BLASTX 7.6.2
Query= UN42033 /QuerySize=589
(588 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62312|LSM6_HUMAN U6 snRNA-associated Sm-like protein LSm6 OS... 131 3e-030
sp|P62313|LSM6_MOUSE U6 snRNA-associated Sm-like protein LSm6 OS... 131 3e-030
sp|A8NHT8|LSM6_COPC7 U6 snRNA-associated Sm-like protein LSm6 OS... 109 2e-023
sp|B0DWN3|LSM6_LACBS U6 snRNA-associated Sm-like protein LSm6 OS... 109 2e-023
sp|Q4PG71|LSM6_USTMA U6 snRNA-associated Sm-like protein LSm6 OS... 102 2e-021
sp|Q9UUI1|LSM6_SCHPO U6 snRNA-associated Sm-like protein LSm6 OS... 101 4e-021
sp|Q552U1|LSM6_DICDI Probable U6 snRNA-associated Sm-like protei... 99 1e-020
sp|A6R363|LSM6_AJECN U6 snRNA-associated Sm-like protein LSm6 OS... 96 1e-019
sp|Q2HAN0|LSM6_CHAGB U6 snRNA-associated Sm-like protein LSm6 OS... 95 2e-019
sp|Q4WNI0|LSM6_ASPFU U6 snRNA-associated Sm-like protein LSm6 OS... 92 2e-018
sp|A1DM27|LSM6_NEOFI U6 snRNA-associated Sm-like protein LSm6 OS... 92 3e-018
sp|A7UXE4|LSM6_NEUCR U6 snRNA-associated Sm-like protein LSm6 OS... 92 3e-018
sp|Q1DRN0|LSM6_COCIM U6 snRNA-associated Sm-like protein LSm6 OS... 90 1e-017
sp|A1CE19|LSM6_ASPCL U6 snRNA-associated Sm-like protein LSm6 OS... 89 2e-017
sp|Q5K712|LSM6_CRYNE U6 snRNA-associated Sm-like protein LSm6 OS... 89 2e-017
sp|A4RQ29|LSM6_MAGGR U6 snRNA-associated Sm-like protein LSm6 OS... 86 1e-016
sp|Q0UWI9|LSM6_PHANO U6 snRNA-associated Sm-like protein LSm6 OS... 83 1e-015
sp|A6S5C9|LSM6_BOTFB U6 snRNA-associated Sm-like protein LSm6 OS... 80 8e-015
sp|A7F5M4|LSM6_SCLS1 U6 snRNA-associated Sm-like protein LSm6 OS... 80 1e-014
sp|Q6BR90|LSM6_DEBHA U6 snRNA-associated Sm-like protein LSm6 OS... 79 2e-014
>sp|P62312|LSM6_HUMAN U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens
GN=LSM6 PE=1 SV=1
Length = 80
Score = 131 bits (329), Expect = 3e-030
Identities = 62/70 (88%), Positives = 67/70 (95%)
Frame = +2
Query: 146 KTPADFLKSIRGRPVVVKINSGVDYRGILACLDGYMNIAMEQTEEYVNVQLKNKYGDAFI 325
+TP+DFLK I GRPVVVK+NSGVDYRG+LACLDGYMNIA+EQTEEYVN QLKNKYGDAFI
Sbjct: 6 QTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFI 65
Query: 326 RGNNVLYIST 355
RGNNVLYIST
Sbjct: 66 RGNNVLYIST 75
>sp|P62313|LSM6_MOUSE U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus
GN=Lsm6 PE=2 SV=1
Length = 80
Score = 131 bits (329), Expect = 3e-030
Identities = 62/70 (88%), Positives = 67/70 (95%)
Frame = +2
Query: 146 KTPADFLKSIRGRPVVVKINSGVDYRGILACLDGYMNIAMEQTEEYVNVQLKNKYGDAFI 325
