BLASTX 7.6.2

Query= UN42033 /QuerySize=589
        (588 letters)

Database: TAIR9 protein;
          33,410 sequences; 13,468,323 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

TAIR9_protein||AT3G59810.1 | Symbols:  | small nuclear ribonucle...    156   1e-038
TAIR9_protein||AT2G43810.1 | Symbols:  | small nuclear ribonucle...    151   4e-037
TAIR9_protein||AT2G43810.2 | Symbols:  | small nuclear ribonucle...    151   4e-037
TAIR9_protein||AT4G30220.1 | Symbols: RUXF | RUXF (SMALL NUCLEAR...     70   8e-013
TAIR9_protein||AT2G14285.1 | Symbols:  | FUNCTIONS IN: molecular...     53   1e-007

>TAIR9_protein||AT3G59810.1 | Symbols:  | small nuclear ribonucleoprotein F,
        putative / U6 snRNA-associated Sm-like protein, putative / Sm protein
        F, putative | chr3:22096841-22097666 FORWARD

          Length = 92

 Score =  156 bits (393), Expect = 1e-038
 Identities = 77/91 (84%), Positives = 80/91 (87%)
 Frame = +2

Query: 113 SGDNKVSGGTTKTPADFLKSIRGRPVVVKINSGVDYRGILACLDGYMNIAMEQTEEYVNV 292
           SG  +   GTTKTPADFLKSIRGRPVVVK+NSGVDYRG L CLDGYMNIAMEQTEEYVN 
Sbjct:   2 SGVEEKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNG 61

Query: 293 QLKNKYGDAFIRGNNVLYISTVNTPLADGA* 385
           QLKNKYGDAFIRGNNVLYISTVN  +ADGA*
Sbjct:  62 QLKNKYGDAFIRGNNVLYISTVNMTVADGA* 92

>TAIR9_protein||AT2G43810.1 | Symbols:  | small nuclear ribonucleoprotein F,
        putative / U6 snRNA-associated Sm-like protein, putative / Sm protein
        F, putative | chr2:18149725-18150879 FORWARD

          Length = 92

 Score =  151 bits (380), Expect = 4e-037
 Identities = 73/91 (80%), Positives = 79/91 (86%)
 Frame = +2

Query: 113 SGDNKVSGGTTKTPADFLKSIRGRPVVVKINSGVDYRGILACLDGYMNIAMEQTEEYVNV 292
           SG  + + GTTKTPADFLKSIRG+PVVVK+NSGVDYRGIL CLDGYMNIAMEQTEEYVN 
Sbjct:   2 SGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNG 61

Query: 293 QLKNKYGDAFIRGNNVLYISTVNTPLADGA* 385
           QLKN YGDAF+RGNNVLYIST    L+DGA*
Sbjct:  62 QLKNTYGDAFVRGNNVLYISTTKGTLSDGA* 92

>TAIR9_protein||AT2G43810.2 | Symbols:  | small nuclear ribonucleoprotein F,
        putative / U6 snRNA-associated Sm-like protein, putative / Sm protein
        F, putative | chr2:18149725-18150879 FORWARD

          Length = 92

 Score =  151 bits (380), Expect = 4e-037
 Identities = 73/91 (80%), Positives = 79/91 (86%)
 Frame = +2

Query: 113 SGDNKVSGGTTKTPADFLKSIRGRPVVVKINSGVDYRGILACLDGYMNIAMEQTEEYVNV 292
           SG  + + GTTKTPADFLKSIRG+PVVVK+NSGVDYRGIL CLDGYMNIAMEQTEEYVN 
Sbjct:   2 SGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNG 61

Query: 293 QLKNKYGDAFIRGNNVLYISTVNTPLADGA* 385
           QLKN YGDAF+RGNNVLYIST    L+DGA*
Sbjct:  62 QLKNTYGDAFVRGNNVLYISTTKGTLSDGA* 92

>TAIR9_protein||AT4G30220.1 | Symbols: RUXF | RUXF (SMALL NUCLEAR
        RIBONUCLEOPROTEIN F) | chr4:14803100-14804259 REVERSE

          Length = 89

 Score =  70 bits (170), Expect = 8e-013
 Identities = 31/69 (44%), Positives = 46/69 (66%)
 Frame = +2

Query: 152 PADFLKSIRGRPVVVKINSGVDYRGILACLDGYMNIAMEQTEEYVNVQLKNKYGDAFIRG 331
           P  FL ++ G+ V+VK+  G++Y+G LA +D YMN+ +  TEEY++ QL    G+  IR 
Sbjct:   8 PKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRC 67

Query: 332 NNVLYISTV 358
           NNVLY+  V
Sbjct:  68 NNVLYVRGV 76

>TAIR9_protein||AT2G14285.1 | Symbols:  | FUNCTIONS IN: molecular_function
        unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
        cellular_component unknown; CONTAINS InterPro DOMAIN/s: Small nuclear
        ribonucleoprotein SmF (InterPro:IPR016487), Like-Sm ribonucleoprotein,
        core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and
        archaea-type, core (InterPro:IPR006649), Like-Sm
        ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis
        thaliana protein match is: RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
        (TAIR:AT4G30220.1); Has 585 Blast hits to 585 proteins in 157 species:
        Archae - 67; Bacteria - 0; Metazoa - 219; Fungi - 139; Plants - 63;
        Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). |
        chr2:6052612-6053500 REVERSE

          Length = 62

 Score =  53 bits (125), Expect = 1e-007
 Identities = 23/49 (46%), Positives = 33/49 (67%)
 Frame = +2

Query: 212 VDYRGILACLDGYMNIAMEQTEEYVNVQLKNKYGDAFIRGNNVLYISTV 358
           ++Y+G LA +D YMN+ +  TEEY++ QL    G+  IR NNVLY+  V
Sbjct:   1 MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGV 49

  Database: TAIR9 protein
    Posted date:  Wed Jul 08 15:16:08 2009
  Number of letters in database: 13,468,323
  Number of sequences in database:  33,410

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,706,817,270
Number of Sequences: 33410
Number of Extensions: 20706817270
Number of Successful Extensions: 658841694
Number of sequences better than 0.0: 0