BLASTX 7.6.2
Query= UN40705 /QuerySize=933
(932 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|297846376|ref|XP_002891069.1| ATUPF3/UPF3 [Arabidopsis lyrata... 211 1e-052
gi|30692963|ref|NP_174660.2| Smg-4/UPF3-like protein [Arabidopsi... 191 2e-046
gi|186488168|ref|NP_001117406.1| Smg-4/UPF3-like protein [Arabid... 191 2e-046
gi|10086477|gb|AAG12537.1|AC015446_18 Unknown protein [Arabidops... 173 6e-041
gi|255570968|ref|XP_002526435.1| conserved hypothetical protein ... 112 1e-022
gi|224119924|ref|XP_002331096.1| predicted protein [Populus tric... 60 6e-007
gi|147777847|emb|CAN60293.1| hypothetical protein VITISV_023400 ... 58 2e-006
gi|297739512|emb|CBI29694.3| unnamed protein product [Vitis vini... 58 2e-006
gi|225465189|ref|XP_002264276.1| PREDICTED: hypothetical protein... 58 2e-006
>gi|297846376|ref|XP_002891069.1| ATUPF3/UPF3 [Arabidopsis lyrata subsp.
lyrata]
Length = 486
Score = 211 bits (537), Expect = 1e-052
Identities = 107/136 (78%), Positives = 112/136 (82%), Gaps = 2/136 (1%)
Frame = -3
Query: 930 ESRVEPLEAENSKRSPRPGNTRAGKDYQVSGTNSEKQERRPRNKERPDRVVWTPRRSDGS 751
E RVEP EAEN KR PRP NTRAGKDY SGT SEKQERR RNK+RPDRVVW P R DGS
Sbjct: 336 EQRVEPSEAENYKRPPRPANTRAGKDYHASGTISEKQERRTRNKDRPDRVVWAPLRRDGS 395
Query: 750 SISEDQLSSSIANNGEVKERMLLQRSGEVVNSSGGHSLENGSTRHSGRRVGARNRKEEGF 571
+ISEDQ SS NNGEVK+RM QRSGEVVNSSGGH+LENGS RHS RRVG RNRKEE
Sbjct: 396 NISEDQPLSSAGNNGEVKDRMFSQRSGEVVNSSGGHTLENGSARHSSRRVGGRNRKEE-- 453
Query: 570 AMTGEGKSSRRGGGGG 523
MTGEGK+SRRGGGGG
Sbjct: 454 LMTGEGKTSRRGGGGG 469
>gi|30692963|ref|NP_174660.2| Smg-4/UPF3-like protein [Arabidopsis thaliana]
Length = 482
Score = 191 bits (484), Expect = 2e-046
Identities = 101/136 (74%), Positives = 107/136 (78%), Gaps = 6/136 (4%)
Frame = -3
Query: 930 ESRVEPLEAENSKRSPRPGNTRAGKDYQVSGTNSEKQERRPRNKERPDRVVWTPRRSDGS 751
E RVEP EAEN KR RP NTRAGKDY SGT SEKQERR RNK+RPDRV+W PRR DG
Sbjct: 336 EQRVEPSEAENYKRPSRPANTRAGKDYHTSGTISEKQERRTRNKDRPDRVMWAPRR-DG- 393
Query: 750 SISEDQLSSSIANNGEVKERMLLQRSGEVVNSSGGHSLENGSTRHSGRRVGARNRKEEGF 571
SEDQ SS NNGEVK+RM QRSGEVVNSSGGH+LENGS RHS RRVG RNRKEE
Sbjct: 394 --SEDQPLSSAGNNGEVKDRMFSQRSGEVVNSSGGHTLENGSARHSSRRVGGRNRKEE-- 449
Query: 570 AMTGEGKSSRRGGGGG 523
+ GEGK+SRRG GGG
Sbjct: 450 VVIGEGKTSRRGSGGG 465
>gi|186488168|ref|NP_001117406.1| Smg-4/UPF3-like protein [Arabidopsis
thaliana]
Length = 484
Score = 191 bits (484), Expect = 2e-046
Identities = 101/136 (74%), Positives = 107/136 (78%), Gaps = 6/136 (4%)
Frame = -3
Query: 930 ESRVEPLEAENSKRSPRPGNTRAGKDYQVSGTNSEKQERRPRNKERPDRVVWTPRRSDGS 751
E RVEP EAEN KR RP NTRAGKDY SGT SEKQERR RNK+RPDRV+W PRR DG
Sbjct: 338 EQRVEPSEAENYKRPSRPANTRAGKDYHTSGTISEKQERRTRNKDRPDRVMWAPRR-DG- 395
Query: 750 SISEDQLSSSIANNGEVKERMLLQRSGEVVNSSGGHSLENGSTRHSGRRVGARNRKEEGF 571
SEDQ SS NNGEVK+RM QRSGEVVNSSGGH+LENGS RHS RRVG RNRKEE
Sbjct: 396 --SEDQPLSSAGNNGEVKDRMFSQRSGEVVNSSGGHTLENGSARHSSRRVGGRNRKEE-- 451
Query: 570 AMTGEGKSSRRGGGGG 523
+ GEGK+SRRG GGG
Sbjct: 452 VVIGEGKTSRRGSGGG 467
>gi|10086477|gb|AAG12537.1|AC015446_18 Unknown protein [Arabidopsis thaliana]
Length = 525
Score = 173 bits (436), Expect = 6e-041
Identities = 90/118 (76%), Positives = 94/118 (79%), Gaps = 4/118 (3%)
Frame = -3
Query: 930 ESRVEPLEAENSKRSPRPGNTRAGKDYQVSGTNSEKQERRPRNKERPDRVVWTPRRSDGS 751
E RVEP EAEN KR RP NTRAGKDY SGT SEKQERR RNK+RPDRV+W PRR DG
Sbjct: 338 EQRVEPSEAENYKRPSRPANTRAGKDYHTSGTISEKQERRTRNKDRPDRVMWAPRR-DG- 395
