BLASTX 7.6.2
Query= UN40986 /QuerySize=1084
(1083 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G53700.1 | Symbols: | INVOLVED IN: biological... 103 3e-022
TAIR9_protein||AT5G03495.1 | Symbols: | nucleotide binding | ch... 102 4e-022
TAIR9_protein||AT3G09160.1 | Symbols: | RNA recognition motif (... 76 4e-014
TAIR9_protein||AT5G03480.1 | Symbols: | nucleic acid binding / ... 74 2e-013
TAIR9_protein||AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1... 63 3e-010
TAIR9_protein||AT5G05430.1 | Symbols: | FUNCTIONS IN: molecular... 49 4e-006
>TAIR9_protein||AT5G53700.1 | Symbols: | INVOLVED IN: biological_process
unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: nucleic acid binding / nucleotide binding
(TAIR:AT5G03480.1); Has 74 Blast hits to 54 proteins in 11 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses
- 0; Other Eukaryotes - 6 (source: NCBI BLink). |
chr5:21801221-21802546 FORWARD
Length = 252
Score = 103 bits (255), Expect = 3e-022
Identities = 86/254 (33%), Positives = 132/254 (51%), Gaps = 24/254 (9%)
Frame = +1
Query: 94 LNCRDAKIRKSSISRISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPVPLDVDVNGV 273
L +D RK S+ISVEGYDTS+ + AL +HFASCG I+ + VP +
Sbjct: 9 LESKDTNNRK-CFSKISVEGYDTSVHEFPLKLALAKHFASCGKIVDIDVPRDFK---KRI 64
Query: 274 ILCRYSLIYVNEEDE---EKALKLDGSDMGGRILQINPYPFHENHLDDYLAPMKEGEFFL 444
+ +I+ +E E +KAL+L G+D+GG + + P + + D +GE
Sbjct: 65 LKSPLFIIFHAKEGESPVDKALELSGTDVGGWNVVVKSLPGQQMYRDPGGVDRFKGE--- 121
Query: 445 PQHTIMVKDFESSLPIDVIMEQ--LDKYFSSKGSFVYQDVTASGAI---KTVARFYVRGQ 609
T++VK +++ + I Q L K+FSS G V G + ++ AR + G+
Sbjct: 122 --RTLIVKVYDTPSTLSKIDLQIGLCKHFSSCGEVTGISVLVHGNLCCHESKARVDIMGK 179
Query: 610 EGVDTALERSGRSVEGLYFVVTRVVPVPA--KIRPTGYCHPNNFIEDPNIAEKRSQKKKK 783
VD ALE SGR+ +G VV VVP PA K++PTG HP +E K+++ KKK
Sbjct: 180 GCVDKALELSGRTADGWKIVVYFVVP-PAGRKLKPTGSGHPTIGVE----RMKKAELKKK 234
Query: 784 KKSKTTERNQSKKK 825
K + ++ + K+K
Sbjct: 235 AKMEMMDKGKKKRK 248
>TAIR9_protein||AT5G03495.1 | Symbols: | nucleotide binding |
chr5:873804-875025 REVERSE
Length = 227
Score = 102 bits (254), Expect = 4e-022
Identities = 76/219 (34%), Positives = 110/219 (50%), Gaps = 16/219 (7%)
Frame = +1
Query: 64 MDESGNKGM---ELNCRDAKIRKSSI--SRISVEGYDTSLRRADVDGALREHFASCGNII 228
MDES KGM +LN A RK I ++ISVEGYDT LR V L +HFASCG I
Sbjct: 1 MDESAIKGMKLLQLNEIGANSRKPRIPWTKISVEGYDTRLREYTVKLVLEKHFASCGKIT 60
Query: 229 HVYVPVPLDVDVNGVILCRYSLIYVNEEDEEKALKLDGSDMGGRILQINPYPFHENHLDD 408
H+YVP + G++ + E EEKAL L G+D GG + P + + +D
Sbjct: 61 HIYVPRDFE---RGILKSVAFMCIKGEGGEEKALLLSGTDAGGWTAIVKPALWQKEIMDP 117
Query: 409 YLAPMKEGEFFLPQHTIMVKDFESSLPIDVIMEQLDKYFSSKGSFVYQDVTASGAIKTVA 588
+L M + L H + V +++ +P I L ++FSS G V SG+
Sbjct: 118 WLPGMPK----LETHRVRVTGYDTCVPKIDIQMALCEHFSSCGEVTQVVVLPSGS----G 169
Query: 589 RFYVRGQEGVDTALERSGRSVEGLYFVVTRVVPVPAKIR 705
Y++G+ D AL+ +G + G+ VV V+ P ++
Sbjct: 170 SIYLQGERCEDKALQLNGCKMGGMNLVVESVLIEPEDLK 208
>TAIR9_protein||AT3G09160.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:2805779-2806912 REVERSE
Length = 199
Score = 76 bits (185), Expect = 4e-014
Identities = 47/114 (41%), Positives = 67/114 (58%), Gaps = 9/114 (7%)
Frame = +1
Query: 67 DESGNKGMELNCRDAKIRKSSISRISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPV 246
