BLASTX 7.6.2
Query= UN40986 /QuerySize=1084
(1083 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|297831128|ref|XP_002883446.1| predicted protein [Arabidopsis ... 134 3e-029
gi|297810421|ref|XP_002873094.1| predicted protein [Arabidopsis ... 120 5e-025
gi|297851804|ref|XP_002893783.1| predicted protein [Arabidopsis ... 115 2e-023
gi|9759064|dbj|BAB09542.1| unnamed protein product [Arabidopsis ... 103 7e-020
gi|79537384|ref|NP_200181.2| RNA-binding (RRM/RBD/RNP motifs) fa... 103 7e-020
gi|145334285|ref|NP_001078524.1| RNA-binding (RRM/RBD/RNP motifs... 102 1e-019
gi|52354551|gb|AAU44596.1| hypothetical protein AT5G53700 [Arabi... 102 1e-019
gi|297806309|ref|XP_002871038.1| predicted protein [Arabidopsis ... 101 3e-019
gi|297792673|ref|XP_002864221.1| predicted protein [Arabidopsis ... 97 4e-018
gi|297810423|ref|XP_002873095.1| predicted protein [Arabidopsis ... 80 4e-013
gi|297849788|ref|XP_002892775.1| predicted protein [Arabidopsis ... 78 2e-012
gi|297810419|ref|XP_002873093.1| predicted protein [Arabidopsis ... 77 3e-012
gi|5923685|gb|AAD56336.1|AC009326_23 hypothetical protein [Arabi... 76 1e-011
gi|334185184|ref|NP_187528.2| RNA recognition motif-containing p... 76 1e-011
gi|15242768|ref|NP_195968.1| RNA-binding (RRM/RBD/RNP motifs) fa... 74 5e-011
gi|297788920|ref|XP_002862489.1| predicted protein [Arabidopsis ... 70 5e-010
gi|297810599|ref|XP_002873183.1| predicted protein [Arabidopsis ... 68 3e-009
gi|15222009|ref|NP_175322.1| nucleolin [Arabidopsis thaliana] 63 9e-008
gi|7770338|gb|AAF69708.1|AC016041_13 F27J15.29 [Arabidopsis thal... 63 9e-008
>gi|297831128|ref|XP_002883446.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 319
Score = 134 bits (336), Expect = 3e-029
Identities = 95/269 (35%), Positives = 142/269 (52%), Gaps = 18/269 (6%)
Frame = +1
Query: 67 DESGNKGMELNCRDAKIRKSSISRISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPV 246
D+SG+ + + D++ + S + +SVEGYDT LR+ + L +HFASCG I ++YVP
Sbjct: 23 DDSGDDSGDDSGADSQTPRISSTTVSVEGYDTWLRKYPLKLVLEKHFASCGEITNIYVPT 82
Query: 247 PLDVDVNGVILCRYSLIYVNEEDEEKALKLDGSDMGGRILQINPYPFHENHLDD--YLAP 420
+ G++ + E EEKAL+L G+D+GG + P P+ + +DD Y P
Sbjct: 83 DFE---RGILKSVAFMRIEGEGAEEKALQLSGTDIGGWTAIVKPAPWQKVFMDDPRYAGP 139
Query: 421 -MKEGEFFLPQHTIMVKDFESSLPIDVIMEQLDKYFSSKGSFVYQDVTASGAIKTVARFY 597
H I + +++SLP + L K+FSS GS V SGA A Y
Sbjct: 140 RCAAAPADTKTHMIRITGYDTSLPKIDMQIALYKHFSSCGSIWKVIVLKSGA----AFIY 195
Query: 598 VRGQEGVDTALERSGRSVEGLYFVVTRVVPVP---AKIRP-----TGYCHPNNFIEDPNI 753
+ G+ VD ALE SGR++ G VV VVP P K RP TGY P+ +E
