BLASTX 7.6.2
Query= UN42089 /QuerySize=719
(718 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protei... 106 2e-022
sp|Q9LGE6|LSM4_ORYSJ Probable U6 snRNA-associated Sm-like protei... 106 3e-022
sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protei... 104 1e-021
sp|Q3ZBK6|LSM4_BOVIN U6 snRNA-associated Sm-like protein LSm4 OS... 100 1e-020
sp|Q9Y4Z0|LSM4_HUMAN U6 snRNA-associated Sm-like protein LSm4 OS... 100 1e-020
sp|Q9QXA5|LSM4_MOUSE U6 snRNA-associated Sm-like protein LSm4 OS... 100 1e-020
sp|Q19952|LSM4_CAEEL Probable U6 snRNA-associated Sm-like protei... 79 3e-014
sp|O14352|LSM4_SCHPO Probable U6 snRNA-associated Sm-like protei... 75 3e-013
sp|Q54KX4|LSM4_DICDI Probable U6 snRNA-associated Sm-like protei... 75 5e-013
sp|O23654|VATA_ARATH V-type proton ATPase catalytic subunit A OS... 60 1e-008
sp|Q39291|VATA_BRANA V-type proton ATPase catalytic subunit A OS... 60 1e-008
sp|P31405|VATA_GOSHI V-type proton ATPase catalytic subunit A OS... 59 2e-008
sp|P13548|VATA_PHAAU V-type proton ATPase catalytic subunit A OS... 59 2e-008
sp|P09469|VATA_DAUCA V-type proton ATPase catalytic subunit A OS... 58 6e-008
sp|Q39442|VATA_BETVU V-type proton ATPase catalytic subunit A OS... 57 1e-007
sp|Q9SM09|VATA_CITUN V-type proton ATPase catalytic subunit A OS... 57 1e-007
>sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4
OS=Nicotiana tabacum PE=2 SV=1
Length = 146
Score = 106 bits (264), Expect = 2e-022
Identities = 44/51 (86%), Positives = 49/51 (96%)
Frame = +3
Query: 498 QDHPMLVDLKNGETYSGHLVNCDTWMNIYIREVICTSKDGDRFWRMPECCI 650
Q HPMLV+LKNGETY+GHLVNCDTWMNI++REVICTSKDGDRFWRMPEC +
Sbjct: 11 QGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYV 61
>sp|Q9LGE6|LSM4_ORYSJ Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza
sativa subsp. japonica GN=Os01g0256900 PE=2 SV=1
Length = 147
Score = 106 bits (262), Expect = 3e-022
Identities = 44/51 (86%), Positives = 49/51 (96%)
Frame = +3
Query: 498 QDHPMLVDLKNGETYSGHLVNCDTWMNIYIREVICTSKDGDRFWRMPECCI 650
Q HPMLV+LKNGETY+GHLVNCDTWMNI++REVICTSKDGD+FWRMPEC I
Sbjct: 11 QGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYI 61
>sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus
sylvatica GN=LSM4 PE=2 SV=1
Length = 148
Score = 104 bits (257), Expect = 1e-021
Identities = 43/51 (84%), Positives = 49/51 (96%)
Frame = +3
Query: 498 QDHPMLVDLKNGETYSGHLVNCDTWMNIYIREVICTSKDGDRFWRMPECCI 650
Q HPMLV+LK+GETY+GHLVNCDTWMNI++REVICTSKDGDRFWRMP+C I
Sbjct: 11 QGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCYI 61
>sp|Q3ZBK6|LSM4_BOVIN U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus
GN=LSM4 PE=2 SV=1
Length = 139
Score = 100 bits (247), Expect = 1e-020
Identities = 41/51 (80%), Positives = 48/51 (94%)
Frame = +3
Query: 498 QDHPMLVDLKNGETYSGHLVNCDTWMNIYIREVICTSKDGDRFWRMPECCI 650
Q+HPMLV+LKNGETY+GHLV+CD WMNI +REVICTS+DGD+FWRMPEC I
Sbjct: 11 QNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
>sp|Q9Y4Z0|LSM4_HUMAN U6 snRNA-associated Sm-like protein LSm4 OS=Homo sapiens
GN=LSM4 PE=1 SV=1
Length = 139
Score = 100 bits (247), Expect = 1e-020
Identities = 41/51 (80%), Positives = 48/51 (94%)
Frame = +3
Query: 498 QDHPMLVDLKNGETYSGHLVNCDTWMNIYIREVICTSKDGDRFWRMPECCI 650
Q+HPMLV+LKNGETY+GHLV+CD WMNI +REVICTS+DGD+FWRMPEC I
Sbjct: 11 QNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
>sp|Q9QXA5|LSM4_MOUSE U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus
GN=Lsm4 PE=2 SV=1
Length = 137
Score = 100 bits (247), Expect = 1e-020
Identities = 41/51 (80%), Positives = 48/51 (94%)
Frame = +3
Query: 498 QDHPMLVDLKNGETYSGHLVNCDTWMNIYIREVICTSKDGDRFWRMPECCI 650
Q+HPMLV+LKNGETY+GHLV+CD WMNI +REVICTS+DGD+FWRMPEC I
Sbjct: 11 QNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYI 61
