BLASTX 7.6.2
Query= UN40952 /QuerySize=1086
(1085 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G52200.1 | Symbols: | unknown protein | chr5:... 120 2e-027
TAIR9_protein||AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 93 2e-019
TAIR9_protein||AT2G17560.2 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 93 2e-019
TAIR9_protein||AT2G17560.3 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 93 2e-019
TAIR9_protein||AT4G35570.1 | Symbols: HMGB5, NFD5, HMGD, NFD05 |... 77 2e-014
TAIR9_protein||AT3G51880.1 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 64 2e-010
TAIR9_protein||AT3G51880.2 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 64 2e-010
TAIR9_protein||AT3G51880.3 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 64 2e-010
TAIR9_protein||AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 63 3e-010
TAIR9_protein||AT1G20696.1 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 60 2e-009
TAIR9_protein||AT1G20696.3 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 60 2e-009
TAIR9_protein||AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 57 1e-008
TAIR9_protein||AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 57 1e-008
>TAIR9_protein||AT5G52200.1 | Symbols: | unknown protein |
chr5:21202818-21204719 REVERSE
Length = 192
Score = 120 bits (300), Expect = 2e-027
Identities = 74/128 (57%), Positives = 88/128 (68%), Gaps = 4/128 (3%)
Frame = +1
Query: 502 DMQRAAELRIVLNQPAAALSSRHTNLGSGSGGWSSS-*EKDEVDPMDQDDEDGDGEKNAR 678
DMQRA ELR VLN AAA SSR+++ GSG GGWSSS E++E DPMDQD+E KN R
Sbjct: 59 DMQRAEELRNVLND-AAASSSRNSSQGSGGGGWSSSDEEEEEADPMDQDEEGSGSGKNER 117
Query: 679 FNEHRRVHYNEFW*VKELRSSG*QSRSM*KKRKKMMAKGSKSEATTSRHTTKDVNK*LNA 858
FN HR+ HY+EF VKELRSSG S ++ + AKGSKSE TT+ TK NK L+A
Sbjct: 118 FNAHRKAHYDEFRKVKELRSSG--SFYEEEEEEDDGAKGSKSETTTNSRHTKGGNKELDA 175
Query: 859 TTRVSSSS 882
T VS +S
Sbjct: 176 TKTVSGTS 183
>TAIR9_protein||AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 139
Score = 93 bits (230), Expect = 2e-019
Identities = 47/64 (73%), Positives = 52/64 (81%), Gaps = 1/64 (1%)
Frame = +2
Query: 92 GETKFEATSTNQRLKTRGRKKKTKTTTKDPNKPKRPPSAFFVFLDDFRREFNEVNPNTKL 271
GE+K EATST+QRLKTRGR K K T KDPN+PKRPPSAFFVFL+DFR+EFN NPN K
Sbjct: 4 GESKAEATSTDQRLKTRGR-KAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKS 62
Query: 272 VRLV 283
V V
Sbjct: 63 VATV 66
Score = 68 bits (164), Expect = 1e-011
Identities = 28/42 (66%), Positives = 38/42 (90%)
Frame = +1
Query: 268 VGKAGGAKWESMTEEEKAPYASKAEGRKSEYAKSMQQYNMKL 393
VGKA GA+W++MT+E+KAPY +KAE RK+EY K++QQYN+KL
Sbjct: 66 VGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKL 107
>TAIR9_protein||AT2G17560.2 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 139
Score = 93 bits (230), Expect = 2e-019
Identities = 47/64 (73%), Positives = 52/64 (81%), Gaps = 1/64 (1%)
Frame = +2
Query: 92 GETKFEATSTNQRLKTRGRKKKTKTTTKDPNKPKRPPSAFFVFLDDFRREFNEVNPNTKL 271
GE+K EATST+QRLKTRGR K K T KDPN+PKRPPSAFFVFL+DFR+EFN NPN K