Sbjct: 196 LEGERCVDKALELSGRNMGGSTLVVEPVVPRPDILKKRRPLACTTTGYTLPSTLLEVAKK 255
Query: 754 AEKRSQKKKKKKSKTTERNQSKKKEKKRK 840
+K +K+K+K K E+ + K+KEK+++
Sbjct: 256 KKKMETEKEKEKEKEKEKEKGKEKEKEKE 284
>gi|297810421|ref|XP_002873094.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 120 bits (300), Expect = 5e-025
Identities = 96/265 (36%), Positives = 130/265 (49%), Gaps = 32/265 (12%)
Frame = +1
Query: 64 MDESGNKGMELNCRDAKIRKSSISRISVEGYDTSLRRADVDGALREHFASCGNIIHVYVP 243
+++SG+ E NC + + ISVEGYDT LR+ + L +HFASCG I ++YVP
Sbjct: 14 LNDSGSDSGESNCCSC-----TSTTISVEGYDTWLRKYPLKLVLEKHFASCGEITNIYVP 68
Query: 244 VPLDVDVNGVILCRYSLIYVNEEDEEKALKLDGSDMGGRILQINPYPFHENHLDD--YLA 417
+ G++ + E EEKAL+L G+D+GG + P P + +DD Y
Sbjct: 69 TDFE---RGILKSVAFMRIEGEGAEEKALQLSGTDVGGWTAIVKPAPSQKVFMDDPWYAG 125
Query: 418 P-MKEGEFFLPQHTIMVKDFESSLPIDVIMEQLDKYFSSKGSFVYQDVTASGAIKTVARF 594
P H I V +++SLP + L K+FSS GS V +SGA A
Sbjct: 126 PRCAAAPADTKTHMIRVTGYDTSLPKIDMQIALYKHFSSCGSIWKVIVLSSGA----AFI 181
Query: 595 YVRGQEGVDTALERSGRSVEGLYFVVTRVVPVP---AKIRP-----TGYCHPNNFIEDPN 750
Y+ G+ VD ALE SGR++ G VV VVP P K RP TGY P+ +E
Sbjct: 182 YLEGERCVDKALELSGRNMGGSTLVVEPVVPRPDILKKRRPLACTTTGYTLPSTLLE--- 238
Query: 751 IAEKRSQKKKKKKSKTTERNQSKKK 825
KKKKK TE K+K
Sbjct: 239 ------VAKKKKKKMETEMEMEKEK 257
>gi|297851804|ref|XP_002893783.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 276
Score = 115 bits (286), Expect = 2e-023
Identities = 84/225 (37%), Positives = 119/225 (52%), Gaps = 12/225 (5%)
Frame = +1
Query: 124 SSISRISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPVPLDVDVNGVILCRYSLIYV 303
+S SRI VEGYDTSL D+ ALR+HF+SCG I H+YVP D IL ++ I++
Sbjct: 56 TSFSRICVEGYDTSLHEYDLKLALRKHFSSCGEITHIYVP----RDFERNILKSFAFIHI 111
Query: 304 -NEEDEEKALKLDGSDMGGRILQINPYPFHENHLDDYLAPMKEGEFFLPQHTIMVKDFES 480
E EEKAL L GSD GG + P+ ++D A + F LPQ ++V +++
Sbjct: 112 AGEGAEEKALALSGSDAGGWNVFAKSSPYDGQYVDPGRATAESPRFSLPQRKMIVTGYDT 171
Query: 481 SLPIDVIMEQLDKYFSSKGSF--VYQDVTASGAIKTVARFYVRGQEGVDTALERSGRSVE 654
SLP I +L +FSS G V A+G + + A + G V+ ALE G V
Sbjct: 172 SLPEIDIQIRLSNHFSSCGEITNVMIPKDANGGLDSTALISILGAGSVEKALELGGCDVG 231
Query: 655 GLYF-VVTRVVPVPAKIRPTGYCHPNNFIEDPNIAEKRSQKKKKK 786
G VVT + P+ IR YC ++ + P ++ ++ KKKK
Sbjct: 232 GWNIAVVTVLPPLGTTIR---YCSSSS-LSSPIKSKMTTRTKKKK 272
>gi|9759064|dbj|BAB09542.1| unnamed protein product [Arabidopsis thaliana]
Length = 248
Score = 103 bits (255), Expect = 7e-020
Identities = 83/245 (33%), Positives = 129/245 (52%), Gaps = 23/245 (9%)
Frame = +1
Query: 121 KSSISRISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPVPLDVDVNGVILCRYSLIY 300
+ S S+ISVEGYDTS+ + AL +HFASCG I+ + VP ++ +I+