>sp|Q19952|LSM4_CAEEL Probable U6 snRNA-associated Sm-like protein LSm4
OS=Caenorhabditis elegans GN=lsm-4 PE=3 SV=1
Length = 123
Score = 79 bits (193), Expect = 3e-014
Identities = 33/51 (64%), Positives = 44/51 (86%)
Frame = +3
Query: 498 QDHPMLVDLKNGETYSGHLVNCDTWMNIYIREVICTSKDGDRFWRMPECCI 650
Q+HPMLV+LKNGETY+GHL CD+WMNI++ +VI TSKDGD+F++M E +
Sbjct: 12 QNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYV 62
>sp|O14352|LSM4_SCHPO Probable U6 snRNA-associated Sm-like protein LSm4
OS=Schizosaccharomyces pombe GN=lsm4 PE=2 SV=1
Length = 121
Score = 75 bits (184), Expect = 3e-013
Identities = 32/51 (62%), Positives = 42/51 (82%)
Frame = +3
Query: 498 QDHPMLVDLKNGETYSGHLVNCDTWMNIYIREVICTSKDGDRFWRMPECCI 650
Q P+LV+LKNGET++GHL NCD +MN+ +REVI T DGD+F+R+PEC I
Sbjct: 11 QGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYI 61
>sp|Q54KX4|LSM4_DICDI Probable U6 snRNA-associated Sm-like protein LSm4
OS=Dictyostelium discoideum GN=lsm4 PE=3 SV=1
Length = 177
Score = 75 bits (182), Expect = 5e-013
Identities = 31/51 (60%), Positives = 40/51 (78%)
Frame = +3
Query: 498 QDHPMLVDLKNGETYSGHLVNCDTWMNIYIREVICTSKDGDRFWRMPECCI 650
Q H ++V+LKNGETY+G LVNCD WMNI ++ VI TSKD D+FW++ C I
Sbjct: 11 QGHQIMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCYI 61
>sp|O23654|VATA_ARATH V-type proton ATPase catalytic subunit A OS=Arabidopsis
thaliana GN=VHA-A PE=2 SV=1
Length = 623
Score = 60 bits (145), Expect = 1e-008
Identities = 29/31 (93%)
Frame = +1
Query: 322 DLKESEYGYARKVSGPVVVADGMAGAAMYEL 414
D KESEYGY RKVSGPVVVADGMAGAAMYEL
Sbjct: 15 DEKESEYGYVRKVSGPVVVADGMAGAAMYEL 45
>sp|Q39291|VATA_BRANA V-type proton ATPase catalytic subunit A OS=Brassica napus
PE=2 SV=1
Length = 623
Score = 60 bits (145), Expect = 1e-008
Identities = 29/31 (93%)
Frame = +1
Query: 322 DLKESEYGYARKVSGPVVVADGMAGAAMYEL 414
D KESEYGY RKVSGPVVVADGMAGAAMYEL
Sbjct: 15 DEKESEYGYVRKVSGPVVVADGMAGAAMYEL 45
>sp|P31405|VATA_GOSHI V-type proton ATPase catalytic subunit A OS=Gossypium
hirsutum GN=CVA69.24 PE=2 SV=1
Length = 623
Score = 59 bits (142), Expect = 2e-008
Identities = 28/29 (96%)
Frame = +1
Query: 328 KESEYGYARKVSGPVVVADGMAGAAMYEL 414
KESEYGY RKVSGPVVVADGMAGAAMYEL
Sbjct: 17 KESEYGYVRKVSGPVVVADGMAGAAMYEL 45
>sp|P13548|VATA_PHAAU V-type proton ATPase catalytic subunit A OS=Phaseolus
aureus PE=1 SV=3
Length = 623
Score = 59 bits (142), Expect = 2e-008
Identities = 28/29 (96%)
Frame = +1
Query: 328 KESEYGYARKVSGPVVVADGMAGAAMYEL 414
KESEYGY RKVSGPVVVADGMAGAAMYEL
Sbjct: 17 KESEYGYVRKVSGPVVVADGMAGAAMYEL 45
>sp|P09469|VATA_DAUCA V-type proton ATPase catalytic subunit A OS=Daucus carota
PE=2 SV=1
Length = 623
Score = 58 bits (138), Expect = 6e-008
Identities = 27/29 (93%)
Frame = +1
Query: 328 KESEYGYARKVSGPVVVADGMAGAAMYEL 414
KESEYGY RKVSGPVVVADGM GAAMYEL
Sbjct: 17 KESEYGYVRKVSGPVVVADGMGGAAMYEL 45
>sp|Q39442|VATA_BETVU V-type proton ATPase catalytic subunit A OS=Beta vulgaris
PE=2 SV=1
Length = 623
Score = 57 bits (135), Expect = 1e-007
Identities = 27/29 (93%)
Frame = +1
Query: 328 KESEYGYARKVSGPVVVADGMAGAAMYEL 414
KESEYGY RKVSGPVVVADGM GAAMYEL
Sbjct: 17 KESEYGYIRKVSGPVVVADGMNGAAMYEL 45
>sp|Q9SM09|VATA_CITUN V-type proton ATPase catalytic subunit A OS=Citrus unshiu
PE=2 SV=1
Length = 623
Score = 57 bits (135), Expect = 1e-007
Identities = 26/29 (89%), Positives = 27/29 (93%)
Frame = +1
Query: 328 KESEYGYARKVSGPVVVADGMAGAAMYEL 414
KESEYGY RKVSGPVV+ADGM GAAMYEL
Sbjct: 17 KESEYGYVRKVSGPVVIADGMNGAAMYEL 45
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,830,358,129
Number of Sequences: 518415
Number of Extensions: 160830358129
Number of Successful Extensions: 990542261
Number of sequences better than 0.0: 0
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