+TP+DFLK I GRPVVVK+NSGVDYRG+LACLDGYMNIA+EQTEEYVN QLKNKYGDAFI
Sbjct: 6 QTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFI 65
Query: 326 RGNNVLYIST 355
RGNNVLYIST
Sbjct: 66 RGNNVLYIST 75
>sp|A8NHT8|LSM6_COPC7 U6 snRNA-associated Sm-like protein LSm6 OS=Coprinopsis
cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=LSM6 PE=3 SV=2
Length = 95
Score = 109 bits (271), Expect = 2e-023
Identities = 52/70 (74%), Positives = 61/70 (87%)
Frame = +2
Query: 143 TKTPADFLKSIRGRPVVVKINSGVDYRGILACLDGYMNIAMEQTEEYVNVQLKNKYGDAF 322
T +P DFLK + G+ VVV++ SGVDYRGIL+CLDGYMNIAMEQTEE VN ++ N+YGDAF
Sbjct: 21 TGSPTDFLKGVVGKRVVVRLLSGVDYRGILSCLDGYMNIAMEQTEESVNGKVVNRYGDAF 80
Query: 323 IRGNNVLYIS 352
IRGNNVLYIS
Sbjct: 81 IRGNNVLYIS 90
>sp|B0DWN3|LSM6_LACBS U6 snRNA-associated Sm-like protein LSm6 OS=Laccaria
bicolor (strain S238N-H82) GN=LSM6 PE=3 SV=1
Length = 99
Score = 109 bits (270), Expect = 2e-023
Identities = 49/70 (70%), Positives = 61/70 (87%)
Frame = +2
Query: 143 TKTPADFLKSIRGRPVVVKINSGVDYRGILACLDGYMNIAMEQTEEYVNVQLKNKYGDAF 322
T +P DFLK + G+ V+V++ SGVDYRG+L+CLDGYMNIA+EQTEE+VN + N+YGDAF
Sbjct: 25 TGSPTDFLKGVVGKRVIVRLTSGVDYRGLLSCLDGYMNIALEQTEEHVNGVVTNRYGDAF 84
Query: 323 IRGNNVLYIS 352
IRGNNVLYIS
Sbjct: 85 IRGNNVLYIS 94
>sp|Q4PG71|LSM6_USTMA U6 snRNA-associated Sm-like protein LSm6 OS=Ustilago
maydis GN=LSM6 PE=3 SV=2
Length = 85
Score = 102 bits (254), Expect = 2e-021
Identities = 46/70 (65%), Positives = 59/70 (84%)
Frame = +2
Query: 149 TPADFLKSIRGRPVVVKINSGVDYRGILACLDGYMNIAMEQTEEYVNVQLKNKYGDAFIR 328
+P DFLK + G+ V V++NSG+DYRG+L+CLDGYMNIA+EQT EYV+ KN YGDAFIR
Sbjct: 14 SPNDFLKGVIGKNVNVRLNSGIDYRGVLSCLDGYMNIALEQTVEYVDGIKKNSYGDAFIR 73
Query: 329 GNNVLYISTV 358
GNNV+YI+ +
Sbjct: 74 GNNVMYITAL 83
>sp|Q9UUI1|LSM6_SCHPO U6 snRNA-associated Sm-like protein LSm6
OS=Schizosaccharomyces pombe GN=lsm6 PE=2 SV=1
Length = 75
Score = 101 bits (250), Expect = 4e-021
Identities = 43/71 (60%), Positives = 61/71 (85%)
Frame = +2
Query: 149 TPADFLKSIRGRPVVVKINSGVDYRGILACLDGYMNIAMEQTEEYVNVQLKNKYGDAFIR 328
+P +FL + G+ V+++++SGVDY+GIL+CLDGYMN+A+E+TEEYVN + N YGDAFIR
Sbjct: 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIR 63
Query: 329 GNNVLYISTVN 361
GNNVLY+S ++
Sbjct: 64 GNNVLYVSALD 74
>sp|Q552U1|LSM6_DICDI Probable U6 snRNA-associated Sm-like protein LSm6
OS=Dictyostelium discoideum GN=lsm6 PE=3 SV=1
Length = 88
Score = 99 bits (246), Expect = 1e-020