Sbjct: 14 EQSFSKISVEGYDTSVHEFPLKLALAKHFASCGKIVDIDVPRDFK---KRILKSPLFIIF 70
Query: 301 VNEEDE---EKALKLDGSDMGGRILQINPYPFHENHLDDYLAPMKEGEFFLPQHTIMVKD 471
+E E +KAL+L G+D+GG + + P + + D +GE T++VK
Sbjct: 71 HAKEGESPVDKALELSGTDVGGWNVVVKSLPGQQMYRDPGGVDRFKGE-----RTLIVKV 125
Query: 472 FESSLPIDVIMEQ--LDKYFSSKGSFVYQDVTASGAI---KTVARFYVRGQEGVDTALER 636
+++ + I Q L K+FSS G V G + ++ AR + G+ VD ALE
Sbjct: 126 YDTPSTLSKIDLQIGLCKHFSSCGEVTGISVLVHGNLCCHESKARVDIMGKGCVDKALEL 185
Query: 637 SGRSVEGLYFVVTRVVPVPA--KIRPTGYCHPNNFIEDPNIAEKRSQKKKKKKSKTTERN 810
SGR+ +G VV VVP PA K++PTG HP +E K+++ KKK K + ++
Sbjct: 186 SGRTADGWKIVVYFVVP-PAGRKLKPTGSGHPTIGVE----RMKKAELKKKAKMEMMDKG 240
Query: 811 QSKKK 825
+ K+K
Sbjct: 241 KKKRK 245
>gi|79537384|ref|NP_200181.2| RNA-binding (RRM/RBD/RNP motifs) family protein
[Arabidopsis thaliana]
Length = 251
Score = 103 bits (255), Expect = 7e-020
Identities = 86/254 (33%), Positives = 132/254 (51%), Gaps = 24/254 (9%)
Frame = +1
Query: 94 LNCRDAKIRKSSISRISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPVPLDVDVNGV 273
L +D RK S+ISVEGYDTS+ + AL +HFASCG I+ + VP +
Sbjct: 9 LESKDTNNRK-CFSKISVEGYDTSVHEFPLKLALAKHFASCGKIVDIDVPRDFK---KRI 64
Query: 274 ILCRYSLIYVNEEDE---EKALKLDGSDMGGRILQINPYPFHENHLDDYLAPMKEGEFFL 444
+ +I+ +E E +KAL+L G+D+GG + + P + + D +GE
Sbjct: 65 LKSPLFIIFHAKEGESPVDKALELSGTDVGGWNVVVKSLPGQQMYRDPGGVDRFKGE--- 121
Query: 445 PQHTIMVKDFESSLPIDVIMEQ--LDKYFSSKGSFVYQDVTASGAI---KTVARFYVRGQ 609
T++VK +++ + I Q L K+FSS G V G + ++ AR + G+
Sbjct: 122 --RTLIVKVYDTPSTLSKIDLQIGLCKHFSSCGEVTGISVLVHGNLCCHESKARVDIMGK 179
Query: 610 EGVDTALERSGRSVEGLYFVVTRVVPVPA--KIRPTGYCHPNNFIEDPNIAEKRSQKKKK 783
VD ALE SGR+ +G VV VVP PA K++PTG HP +E K+++ KKK
Sbjct: 180 GCVDKALELSGRTADGWKIVVYFVVP-PAGRKLKPTGSGHPTIGVE----RMKKAELKKK 234
Query: 784 KKSKTTERNQSKKK 825
K + ++ + K+K
Sbjct: 235 AKMEMMDKGKKKRK 248
>gi|145334285|ref|NP_001078524.1| RNA-binding (RRM/RBD/RNP motifs) family
protein [Arabidopsis thaliana]
Length = 226
Score = 102 bits (254), Expect = 1e-019
Identities = 76/219 (34%), Positives = 110/219 (50%), Gaps = 16/219 (7%)
Frame = +1
Query: 64 MDESGNKGM---ELNCRDAKIRKSSI--SRISVEGYDTSLRRADVDGALREHFASCGNII 228
MDES KGM +LN A RK I ++ISVEGYDT LR V L +HFASCG I
Sbjct: 1 MDESAIKGMKLLQLNEIGANSRKPRIPWTKISVEGYDTRLREYTVKLVLEKHFASCGKIT 60
Query: 229 HVYVPVPLDVDVNGVILCRYSLIYVNEEDEEKALKLDGSDMGGRILQINPYPFHENHLDD 408
H+YVP + G++ + E EEKAL L G+D GG + P + + +D
Sbjct: 61 HIYVPRDFE---RGILKSVAFMCIKGEGGEEKALLLSGTDAGGWTAIVKPALWQKEIMDP 117
Query: 409 YLAPMKEGEFFLPQHTIMVKDFESSLPIDVIMEQLDKYFSSKGSFVYQDVTASGAIKTVA 588
+L M + L H + V +++ +P I L ++FSS G V SG+