Query: 750 SISEDQLSSSIANNGEVKERMLLQRSGEVVNSSGGHSLENGSTRHSGRRVGARNRKEE 577
SEDQ SS NNGEVK+RM QRSGEVVNSSGGH+LENGS RHS RRVG RNRKEE
Sbjct: 396 --SEDQPLSSAGNNGEVKDRMFSQRSGEVVNSSGGHTLENGSARHSSRRVGGRNRKEE 451
>gi|255570968|ref|XP_002526435.1| conserved hypothetical protein [Ricinus
communis]
Length = 472
Score = 112 bits (279), Expect = 1e-022
Identities = 76/179 (42%), Positives = 97/179 (54%), Gaps = 40/179 (22%)
Frame = -3
Query: 894 KRSPRPGNTR--------------AGKDYQVSGTNSEKQERRPRNKERPDRVVWTP-RRS 760
KR PRP + + G D + G + EKQE+R RNK+RPDRVVWTP RRS
Sbjct: 303 KRLPRPAHVQLVLKDVNGSSDDKFVGND--LHGFSGEKQEKRTRNKDRPDRVVWTPLRRS 360
Query: 759 DGSSISEDQLSSSIA------------NNGEVKERMLLQRSGEVVNSSGGH----SLENG 628
DGS S++ LSSS + N G++K RSG+V G SL+NG
Sbjct: 361 DGSYASDESLSSSASQSTHTGQDSSQGNLGDIKVDSSNSRSGDVKTLGSGRSSHSSLDNG 420
Query: 627 STRHSGRRVGARNRKEEGFAMTGEGKSSRRGGGGGGGGGGGGPNSHEKQMWIQKSSSGT 451
S +H GRR G + + + EGK S+RGGG G G SHEKQ+W+QKSSSG+
Sbjct: 421 SHKHFGRR-GPSHTVRDADGSSLEGKPSKRGGGASGYG------SHEKQVWVQKSSSGS 472
>gi|224119924|ref|XP_002331096.1| predicted protein [Populus trichocarpa]
Length = 225
Score = 60 bits (143), Expect = 6e-007
Identities = 31/53 (58%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Frame = -3
Query: 879 PGNTRAGKDYQVSGTNSEKQERRPRNKERPDRVVWTPRRSDGSSISEDQLSSS 721
P + G D + G +EKQERR RNK+RPDRVVWT RRS+GS S++ LSSS
Sbjct: 28 PDDKVVGND--LHGFPNEKQERRTRNKDRPDRVVWTLRRSEGSYASDESLSSS 78
>gi|147777847|emb|CAN60293.1| hypothetical protein VITISV_023400 [Vitis
vinifera]
Length = 304
Score = 58 bits (138), Expect = 2e-006
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Frame = -3
Query: 870 TRAGKDYQVSGTN-----SEKQERRPRNKERPDRVVWTP-RRSDGSSISEDQLSSSIA-- 715
T +D +V G + SEKQ++R RNK+RPDR VWTP RRSDGS S++ LSSS +
Sbjct: 111 TNGAQDDKVVGNDVHSFVSEKQDKRTRNKDRPDRGVWTPLRRSDGSHASDESLSSSASQP 170
Query: 714 NNGEVKERMLLQRSGEVVNSSGGHSLENGSTRHSGRRVGARNRKEEG 574
+ + E + ++ N+ G GS R + + K G
Sbjct: 171 TSSDFPEGSHGEMRSDMSNARSGEVKALGSGRGGHSALDNGSHKHSG 217
>gi|297739512|emb|CBI29694.3| unnamed protein product [Vitis vinifera]
Length = 519
Score = 58 bits (138), Expect = 2e-006
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Frame = -3
Query: 870 TRAGKDYQVSGTN-----SEKQERRPRNKERPDRVVWTP-RRSDGSSISEDQLSSSIA-- 715
T +D +V G + SEKQ++R RNK+RPDR VWTP RRSDGS S++ LSSS +
Sbjct: 366 TNGAQDDKVVGNDVHSFVSEKQDKRTRNKDRPDRGVWTPLRRSDGSHASDESLSSSASQP 425
Query: 714 NNGEVKERMLLQRSGEVVNSSGGHSLENGSTRHSGRRVGARNRKEEG 574
+ + E + ++ N+ G GS R + + K G
Sbjct: 426 TSSDFPEGSHGEMRSDMSNARSGEVKALGSGRGGHSALDNGSHKHSG 472
>gi|225465189|ref|XP_002264276.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 576
Score = 58 bits (138), Expect = 2e-006
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Frame = -3
Query: 870 TRAGKDYQVSGTN-----SEKQERRPRNKERPDRVVWTP-RRSDGSSISEDQLSSSIA-- 715
T +D +V G + SEKQ++R RNK+RPDR VWTP RRSDGS S++ LSSS +
Sbjct: 423 TNGAQDDKVVGNDVHSFVSEKQDKRTRNKDRPDRGVWTPLRRSDGSHASDESLSSSASQP 482
Query: 714 NNGEVKERMLLQRSGEVVNSSGGHSLENGSTRHSGRRVGARNRKEEG 574
+ + E + ++ N+ G GS R + + K G
Sbjct: 483 TSSDFPEGSHGEMRSDMSNARSGEVKALGSGRGGHSALDNGSHKHSG 529
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,500,728,130,124
Number of Sequences: 15229318
Number of Extensions: 4500728130124
Number of Successful Extensions: 1061091763
Number of sequences better than 0.0: 0
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