BLASTX 7.6.2
Query= UN40337 /QuerySize=804
(803 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G04600.1 | Symbols: | RNA recognition motif (... 323 1e-088
TAIR9_protein||AT5G51300.1 | Symbols: | splicing factor-related... 54 8e-008
TAIR9_protein||AT5G51300.2 | Symbols: | splicing factor-related... 54 8e-008
TAIR9_protein||AT5G51300.3 | Symbols: | splicing factor-related... 54 8e-008
TAIR9_protein||AT3G47120.1 | Symbols: | RNA recognition motif (... 54 1e-007
TAIR9_protein||AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33 | SR3... 51 9e-007
TAIR9_protein||AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33 | SR3... 51 9e-007
TAIR9_protein||AT3G13570.1 | Symbols: SCL30A | SCL30a; RNA bindi... 51 9e-007
TAIR9_protein||AT5G47320.1 | Symbols: RPS19 | RPS19 (RIBOSOMAL P... 50 1e-006
TAIR9_protein||AT5G09880.1 | Symbols: | RNA recognition motif (... 49 3e-006
TAIR9_protein||AT1G13190.1 | Symbols: | RNA recognition motif (... 49 3e-006
>TAIR9_protein||AT5G04600.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:1323700-1325486 FORWARD
Length = 223
Score = 323 bits (826), Expect = 1e-088
Identities = 168/224 (75%), Positives = 189/224 (84%), Gaps = 13/224 (5%)
Frame = +1
Query: 73 AKAKKALKKNMKKISASAATSSSSQLAIPQKPKPSADFLPLEGGPARKAP-ATKPIENKS 249
AKAKKALKKNMKK++ASA SSSQL +PQ PKPSADFLPLEGGPARKAP T P++NK+
Sbjct: 3 AKAKKALKKNMKKVAASA---SSSQLPLPQNPKPSADFLPLEGGPARKAPVTTPPLQNKA 59
Query: 250 TVLYIGRLPHGFYETEIEAFFTQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAG 429
TVLYIGR+PHGFYETEIEAFF+QFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAG
Sbjct: 60 TVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAG 119
Query: 430 AMNDYLLLEHMLQVRVIPPEDVKPNLWKGFKCQYKPVDWVQIERKQHNKERTLEEHRKML 609
AMNDYLL+EHML+V VI PE+VKPNLW+GFKC +KPVD VQIER+Q NKERTLEEHRKML
Sbjct: 120 AMNDYLLMEHMLKVHVIEPENVKPNLWRGFKCNFKPVDSVQIERRQLNKERTLEEHRKML 179
Query: 610 NKL*NVIRKEKENR----SCWNRISCPELVG--IPAYLEIKFSE 723
K +++K+++ R + CPELVG P IKFSE
Sbjct: 180 QK---IVKKDQKRRKRIEAAGIEYECPELVGNTQPVPKRIKFSE 220
>TAIR9_protein||AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE
Length = 805
Score = 54 bits (129), Expect = 8e-008
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Frame = +1
Query: 205 PARKAPATKP--IENKSTVLYIGRLPHGFYETEIEAFFTQFGTVKRVRVARNKKTGKSKH 378
P + TKP E T LYIG LP + + F+ FG + +V +++ TG SK
Sbjct: 463 PGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKG 522
Query: 379 FGFIQFEDPEVAEIAAGAMNDYLLLEHMLQVRVI---PPEDVKP 501
+GF+++ D ++A A AMN Y L VR+ PP P
Sbjct: 523 YGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIAGKSPPPIAPP 566
>TAIR9_protein||AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE
Length = 805
Score = 54 bits (129), Expect = 8e-008
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Frame = +1
Query: 205 PARKAPATKP--IENKSTVLYIGRLPHGFYETEIEAFFTQFGTVKRVRVARNKKTGKSKH 378
P + TKP E T LYIG LP + + F+ FG + +V +++ TG SK
Sbjct: 463 PGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKG 522
Query: 379 FGFIQFEDPEVAEIAAGAMNDYLLLEHMLQVRVI---PPEDVKP 501
+GF+++ D ++A A AMN Y L VR+ PP P
Sbjct: 523 YGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIAGKSPPPIAPP 566
>TAIR9_protein||AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE
Length = 805
Score = 54 bits (129), Expect = 8e-008
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Frame = +1
Query: 205 PARKAPATKP--IENKSTVLYIGRLPHGFYETEIEAFFTQFGTVKRVRVARNKKTGKSKH 378
P + TKP E T LYIG LP + + F+ FG + +V +++ TG SK
Sbjct: 463 PGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKG 522
Query: 379 FGFIQFEDPEVAEIAAGAMNDYLLLEHMLQVRVI---PPEDVKP 501
+GF+++ D ++A A AMN Y L VR+ PP P
Sbjct: 523 YGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIAGKSPPPIAPP 566
>TAIR9_protein||AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE
Length = 353
Score = 54 bits (127), Expect = 1e-007
Identities = 26/75 (34%), Positives = 43/75 (57%)
Frame = +1