Sbjct: 118 WLPGMPK----LETHRVRVTGYDTCVPKIDIQMALCEHFSSCGEVTQVVVLPSGS----G 169
Query: 589 RFYVRGQEGVDTALERSGRSVEGLYFVVTRVVPVPAKIR 705
Y++G+ D AL+ +G + G+ VV V+ P ++
Sbjct: 170 SIYLQGERCEDKALQLNGCKMGGMNLVVESVLIEPEDLK 208
>gi|52354551|gb|AAU44596.1| hypothetical protein AT5G53700 [Arabidopsis
thaliana]
Length = 251
Score = 102 bits (254), Expect = 1e-019
Identities = 86/254 (33%), Positives = 131/254 (51%), Gaps = 24/254 (9%)
Frame = +1
Query: 94 LNCRDAKIRKSSISRISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPVPLDVDVNGV 273
L +D RK S+ISVEGYDTS+ + AL +HFASCG I+ + VP +
Sbjct: 9 LESKDTNNRK-CFSKISVEGYDTSVHEFPLKLALAKHFASCGKIVDIDVPRDFK---KRI 64
Query: 274 ILCRYSLIYVNEEDE---EKALKLDGSDMGGRILQINPYPFHENHLDDYLAPMKEGEFFL 444
+ +I+ +E E +KAL+L G+D+GG + + P + + D +GE
Sbjct: 65 LKSPLFIIFHAKEGESPVDKALELSGTDVGGWNVVVKSLPGQQMYRDPGGVDRFKGE--- 121
Query: 445 PQHTIMVKDFESSLPIDVIMEQ--LDKYFSSKGSFVYQDVTASGAI---KTVARFYVRGQ 609
T++VK +++ + I Q L K+FSS G V G + ++ AR + G+
Sbjct: 122 --RTLIVKVYDTPSTLSKIDLQIGLCKHFSSCGEVTGISVLVHGNLCCHESKARVDIMGK 179
Query: 610 EGVDTALERSGRSVEGLYFVVTRVVPVPA--KIRPTGYCHPNNFIEDPNIAEKRSQKKKK 783
VD ALE SGR+ +G VV VVP PA K++PTG HP +E K+ + KKK
Sbjct: 180 GCVDKALELSGRTADGWKIVVYFVVP-PAGRKLKPTGSGHPTIGVE----RMKKXELKKK 234
Query: 784 KKSKTTERNQSKKK 825
K + ++ + K+K
Sbjct: 235 AKMEMMDKGKKKRK 248
>gi|297806309|ref|XP_002871038.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 248
Score = 101 bits (250), Expect = 3e-019
Identities = 81/232 (34%), Positives = 117/232 (50%), Gaps = 18/232 (7%)
Frame = +1
Query: 67 DESGNKGMELNCRDAKIRKSSISRISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPV 246
D+SG+ + + D++ + S + +SVEGYDT LR+ + L +HFASCG I ++YVP
Sbjct: 23 DDSGDDSGDDSGADSQTPRISSTTVSVEGYDTWLRKYPLKLVLEKHFASCGEITNIYVPT 82
Query: 247 PLDVDVNGVILCRYSLIYVNEEDEEKALKLDGSDMGGRILQINPYPFHENHLDD--YLAP 420
+ G++ + E EEKAL+L G+D+GG + P P + +DD Y P
Sbjct: 83 DFE---RGILKSVAFMRIEGEGAEEKALQLSGTDVGGWTAIVKPAPSQKVFMDDPWYAGP 139
Query: 421 -MKEGEFFLPQHTIMVKDFESSLPIDVIMEQLDKYFSSKGSFVYQDVTASGAIKTVARFY 597
H I V +++SLP + L K+FSS G V +SGA A
Sbjct: 140 RCAAAPADTKTHRIRVTGYDTSLPEIDMQIALCKHFSSCGYVSKVIVLSSGA----AFLC 195
Query: 598 VRGQEGVDTALERSGRSVEGLYFVVTRVVPVP---AKIRP-----TGYCHPN 729
++G+ VD ALE S ++ G VV VVP P K RP TGY P+
Sbjct: 196 LKGERCVDKALELSRCNMGGRTLVVEPVVPRPDILKKRRPLACTTTGYTLPS 247
>gi|297792673|ref|XP_002864221.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 240
Score = 97 bits (240), Expect = 4e-018
Identities = 81/241 (33%), Positives = 118/241 (48%), Gaps = 16/241 (6%)
Frame = +1