Identities = 47/65 (72%), Positives = 54/65 (83%)
Frame = +2
Query: 158 DFLKSIRGRPVVVKINSGVDYRGILACLDGYMNIAMEQTEEYVNVQLKNKYGDAFIRGNN 337
+F K GRPVVVK+N+GV+YRGIL +DG MNI MEQTEEY+N QLK KYGD F+RGNN
Sbjct: 19 NFFKMCIGRPVVVKLNNGVEYRGILEVVDGNMNIVMEQTEEYLNGQLKTKYGDCFLRGNN 78
Query: 338 VLYIS 352
VLYIS
Sbjct: 79 VLYIS 83
>sp|A6R363|LSM6_AJECN U6 snRNA-associated Sm-like protein LSm6 OS=Ajellomyces
capsulata (strain NAm1 / WU24) GN=LSM6 PE=3 SV=1
Length = 80
Score = 96 bits (238), Expect = 1e-019
Identities = 46/74 (62%), Positives = 56/74 (75%)
Frame = +2
Query: 131 SGGTTKTPADFLKSIRGRPVVVKINSGVDYRGILACLDGYMNIAMEQTEEYVNVQLKNKY 310
S K P+ FL I G PV VK+NSGV Y+G L +DGYMNIA+E+TEEYV+ +L+ Y
Sbjct: 5 SASEGKDPSAFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRRSY 64
Query: 311 GDAFIRGNNVLYIS 352
GDAF+RGNNVLYIS
Sbjct: 65 GDAFVRGNNVLYIS 78
>sp|Q2HAN0|LSM6_CHAGB U6 snRNA-associated Sm-like protein LSm6 OS=Chaetomium
globosum GN=LSM6 PE=3 SV=2
Length = 82
Score = 95 bits (235), Expect = 2e-019
Identities = 45/72 (62%), Positives = 54/72 (75%)
Frame = +2
Query: 137 GTTKTPADFLKSIRGRPVVVKINSGVDYRGILACLDGYMNIAMEQTEEYVNVQLKNKYGD 316
G K P+ FL I G PV VK+NSGV Y+G L +DGYMNIA+E+TEEYVN + YGD
Sbjct: 9 GEGKDPSGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVNGAKRRSYGD 68
Query: 317 AFIRGNNVLYIS 352
AF+RGNNV+YIS
Sbjct: 69 AFVRGNNVMYIS 80
>sp|Q4WNI0|LSM6_ASPFU U6 snRNA-associated Sm-like protein LSm6 OS=Aspergillus
fumigatus GN=lsm6 PE=3 SV=2
Length = 80
Score = 92 bits (227), Expect = 2e-018
Identities = 45/74 (60%), Positives = 56/74 (75%)
Frame = +2
Query: 131 SGGTTKTPADFLKSIRGRPVVVKINSGVDYRGILACLDGYMNIAMEQTEEYVNVQLKNKY 310
S + P+ FL I G PV VK+NSGV Y+G L +DGYMNIA+E++EE+V+ +LK Y
Sbjct: 5 SSSEGRDPSAFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALERSEEFVDGKLKRSY 64
Query: 311 GDAFIRGNNVLYIS 352
GDAFIRGNNVLYIS
Sbjct: 65 GDAFIRGNNVLYIS 78
>sp|A1DM27|LSM6_NEOFI U6 snRNA-associated Sm-like protein LSm6 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=lsm6
PE=3 SV=2
Length = 80
Score = 92 bits (226), Expect = 3e-018
Identities = 44/69 (63%), Positives = 55/69 (79%)
Frame = +2
Query: 146 KTPADFLKSIRGRPVVVKINSGVDYRGILACLDGYMNIAMEQTEEYVNVQLKNKYGDAFI 325
+ P+ FL I G PV VK+NSGV YRG L +DGYMNIA+E++EE+V+ +L+ YGDAFI
Sbjct: 10 RDPSAFLGEIIGAPVTVKLNSGVVYRGELQSVDGYMNIALERSEEFVDGKLRRSYGDAFI 69
Query: 326 RGNNVLYIS 352
RGNNVLYIS
Sbjct: 70 RGNNVLYIS 78
>sp|A7UXE4|LSM6_NEUCR U6 snRNA-associated Sm-like protein LSm6 OS=Neurospora