DE NKG+E+ R KIR S I RISV GYD L R V+ L++ F+ CG I V++P
Sbjct: 2 DEIANKGLEVK-RSRKIRDSDIERISVTGYDIELPREHVESELKKLFSPCGEITDVHIP- 59
Query: 247 PLDVDVNGVILCRYSLIY-VNEEDEEKALKLDGSDMGGRIL--QINPYPFHENH 399
+ L ++ IY V E +KAL+L+GSDMGG + + +P+P E++
Sbjct: 60 ----ETRNSSLWSHAFIYFVGEGTADKALQLNGSDMGGWTVDAEADPFPKEEDN 109
>TAIR9_protein||AT5G03480.1 | Symbols: | nucleic acid binding / nucleotide
binding | chr5:869208-870855 REVERSE
Length = 322
Score = 74 bits (179), Expect = 2e-013
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 8/105 (7%)
Frame = +1
Query: 82 KGMELNCRDAKIRKSSISRISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPVPLDVD 261
K +ELN D ++S+ + I VEGYDTSL+ + AL +HFASCG I +YVP D
Sbjct: 10 KSLELNDSD---KQSTSTAICVEGYDTSLKEYPLRLALTKHFASCGEITQIYVP----RD 62
Query: 262 VNGVILCRYSLIYVNEED-EEKALKLDGSDMGGRILQINPYPFHE 393
IL S +++ E E+KAL+L G+D+GG + + P P HE
Sbjct: 63 FKKKILKSVSFMWIKGEGAEDKALQLSGTDVGGWTVIVKPKPKHE 107
Score = 72 bits (176), Expect = 4e-013
Identities = 54/150 (36%), Positives = 75/150 (50%), Gaps = 6/150 (4%)
Frame = +1
Query: 124 SSISRISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPVPLDVDVNGVILCRYSLIYV 303
S I+ ISVEGYDTSL++ ++ L +HF SCG I HVYVP + GV+ L
Sbjct: 110 SPITTISVEGYDTSLQKYLLELILEKHFDSCGEIRHVYVPTDYE---RGVLKSVAFLRIE 166
Query: 304 NEEDEEKALKLDGSDMGGRILQINPYPFHENHLDDYLAPMKEGEFFLPQHTIMVKDFESS 483
E E+KAL+L G+D+ G + + P ++ A E H V +++S
Sbjct: 167 GEGAEDKALQLSGTDVVGWTVIVKPSEIFYDNSSRAPATTPEASKI---HRFRVTGYDAS 223
Query: 484 LPIDVIMEQLDKYFSSKGSFVYQDVTASGA 573
LP I L K+FSS G V +S A
Sbjct: 224 LPEIDIQMALCKHFSSCGEIWQVTVLSSTA 253
>TAIR9_protein||AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1; nucleic acid
binding / nucleotide binding | chr1:18098186-18101422 FORWARD
Length = 558
Score = 63 bits (151), Expect = 3e-010
Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 7/75 (9%)
Frame = +1
Query: 136 RISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPVPLDV-DVNGVILCRYSLIYVNEE 312
+I V+G+D SL D+ LREHF+SCG I +V VP+ D + G+ +S E
Sbjct: 402 KIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFS------E 455
Query: 313 DEEKALKLDGSDMGG 357
+EKAL+L+GSDMGG
Sbjct: 456 GKEKALELNGSDMGG 470
>TAIR9_protein||AT5G05430.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: stem, leaf; EXPRESSED DURING:
LP.04 four leaves visible; BEST Arabidopsis thaliana protein match is:
RNA recognition motif (RRM)-containing protein (TAIR:AT3G09160.1); Has
23 Blast hits to 21 proteins in 1 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr5:1605275-1606703 REVERSE
Length = 159
Score = 49 bits (116), Expect = 4e-006
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Frame = +1
Query: 124 SSISRISVEGYDTSLRRADVDGALREHFASCGNIIHVYVPVPLDVDVNGVILCRYSLIYV 303
+ + RI V GYDT L D+ AL EHF+SCG I +Y +PL D IL R+ +
Sbjct: 20 NDVGRIKVTGYDTGLPLDDLYTALAEHFSSCGEIWEIY--IPLKFDETNTILNRFWWLLP 77
Query: 304 NEEDEEKALKLDGSDMGGRILQIN--PYPFHEN 396
+ ++ ++GG + + PYP H N
Sbjct: 78 PPFLSNSSAQV---NVGGWNVSVEAYPYPAHAN 107
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,337,905,103
Number of Sequences: 33410
Number of Extensions: 20337905103
Number of Successful Extensions: 647909322
Number of sequences better than 0.0: 0
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