Query: 82 KGMELNCRDAKIRKSSISRISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPVPLDVD 261
+ +ELNCR SIS ISVEGYDTSL + ALR+HFASCG I ++VP
Sbjct: 10 ESLELNCR------KSISTISVEGYDTSLHGYPLKLALRKHFASCGKIASMFVPRDFK-- 61
Query: 262 VNGVILCRYSLIYVNEEDEEKALKLDGSDMGGRILQINPYPFHENHLDDYLAPMKEGEFF 441
G++ + + E +KAL+L GSD+G + + P E++ D GE
Sbjct: 62 -RGILKSPLFIDFWGEGARDKALELSGSDVGRWNVVVKAVPRQEDYYDPAGFNFFRGERE 120
Query: 442 LPQHTIMVKDFESSLPIDVIMEQLDKYFSSKGSFVYQDVTASGAI--KTVARFYVRGQEG 615
L + V D SS+ + L K+FSS G V G + + G+
Sbjct: 121 L---VVKVYDLPSSVRKIDVQIGLCKHFSSCGEVTCVTVLVHGIFVHQRNTIISIMGEGC 177
Query: 616 VDTALERSGR-SVEGLYFVVTRVVPVPA-KIRPTGYCHPNNFIEDPNIAEKRSQKKKKKK 789
V+ A + SG+ + +G VV VVP+ A K +PTG HP+ +E A+ ++K K K
Sbjct: 178 VEKAQQLSGQCNTDGWNIVVDSVVPLSADKRKPTGCEHPSIVLERIKKAKMEKERKMKNK 237
Query: 790 S 792
+
Sbjct: 238 T 238
>gi|297810423|ref|XP_002873095.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 227
Score = 80 bits (197), Expect = 4e-013
Identities = 52/124 (41%), Positives = 70/124 (56%), Gaps = 8/124 (6%)
Frame = +1
Query: 64 MDESGNKG---MELNCRDAKIRKSSISRISVEGYDTSLRRADVDGALREHFASCGNIIHV 234
MDES KG +ELN A RK + ISVEGYDT LR + AL +HFASCG I +
Sbjct: 1 MDESAIKGLKLLELNDSGAVSRKPRKTTISVEGYDTRLREYTLKLALEKHFASCGKITTI 60
Query: 235 YVPVPLDVDVNGVILCRYSLIYVNEED-EEKALKLDGSDMGGRILQINPYPFHENHLDDY 411
YVP D IL + +++ +D EEKAL+L G+D+GG + P P ++ +D +
Sbjct: 61 YVP----RDYKRGILKSVTFMWIKGDDAEEKALQLSGTDVGGWTALVKPAPSQKDIMDPW 116
Query: 412 LAPM 423
M
Sbjct: 117 CPAM 120
>gi|297849788|ref|XP_002892775.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 216
Score = 78 bits (191), Expect = 2e-012
Identities = 55/140 (39%), Positives = 79/140 (56%), Gaps = 6/140 (4%)
Frame = +1
Query: 124 SSISRISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPVPLDVDVNGVI-LCRYSLIY 300
S++ RISVEGYDTS+ D+ ALR+HF+SCG + +V VP V G++ C Y I
Sbjct: 12 STVCRISVEGYDTSVHAYDLKLALRKHFSSCGEVKNVNVPKDF---VRGILKRCAYICI- 67
Query: 301 VNEEDEEKALKLDGSDMGGRILQINPYPFH-ENHLDDYLAPMKEGEFFLPQHTIMVKDFE 477
V E EKAL+L GSD+ G + + PFH +D A + ++ +MV ++
Sbjct: 68 VGEGALEKALQLSGSDVRGWTISVKASPFHIPMCIDPGRALVAVAYLSRQEYRMMVTGYD 127
Query: 478 SSLPIDVIMEQLDKYFSSKG 537
+SLP I L K+FS+ G
Sbjct: 128 TSLPELDIQIGLCKHFSTCG 147
>gi|297810419|ref|XP_002873093.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 161
Score = 77 bits (189), Expect = 3e-012
Identities = 47/121 (38%), Positives = 71/121 (58%), Gaps = 10/121 (8%)
Frame = +1
Query: 64 MDESGNKGMEL-----NCRDAKIRKSSISRISVEGYDTSLRRADVDGALREHFASCGNII 228
M+ES KG++L + D++ S+ + ISVEGY+T+L+ + AL +HFASCG I
Sbjct: 1 MEESAIKGLKLLEFNDSGADSQTHSSTSTAISVEGYNTTLKEYPLRLALAKHFASCGKIT 60