crassa GN=lsm-6 PE=3 SV=2
Length = 82
Score = 92 bits (226), Expect = 3e-018
Identities = 42/69 (60%), Positives = 53/69 (76%)
Frame = +2
Query: 146 KTPADFLKSIRGRPVVVKINSGVDYRGILACLDGYMNIAMEQTEEYVNVQLKNKYGDAFI 325
K P+ FL I G PV VK+NSGV Y+G L +DGYMNIA+E+TEE++N + YGDAF+
Sbjct: 12 KDPSGFLSEIIGNPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEFINGVKRRSYGDAFV 71
Query: 326 RGNNVLYIS 352
RGNNV+YIS
Sbjct: 72 RGNNVMYIS 80
>sp|Q1DRN0|LSM6_COCIM U6 snRNA-associated Sm-like protein LSm6 OS=Coccidioides
immitis GN=LSM6 PE=3 SV=1
Length = 80
Score = 90 bits (221), Expect = 1e-017
Identities = 41/70 (58%), Positives = 54/70 (77%)
Frame = +2
Query: 143 TKTPADFLKSIRGRPVVVKINSGVDYRGILACLDGYMNIAMEQTEEYVNVQLKNKYGDAF 322
++ P+ FL I G V VK+NSGV Y+G L +DGYMNIA+E+T+E+VN +L+ YGD F
Sbjct: 9 SQDPSAFLSGITGASVTVKLNSGVVYKGELQSIDGYMNIALEKTQEFVNGKLRKSYGDVF 68
Query: 323 IRGNNVLYIS 352
+RGNNVLYIS
Sbjct: 69 VRGNNVLYIS 78
>sp|A1CE19|LSM6_ASPCL U6 snRNA-associated Sm-like protein LSm6 OS=Aspergillus
clavatus GN=lsm6 PE=3 SV=2
Length = 78
Score = 89 bits (219), Expect = 2e-017
Identities = 41/69 (59%), Positives = 55/69 (79%)
Frame = +2
Query: 146 KTPADFLKSIRGRPVVVKINSGVDYRGILACLDGYMNIAMEQTEEYVNVQLKNKYGDAFI 325
+ P+ FL I G PV VK+NSGV Y+G L +DGYMNIA+EQ++E+++ +L+ YGDAFI
Sbjct: 9 RDPSAFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQSKEFMDGKLRRSYGDAFI 68
Query: 326 RGNNVLYIS 352
RGNNVLYI+
Sbjct: 69 RGNNVLYIA 77
>sp|Q5K712|LSM6_CRYNE U6 snRNA-associated Sm-like protein LSm6 OS=Cryptococcus
neoformans GN=LSM6 PE=3 SV=1
Length = 88
Score = 89 bits (219), Expect = 2e-017
Identities = 40/70 (57%), Positives = 53/70 (75%)
Frame = +2
Query: 149 TPADFLKSIRGRPVVVKINSGVDYRGILACLDGYMNIAMEQTEEYVNVQLKNKYGDAFIR 328
+P++FL++I G+ V V+I SGVDY G+L CLDGYMN+A+EQ EE+ YGD F+R
Sbjct: 16 SPSEFLRNIVGKRVKVRIGSGVDYTGLLTCLDGYMNVALEQAEEWAGEVKTAAYGDCFLR 75
Query: 329 GNNVLYISTV 358
GNNVLYIS +
Sbjct: 76 GNNVLYISAL 85
>sp|A4RQ29|LSM6_MAGGR U6 snRNA-associated Sm-like protein LSm6 OS=Magnaporthe
grisea GN=LSM6 PE=3 SV=1
Length = 83
Score = 86 bits (212), Expect = 1e-016
Identities = 42/72 (58%), Positives = 51/72 (70%)
Frame = +2
Query: 137 GTTKTPADFLKSIRGRPVVVKINSGVDYRGILACLDGYMNIAMEQTEEYVNVQLKNKYGD 316
G K P FL I G V VK+NSGV Y+G L +DGYMNIA+E+ EE+V Q K YGD
Sbjct: 9 GEGKDPTSFLGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSYGD 68
Query: 317 AFIRGNNVLYIS 352
AF+RGNNV+YI+