Query: 247 STVLYIGRLPHGFYETEIEAFFTQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAA 426
S +Y+G +P E ++ A F+Q+G + V + R+K TGKSK F F+ +ED +A
Sbjct: 35 SAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAV 94
Query: 427 GAMNDYLLLEHMLQV 471
+N L+L ++V
Sbjct: 95 DNLNGALVLGRTIKV 109
>TAIR9_protein||AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33 | SR33; RNA binding
/ protein binding | chr1:20630676-20632695 FORWARD
Length = 288
Score = 51 bits (120), Expect = 9e-007
Identities = 31/84 (36%), Positives = 41/84 (48%)
Frame = +1
Query: 250 TVLYIGRLPHGFYETEIEAFFTQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAG 429
T L + L H + ++ F QFG VK + + R+ TG + FGF+QF DP A A
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKH 95
Query: 430 AMNDYLLLEHMLQVRVIPPEDVKP 501
M+ YLLL L V KP
Sbjct: 96 HMDGYLLLGRELTVVFAEENRKKP 119
>TAIR9_protein||AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33 | SR33; RNA binding
/ protein binding | chr1:20630676-20632567 FORWARD
Length = 221
Score = 51 bits (120), Expect = 9e-007
Identities = 31/84 (36%), Positives = 41/84 (48%)
Frame = +1
Query: 250 TVLYIGRLPHGFYETEIEAFFTQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAG 429
T L + L H + ++ F QFG VK + + R+ TG + FGF+QF DP A A
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKH 95
Query: 430 AMNDYLLLEHMLQVRVIPPEDVKP 501
M+ YLLL L V KP
Sbjct: 96 HMDGYLLLGRELTVVFAEENRKKP 119
>TAIR9_protein||AT3G13570.1 | Symbols: SCL30A | SCL30a; RNA binding / nucleic
acid binding / nucleotide binding | chr3:4429564-4431602 REVERSE
Length = 263
Score = 51 bits (120), Expect = 9e-007
Identities = 32/84 (38%), Positives = 41/84 (48%)
Frame = +1
Query: 250 TVLYIGRLPHGFYETEIEAFFTQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAG 429
T L + L H + ++ F QFG VK + + R+ TG + FGFIQF DP A A
Sbjct: 37 TSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKH 96
Query: 430 AMNDYLLLEHMLQVRVIPPEDVKP 501
M+ YLLL L V KP
Sbjct: 97 QMDGYLLLGRELTVVFAEENRKKP 120
>TAIR9_protein||AT5G47320.1 | Symbols: RPS19 | RPS19 (RIBOSOMAL PROTEIN S19);
RNA binding | chr5:19203801-19204951 FORWARD
Length = 213
Score = 50 bits (118), Expect = 1e-006
Identities = 30/77 (38%), Positives = 39/77 (50%)
Frame = +1
Query: 247 STVLYIGRLPHGFYETEIEAFFTQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAA 426
ST LYIG L G E ++ F+ F V RV NK TG+S+ +GF+ F + A A
Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89
Query: 427 GAMNDYLLLEHMLQVRV 477
AMN L + V V
Sbjct: 90 SAMNGQELNGFNISVNV 106
>TAIR9_protein||AT5G09880.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:3081646-3085179 REVERSE
Length = 528
Score = 49 bits (116), Expect = 3e-006
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Frame = +1
Query: 100 NMKKISASAATSSSSQLAIPQKPKPSADFLPLEGGPARKAPATKPIENKSTVLYIGRLPH 279
++ + + A S L P KPS L + T P + K LY+G L
Sbjct: 218 DVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRK---LYVGNLHF 274
Query: 280 GFYETEIEAFFTQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDYL 447
E ++ F FG V+ V++ + +TG+ K FGFIQF E ++ A A+N L
Sbjct: 275 NMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKL 330
>TAIR9_protein||AT1G13190.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:4499633-4501354 FORWARD
Length = 574
Score = 49 bits (115), Expect = 3e-006
Identities = 25/88 (28%), Positives = 45/88 (51%)
Frame = +1
Query: 235 IENKSTVLYIGRLPHGFYETEIEAFFTQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVA 414
++N +T+L++G L + EIE+ +Q+G VK ++ + +GKSK + ++F D A
Sbjct: 197 VDNGNTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAA 256
Query: 415 EIAAGAMNDYLLLEHMLQVRVIPPEDVK 498
MN ++ V PE +K
Sbjct: 257 AACKEGMNGFIFNGKACVVAFASPETLK 284
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,064,290,501
Number of Sequences: 33410
Number of Extensions: 20064290501
Number of Successful Extensions: 642127729
Number of sequences better than 0.0: 0
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