Query: 229 HVYVPVPLDVDVNGVILCRYSLIYVNEED-EEKALKLDGSDMGGRILQINPYPFHENHLD 405
+YVP D +L R S +++ +D EEKAL+L G+D+GG + P P + D
Sbjct: 61 QIYVP----RDFKKKLLKRASFVWIEGDDAEEKALQLSGTDVGGWTAIVKPVPSQKIFYD 116
Query: 406 D 408
D
Sbjct: 117 D 117
>gi|5923685|gb|AAD56336.1|AC009326_23 hypothetical protein [Arabidopsis
thaliana]
Length = 198
Score = 76 bits (185), Expect = 1e-011
Identities = 47/114 (41%), Positives = 67/114 (58%), Gaps = 9/114 (7%)
Frame = +1
Query: 67 DESGNKGMELNCRDAKIRKSSISRISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPV 246
DE NKG+E+ R KIR S I RISV GYD L R V+ L++ F+ CG I V++P
Sbjct: 2 DEIANKGLEVK-RSRKIRDSDIERISVTGYDIELPREHVESELKKLFSPCGEITDVHIP- 59
Query: 247 PLDVDVNGVILCRYSLIY-VNEEDEEKALKLDGSDMGGRIL--QINPYPFHENH 399
+ L ++ IY V E +KAL+L+GSDMGG + + +P+P E++
Sbjct: 60 ----ETRNSSLWSHAFIYFVGEGTADKALQLNGSDMGGWTVDAEADPFPKEEDN 109
>gi|334185184|ref|NP_187528.2| RNA recognition motif-containing protein
[Arabidopsis thaliana]
Length = 132
Score = 76 bits (185), Expect = 1e-011
Identities = 47/114 (41%), Positives = 67/114 (58%), Gaps = 9/114 (7%)
Frame = +1
Query: 67 DESGNKGMELNCRDAKIRKSSISRISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPV 246
DE NKG+E+ R KIR S I RISV GYD L R V+ L++ F+ CG I V++P
Sbjct: 2 DEIANKGLEVK-RSRKIRDSDIERISVTGYDIELPREHVESELKKLFSPCGEITDVHIP- 59
Query: 247 PLDVDVNGVILCRYSLIY-VNEEDEEKALKLDGSDMGGRIL--QINPYPFHENH 399
+ L ++ IY V E +KAL+L+GSDMGG + + +P+P E++
Sbjct: 60 ----ETRNSSLWSHAFIYFVGEGTADKALQLNGSDMGGWTVDAEADPFPKEEDN 109
>gi|15242768|ref|NP_195968.1| RNA-binding (RRM/RBD/RNP motifs) family protein
[Arabidopsis thaliana]
Length = 321
Score = 74 bits (179), Expect = 5e-011
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 8/105 (7%)
Frame = +1
Query: 82 KGMELNCRDAKIRKSSISRISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPVPLDVD 261
K +ELN D ++S+ + I VEGYDTSL+ + AL +HFASCG I +YVP D
Sbjct: 10 KSLELNDSD---KQSTSTAICVEGYDTSLKEYPLRLALTKHFASCGEITQIYVP----RD 62
Query: 262 VNGVILCRYSLIYVNEED-EEKALKLDGSDMGGRILQINPYPFHE 393
IL S +++ E E+KAL+L G+D+GG + + P P HE
Sbjct: 63 FKKKILKSVSFMWIKGEGAEDKALQLSGTDVGGWTVIVKPKPKHE 107
Score = 72 bits (176), Expect = 1e-010
Identities = 54/150 (36%), Positives = 75/150 (50%), Gaps = 6/150 (4%)
Frame = +1
Query: 124 SSISRISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPVPLDVDVNGVILCRYSLIYV 303
S I+ ISVEGYDTSL++ ++ L +HF SCG I HVYVP + GV+ L
Sbjct: 110 SPITTISVEGYDTSLQKYLLELILEKHFDSCGEIRHVYVPTDYE---RGVLKSVAFLRIE 166
Query: 304 NEEDEEKALKLDGSDMGGRILQINPYPFHENHLDDYLAPMKEGEFFLPQHTIMVKDFESS 483
E E+KAL+L G+D+ G + + P ++ A E H V +++S