Sbjct: 4 GESKAEATSTDQRLKTRGR-KAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKS 62
Query: 272 VRLV 283
V V
Sbjct: 63 VATV 66
Score = 68 bits (164), Expect = 1e-011
Identities = 28/42 (66%), Positives = 38/42 (90%)
Frame = +1
Query: 268 VGKAGGAKWESMTEEEKAPYASKAEGRKSEYAKSMQQYNMKL 393
VGKA GA+W++MT+E+KAPY +KAE RK+EY K++QQYN+KL
Sbjct: 66 VGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKL 107
>TAIR9_protein||AT2G17560.3 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 135
Score = 93 bits (230), Expect = 2e-019
Identities = 47/64 (73%), Positives = 52/64 (81%), Gaps = 1/64 (1%)
Frame = +2
Query: 92 GETKFEATSTNQRLKTRGRKKKTKTTTKDPNKPKRPPSAFFVFLDDFRREFNEVNPNTKL 271
GE+K EATST+QRLKTRGR K K T KDPN+PKRPPSAFFVFL+DFR+EFN NPN K
Sbjct: 4 GESKAEATSTDQRLKTRGR-KAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKS 62
Query: 272 VRLV 283
V V
Sbjct: 63 VATV 66
Score = 68 bits (164), Expect = 1e-011
Identities = 28/42 (66%), Positives = 38/42 (90%)
Frame = +1
Query: 268 VGKAGGAKWESMTEEEKAPYASKAEGRKSEYAKSMQQYNMKL 393
VGKA GA+W++MT+E+KAPY +KAE RK+EY K++QQYN+KL
Sbjct: 66 VGKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKL 107
>TAIR9_protein||AT4G35570.1 | Symbols: HMGB5, NFD5, HMGD, NFD05 | HMGB5 (HIGH
MOBILITY GROUP B 5); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor |
chr4:16887363-16888184 REVERSE
Length = 126
Score = 77 bits (187), Expect = 2e-014
Identities = 37/60 (61%), Positives = 45/60 (75%), Gaps = 2/60 (3%)
Frame = +2
Query: 95 ETKFEATSTNQRLKTRGRKKKTKTTTKDPNKPKRPPSAFFVFLDDFRREFNEVNPNTKLV 274
+T+ E+ ST+ RLK RG K K TKDPN+PK+PPS FFVFLDDFR+EFN NP+ K V
Sbjct: 5 QTEVESRSTDDRLKVRGNKVGKK--TKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSV 62
Score = 62 bits (150), Expect = 4e-010
Identities = 25/42 (59%), Positives = 37/42 (88%)
Frame = +1
Query: 268 VGKAGGAKWESMTEEEKAPYASKAEGRKSEYAKSMQQYNMKL 393
VG+A G KW++MTEEE+AP+ +K++ +K+EYA +MQQYNM+L
Sbjct: 65 VGRAAGKKWKTMTEEERAPFVAKSQSKKTEYAVTMQQYNMEL 106
>TAIR9_protein||AT3G51880.1 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 179
Score = 64 bits (153), Expect = 2e-010
Identities = 31/55 (56%), Positives = 35/55 (63%)
Frame = +2
Query: 137 TRGRKKKTKTTTKDPNKPKRPPSAFFVFLDDFRREFNEVNPNTKLVRLVELNGSQ 301
T+ +K K KDPNKPKR PSAFFVFL+DFR F + NPN K V V G Q
Sbjct: 36 TKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQ 90
Score = 58 bits (138), Expect = 1e-008
Identities = 26/42 (61%), Positives = 30/42 (71%)
Frame = +1
Query: 268 VGKAGGAKWESMTEEEKAPYASKAEGRKSEYAKSMQQYNMKL 393
VGKAGG KW+SM++ EKAPY KA RK+EY K M YN L
Sbjct: 84 VGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNL 125
>TAIR9_protein||AT3G51880.2 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 186
Score = 64 bits (153), Expect = 2e-010
Identities = 31/55 (56%), Positives = 35/55 (63%)
Frame = +2
Query: 137 TRGRKKKTKTTTKDPNKPKRPPSAFFVFLDDFRREFNEVNPNTKLVRLVELNGSQ 301
T+ +K K KDPNKPKR PSAFFVFL+DFR F + NPN K V V G Q
Sbjct: 36 TKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQ 90
Score = 58 bits (138), Expect = 1e-008
