSPNYRR 524
DG ++ GRE+ V A+ +R PS+ R GR +RSP SRSP YSRS + RR
Sbjct: 79 RTDGKLVDGRELRVTLAKYDR--PSDERGGRGGGGGRRRSRSPRRRSRSPRYSRSRSPRR 136
Query: 525 SYSRSPVHRRSYSRSPVYRRSYSRS-----PYDENRSRRRRRSYSRSSTRSRYESRSRAR 689
S SR+ R RR SRS P E+ S + RRS SRS++RS SRS +R
Sbjct: 137 SRSRTRSPPSRDRRDSPDRRDNSRSRSRSPPPREDGSPKERRSRSRSASRSPSRSRSNSR 196
>sp|Q9BRL6|SFR2B_HUMAN Splicing factor, arginine/serine-rich 2B OS=Homo sapiens
GN=SFRS2B PE=1 SV=1
Length = 282
Score = 114 bits (285), Expect = 7e-025
Identities = 81/178 (45%), Positives = 96/178 (53%), Gaps = 13/178 (7%)
Frame = +3
Query: 165 DPSTSLLVRNLRLDCRPDDLRRPFGRFGRLKDIYIPRNYYTGEPRGFGFVQYYDPADAAD 344
D +L V NL PD LRR F ++GR+ D+YIPR +T PRGF FV+++D DA D
Sbjct: 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQD 70
Query: 345 AKYHLDGYVLLGREITVVFAEENRK-----KPSEMRERSRGRTSTRSPYGYSRSPGYSRS 509
A+ +DG L GRE+ V A R+ + E R RSRG R Y R SRS
Sbjct: 71 AEAAMDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRR---SRS 127
Query: 510 PNYR-RSYSRSPVHRRSYSRSPVYRRSYSRSPYDE---NRSRRRRRSYSRSSTR-SRY 668
P R RS SR P RS SRS YSRSPY +RSR R YSRS R SRY
Sbjct: 128 PRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRY 185
>sp|P78795|EIF3G_SCHPO Eukaryotic translation initiation factor 3 subunit G
OS=Schizosaccharomyces pombe GN=tif35 PE=1 SV=2
Length = 282
Score = 63 bits (152), Expect = 2e-009
Identities = 32/71 (45%), Positives = 43/71 (60%)
Frame = +3
Query: 156 RSRDPSTSLLVRNLRLDCRPDDLRRPFGRFGRLKDIYIPRNYYTGEPRGFGFVQYYDPAD 335
R RD S +L V NL D R ++LR F RFG ++ +Y+ ++ TG +GF FV YYD
Sbjct: 196 RERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDC 255
Query: 336 AADAKYHLDGY 368
A A+ LDGY
Sbjct: 256 AIKARDRLDGY 266
>sp|Q7RYH7|CWC21_NEUCR Pre-mRNA-splicing factor cwc-21 OS=Neurospora crassa
GN=cwc-21 PE=3 SV=1
Length = 344
Score = 62 bits (148), Expect = 6e-009
Identities = 43/94 (45%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Frame = +3
Query: 408 ENRKKPSEMRERSRGRTSTRSPYGYSRSPGYSRSPNYRRSYSRSPVHRRSYSRSPVYRRS 587
+ + S +RERSR TRSP R G SRSP RS SRS RSYSRS R
Sbjct: 254 DRSRSRSPIRERSR----TRSPV---RDTGRSRSPVSERSLSRSRSRSRSYSRSRSPPRR 306
Query: 588 YSRSPYDENRSRRRRRSYSRSSTRSRYESRSRAR 689
+ D + SR R RSYSRS R RY + R R
Sbjct: 307 RAADSQDRSLSRSRSRSYSRSPDRDRYREKYRDR 340
>sp|Q6C747|EIF3G_YARLI Eukaryotic translation initiation factor 3 subunit G
OS=Yarrowia lipolytica GN=TIF35 PE=3 SV=1
Length = 294
Score = 60 bits (145), Expect = 1e-008
Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Frame = +3
Query: 105 PPRRRYRSP----SPVGHYRGRS-RDPSTSLLVRNLRLDCRPDDLRRPFGRFGRLKDIYI 269
PP R + P P G GRS D +L V NL + DDLRR FG++G + +Y+
Sbjct: 186 PPHLRNKGPGGPGGPGGAAGGRSDDDDELTLRVTNLSEEATDDDLRRMFGKYGMINRVYV 245
Query: 270 PRNYYTGEPRGFGFVQYYDPADAADAKYHLDGY 368
++ TG PRGF FV Y + A A +DG+
Sbjct: 246 AKDRDTGRPRGFAFVTYTLKSHAQAALEAMDGH 278
>sp|Q44560|RBPA_ANASP Putative RNA-binding protein rbpA OS=Anabaena sp. (strain
PCC 7120) GN=rbpA PE=3 SV=3
Length = 102
Score = 59 bits (141), Expect = 4e-008