Sbjct: 167 GEGAEDKALQLSGTDVVGWTVIVKPSEIFYDNSSRAPATTPEASKI---HRFRVTGYDAS 223
Query: 484 LPIDVIMEQLDKYFSSKGSFVYQDVTASGA 573
LP I L K+FSS G V +S A
Sbjct: 224 LPEIDIQMALCKHFSSCGEIWQVTVLSSTA 253
>gi|297788920|ref|XP_002862489.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 156
Score = 70 bits (170), Expect = 5e-010
Identities = 43/108 (39%), Positives = 60/108 (55%), Gaps = 9/108 (8%)
Frame = +1
Query: 82 KGMELNCRDAKIRKSSISRISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPVPLDVD 261
+ +ELNCR SIS ISVEGYDTSL + ALR+HFASCG I ++VP
Sbjct: 10 ESLELNCR------KSISTISVEGYDTSLHGYPLKLALRKHFASCGKIASMFVPRDFK-- 61
Query: 262 VNGVILCRYSLIYVNEEDEEKALKLDGSDMGGRILQINPYPFHENHLD 405
G++ + + E +KAL+L GSD+G + + P E++ D
Sbjct: 62 -RGILKSPLFIDFWGEGARDKALELSGSDVGRWNVVVKAVPRQEDYYD 108
>gi|297810599|ref|XP_002873183.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 338
Score = 68 bits (164), Expect = 3e-009
Identities = 36/94 (38%), Positives = 51/94 (54%)
Frame = +1
Query: 124 SSISRISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPVPLDVDVNGVILCRYSLIYV 303
S + RI V GYDT L DV AL EHF+SCG I +Y+P+ D + +
Sbjct: 12 SDVGRIKVTGYDTGLPLDDVYTALAEHFSSCGEIWEIYIPLKFDETKTSLNSHGVMCLLG 71
Query: 304 NEEDEEKALKLDGSDMGGRILQINPYPFHENHLD 405
++ EKAL+L GS++GG + + YP+ N D
Sbjct: 72 GQDAVEKALQLTGSNVGGWNVSVEAYPYPANAND 105
>gi|15222009|ref|NP_175322.1| nucleolin [Arabidopsis thaliana]
Length = 557
Score = 63 bits (151), Expect = 9e-008
Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 7/75 (9%)
Frame = +1
Query: 136 RISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPVPLDV-DVNGVILCRYSLIYVNEE 312
+I V+G+D SL D+ LREHF+SCG I +V VP+ D + G+ +S E
Sbjct: 402 KIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFS------E 455
Query: 313 DEEKALKLDGSDMGG 357
+EKAL+L+GSDMGG
Sbjct: 456 GKEKALELNGSDMGG 470
>gi|7770338|gb|AAF69708.1|AC016041_13 F27J15.29 [Arabidopsis thaliana]
Length = 193
Score = 63 bits (151), Expect = 9e-008
Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 7/75 (9%)
Frame = +1
Query: 136 RISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPVPLDV-DVNGVILCRYSLIYVNEE 312
+I V+G+D SL D+ LREHF+SCG I +V VP+ D + G+ +S E
Sbjct: 46 KIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFS------E 99
Query: 313 DEEKALKLDGSDMGG 357
+EKAL+L+GSDMGG
Sbjct: 100 GKEKALELNGSDMGG 114
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,587,916,767,856
Number of Sequences: 15229318
Number of Extensions: 4587916767856
Number of Successful Extensions: 1071853064
Number of sequences better than 0.0: 0
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