Sbjct: 69 AFVRGNNVMYIA 80
>sp|Q0UWI9|LSM6_PHANO U6 snRNA-associated Sm-like protein LSm6 OS=Phaeosphaeria
nodorum GN=LSM6 PE=3 SV=2
Length = 89
Score = 83 bits (203), Expect = 1e-015
Identities = 41/88 (46%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Frame = +2
Query: 104 MSGSGDNKV--SGGTTKTPADFLKSIRGRPVVVKINSGVDYRGILACLDGYMNIAMEQTE 277
MS +G++ G ++ P+ FL I G PV VK+NSG+ Y+G L +DGYMNIA+E+ +
Sbjct: 1 MSTNGESPAPEGAGDSRDPSGFLSEIIGAPVTVKLNSGIVYKGDLQSVDGYMNIALERCK 60
Query: 278 EYVNVQLKNKYGDAFIRGNNVLYISTVN 361
E ++ +GDAF+RGNNV YIS N
Sbjct: 61 EVAEGRVIRNWGDAFVRGNNVTYISADN 88
>sp|A6S5C9|LSM6_BOTFB U6 snRNA-associated Sm-like protein LSm6 OS=Botryotinia
fuckeliana (strain B05.10) GN=lsm6 PE=3 SV=2
Length = 85
Score = 80 bits (196), Expect = 8e-015
Identities = 37/72 (51%), Positives = 53/72 (73%)
Frame = +2
Query: 137 GTTKTPADFLKSIRGRPVVVKINSGVDYRGILACLDGYMNIAMEQTEEYVNVQLKNKYGD 316
G K P+ FL I G V+VK+N+ + ++G L +DGYMNIA+E+ EE+V+ + K +GD
Sbjct: 9 GEGKDPSSFLSEIIGSKVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVHGD 68
Query: 317 AFIRGNNVLYIS 352
AF+RGNNV+YIS
Sbjct: 69 AFVRGNNVMYIS 80
>sp|A7F5M4|LSM6_SCLS1 U6 snRNA-associated Sm-like protein LSm6 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=lsm6 PE=3 SV=2
Length = 85
Score = 80 bits (195), Expect = 1e-014
Identities = 37/72 (51%), Positives = 53/72 (73%)
Frame = +2
Query: 137 GTTKTPADFLKSIRGRPVVVKINSGVDYRGILACLDGYMNIAMEQTEEYVNVQLKNKYGD 316
G K P+ FL I G V+VK+N+ + ++G L +DGYMNIA+E+ EE+V+ + K +GD
Sbjct: 9 GEGKDPSSFLSDIIGSRVIVKLNNSLVFKGELQSVDGYMNIALEKCEEWVHGKKKTVHGD 68
Query: 317 AFIRGNNVLYIS 352
AF+RGNNV+YIS
Sbjct: 69 AFVRGNNVMYIS 80
>sp|Q6BR90|LSM6_DEBHA U6 snRNA-associated Sm-like protein LSm6 OS=Debaryomyces
hansenii GN=LSM6 PE=3 SV=2
Length = 85
Score = 79 bits (193), Expect = 2e-014
Identities = 39/83 (46%), Positives = 51/83 (61%)
Frame = +2
Query: 104 MSGSGDNKVSGGTTKTPADFLKSIRGRPVVVKINSGVDYRGILACLDGYMNIAMEQTEEY 283
MS SG P+ FL I G V V++++GV+Y G L +DGYMNI +++T+E+
Sbjct: 1 MSSIKKESSSGSENTGPSVFLSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEF 60
Query: 284 VNVQLKNKYGDAFIRGNNVLYIS 352
V YGD FIRGNNVLYIS
Sbjct: 61 VGGDQARNYGDVFIRGNNVLYIS 83
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,830,358,129
Number of Sequences: 518415
Number of Extensions: 160830358129
Number of Successful Extensions: 990542261
Number of sequences better than 0.0: 0
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