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Frame = +3
Query: 177 SLLVRNLRLDCRPDDLRRPFGRFGRLKDIYIPRNYYTGEPRGFGFVQYYDPADAADAKYH 356
S+ V NL + D L F +G +K + +P + TG+PRGFGFV+ A+ A A
Sbjct: 2 SIYVGNLSYEVTQDTLSAVFAEYGTVKRVQLPTDRETGQPRGFGFVEMGSEAEEAAAIEA 61
Query: 357 LDGYVLLGREITVVFAEENRKKPSEMRERSRG 452
LDG +GR++ V N+ KP E R S G
Sbjct: 62 LDGAEWMGRDLKV-----NKAKPREDRGPSGG 88
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis
GN=cirbp-b PE=1 SV=1
Length = 166
Score = 59 bits (140), Expect = 5e-008
Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 17/167 (10%)
Frame = +3
Query: 180 LLVRNLRLDCRPDDLRRPFGRFGRLKDIYIPRNYYTGEPRGFGFVQYYDPADAADAKYHL 359
L + L D + L + F ++G++ ++ + ++ T RGFGFV + +P DA DA +
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 360 DGYVLLGREITVVFAEENRKKPSEMRERSRGRTS--------TRSPYGYSRSPGYSRSPN 515
+G + GR+I V ++ K + R RG +S R G R G SR N
Sbjct: 67 NGKAVDGRQIRV---DQAGKSSGDRRGGYRGGSSGGRGFFRGGRGRGGGDRGYGSSRFDN 123
Query: 516 YRRSYSRSPVHRRSYSRSPVYRRSYSRSPYDENRSRRRRRSYSRSST 656
Y S R YS S+ Y + R SY +T
Sbjct: 124 RSGGYGGSSGSRDYYS------SGRSQGSYGDRAGGSYRDSYDSYAT 164
>sp|Q4P7G1|EIF3G_USTMA Eukaryotic translation initiation factor 3 subunit G
OS=Ustilago maydis GN=TIF35 PE=3 SV=1
Length = 308
Score = 58 bits (139), Expect = 6e-008
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Frame = +3
Query: 105 PPRRRYRSPSP---VGHYRGRSRDPSTSLLVRNLRLDCRPDDLRRPFGRFGRLKDIYIPR 275
PP R + P +G G SRD +L V NL D DDLR F RFGR+ +Y+ R
Sbjct: 199 PPSMRGGAKGPGEKMGGLGGMSRDDLPTLRVTNLSEDADDDDLRELFMRFGRVVRVYVGR 258
Query: 276 NYYTGEPRGFGFVQYYDPADAADAKYHLDG 365
+ TG +G+ FV + + DA A+ +DG
Sbjct: 259 DRETGICKGYAFVSFENREDADRARQKVDG 288
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1
OS=Dictyostelium discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 56 bits (133), Expect = 3e-007
Identities = 27/76 (35%), Positives = 44/76 (57%)
Frame = +3
Query: 171 STSLLVRNLRLDCRPDDLRRPFGRFGRLKDIYIPRNYYTGEPRGFGFVQYYDPADAADAK 350
S + VRNL + +DL + F +FG++ +I+IP +Y + + +G F+ Y P +A A
Sbjct: 360 SGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQAL 419
Query: 351 YHLDGYVLLGREITVV 398
+DG V GR I V+
Sbjct: 420 NDMDGKVFQGRLIHVL 435
>sp|Q7L4I2|RSRC2_HUMAN Arginine/serine-rich coiled-coil protein 2 OS=Homo
sapiens GN=RSRC2 PE=1 SV=1
Length = 434
Score = 54 bits (127), Expect = 2e-006
Identities = 41/97 (42%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Frame = +3
Query: 408 ENRKKPSEMRERSRGRTSTRSPYGYSRSPGYSRSPNYRRSYSRSPVHRRSYSRSPVYRRS 587
E+R K E R+ SRGR+ +RS R SRS ++S SRS ++S SRS ++S
Sbjct: 109 EDRHKRKE-RKSSRGRSHSRSRSRERRH--RSRSRERKKSRSRSRERKKSRSRSRERKKS 165
Query: 588 YSRSPYDENRSRRRRRSYSRSSTRSRYESRSRARVLD 698
SRS + R R R RS SR R+R SR+R+R D
Sbjct: 166 RSRSRERKRRIRSRSRSRSRHRHRTRSRSRTRSRSRD 202
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,740,548,379
Number of Sequences: 518415
Number of Extensions: 155740548379
Number of Successful Extensions: 952083542
Number of sequences better than 0.0: 0
|