Identities = 26/42 (61%), Positives = 30/42 (71%)
Frame = +1
Query: 268 VGKAGGAKWESMTEEEKAPYASKAEGRKSEYAKSMQQYNMKL 393
VGKAGG KW+SM++ EKAPY KA RK+EY K M YN L
Sbjct: 84 VGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNL 125
>TAIR9_protein||AT3G51880.3 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 179
Score = 64 bits (153), Expect = 2e-010
Identities = 31/55 (56%), Positives = 35/55 (63%)
Frame = +2
Query: 137 TRGRKKKTKTTTKDPNKPKRPPSAFFVFLDDFRREFNEVNPNTKLVRLVELNGSQ 301
T+ +K K KDPNKPKR PSAFFVFL+DFR F + NPN K V V G Q
Sbjct: 36 TKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQ 90
Score = 58 bits (138), Expect = 1e-008
Identities = 26/42 (61%), Positives = 30/42 (71%)
Frame = +1
Query: 268 VGKAGGAKWESMTEEEKAPYASKAEGRKSEYAKSMQQYNMKL 393
VGKAGG KW+SM++ EKAPY KA RK+EY K M YN L
Sbjct: 84 VGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNL 125
>TAIR9_protein||AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181193 FORWARD
Length = 148
Score = 63 bits (151), Expect = 3e-010
Identities = 27/44 (61%), Positives = 36/44 (81%)
Frame = +1
Query: 268 VGKAGGAKWESMTEEEKAPYASKAEGRKSEYAKSMQQYNMKLVL 399
VGKAGG KW+S+++ EKAPY +KA+ RK EY K+M+ YN KLV+
Sbjct: 66 VGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLVI 109
>TAIR9_protein||AT1G20696.1 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181174 FORWARD
Length = 142
Score = 60 bits (145), Expect = 2e-009
Identities = 26/42 (61%), Positives = 34/42 (80%)
Frame = +1
Query: 268 VGKAGGAKWESMTEEEKAPYASKAEGRKSEYAKSMQQYNMKL 393
VGKAGG KW+S+++ EKAPY +KA+ RK EY K+M+ YN KL
Sbjct: 66 VGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKL 107
>TAIR9_protein||AT1G20696.3 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181170 FORWARD
Length = 141
Score = 60 bits (145), Expect = 2e-009
Identities = 26/42 (61%), Positives = 34/42 (80%)
Frame = +1
Query: 268 VGKAGGAKWESMTEEEKAPYASKAEGRKSEYAKSMQQYNMKL 393
VGKAGG KW+S+++ EKAPY +KA+ RK EY K+M+ YN KL
Sbjct: 66 VGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKL 107
>TAIR9_protein||AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 145
Score = 57 bits (137), Expect = 1e-008
Identities = 25/42 (59%), Positives = 33/42 (78%)
Frame = +1
Query: 268 VGKAGGAKWESMTEEEKAPYASKAEGRKSEYAKSMQQYNMKL 393
VGKA G KW+S+++ EKAPY +KAE RK EY K+++ YN KL
Sbjct: 69 VGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKL 110
>TAIR9_protein||AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 143
Score = 57 bits (137), Expect = 1e-008
Identities = 25/42 (59%), Positives = 33/42 (78%)
Frame = +1
Query: 268 VGKAGGAKWESMTEEEKAPYASKAEGRKSEYAKSMQQYNMKL 393
VGKA G KW+S+++ EKAPY +KAE RK EY K+++ YN KL
Sbjct: 69 VGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKL 110
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,337,905,103
Number of Sequences: 33410
Number of Extensions: 20337905103
Number of Successful Extensions: 647909322
Number of sequences better than 0.0: 0
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